Clone Information

BLAST Search Result

Clone Name	bastl04h07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_469646.1\| Oryza sativa (japonica cultivar-group), mRNA	333	3e-88
2	dbj\|AK103066.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	333	3e-88
3	gb\|AF124045.1\| Sorghum bicolor BAC clone 110K5, partial sequence	202	7e-49
4	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	202	7e-49
5	gb\|AY387483.1\| Oryza sativa (japonica cultivar-group) BAC OSJNBa...	202	7e-49
6	gb\|AC117988.3\| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom...	202	7e-49
7	gb\|AC118133.4\| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genom...	202	7e-49
8	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	202	7e-49
9	gb\|AY371488.1\| Zea mays clone BAC 276N12-123C01, partial sequence	194	2e-46
10	ref\|NM_116434.3\| Arabidopsis thaliana unknown protein AT4G02030 ...	78	3e-11
11	gb\|BT014498.1\| Lycopersicon esculentum clone 133869R, mRNA sequence	68	3e-08
12	emb\|AL161493.2\|ATCHRIV5 Arabidopsis thaliana DNA chromosome 4, c...	64	4e-07
13	gb\|AF001308.1\|ATAF001308 Arabidopsis thaliana BAC T10M13 from ch...	64	4e-07
14	dbj\|AP006137.1\| Lotus japonicus genomic DNA, chromosome 5, clone...	50	0.007
15	ref\|NM_197555.1\| Oryza sativa (japonica cultivar-group) putative...	44	0.40
16	gb\|AC074196.14\| Oryza sativa chromosome 10 BAC OSJNBa0040D23 gen...	44	0.40
17	ref\|XM_625221.1\| PREDICTED: Apis mellifera similar to CG15087-PA...	44	0.40
18	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.40
19	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	44	0.40
20	gb\|AY040333.1\| Dictyostelium mucoroides 18S ribosomal RNA gene, ...	42	1.6
21	gb\|AC092417.2\| Homo sapiens chromosome 3 clone RP11-90M23, compl...	42	1.6
22	gb\|AE006470.1\| Chlorobium tepidum TLS, complete genome	42	1.6
23	dbj\|BA000012.4\| Mesorhizobium loti MAFF303099 DNA, complete genome	42	1.6
24	dbj\|AP006193.1\| Homo sapiens genomic DNA, chromosome 3, clone:RP...	42	1.6
25	dbj\|AP000500.1\| Homo sapiens genomic DNA, chromosome 3p21.3, clo...	42	1.6
26	dbj\|AB026899.1\| Homo sapiens DNA, DLEC1 to ORCTL4 gene region, s...	42	1.6
27	gb\|AC101277.16\| Mus musculus chromosome 1, clone RP23-101P2, com...	40	6.3
28	ref\|XM_550542.1\| Oryza sativa (japonica cultivar-group), mRNA	40	6.3
29	gb\|AC134898.4\| Mus musculus BAC clone RP23-478H2 from chromosome...	40	6.3
30	gb\|AC092350.4\| Homo sapiens chromosome 16 clone RP11-29G3, compl...	40	6.3
31	emb\|BX572599.1\| Rhodopseudomonas palustris CGA009 complete genom...	40	6.3
32	gb\|AF499451.1\| Vitis vinifera polygalacturonase-inhibiting prote...	40	6.3
33	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
34	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
35	gb\|AF305093.1\|AF305093 Vitis vinifera polygalacturonase inhibiti...	40	6.3
36	dbj\|AP003457.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
37	dbj\|AP003564.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
38	dbj\|AP005067.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
39	dbj\|AP005065.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
40	dbj\|AK099129.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.3
41	emb\|CT573326.1\| Pseudomonas entomophila str. L48 chromosome,comp...	40	6.3
42	dbj\|AK065857.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.3
43	gb\|AC167667.4\| Culex pipiens quinquefasciatus, clone Culex pipie...	40	6.3
44	gb\|CP000086.1\| Burkholderia thailandensis E264 chromosome I, com...	40	6.3
45	gb\|AC140367.3\| Mus musculus BAC clone RP24-226L19 from 1, comple...	40	6.3

>ref|XM_469646.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2535

 Score =  333 bits (168), Expect = 3e-88
 Identities = 243/268 (90%)
 Strand = Plus / Plus

                                                                       
Query: 200 ccgcgtcgccgctcgagtccatcaactccacctccttcaaccccgatgtctacatggacg 259
           ||||||||||||||||  ||||||||||  |||||||| | ||||| ||||||||| |||
Sbjct: 167 ccgcgtcgccgctcgacaccatcaactcggcctccttcgatcccgacgtctacatgaacg 226

                                                                       
Query: 260 tcctggtgcaacaatcaaatctggaagcccttctacagaggcatgtgaagatggctgctg 319
           |||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||
Sbjct: 227 tcctggtgcaacaatcaaatctggaagctcttttacagaggcatgtgaagatggccgctg 286

                                                                       
Query: 320 aaatcaagaacctggacacagacttacagatgctagtatatgagaattataacaaattta 379
           | |||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 287 agatcaagaatctggatacagacttacaaatgctagtatatgagaattataacaagttta 346

                                                                       
Query: 380 taagtgcaactgacactataaaaaggatgaagactaacattgctggcatggagacaaaca 439
           | || ||||||||||||||||||||||||||||||||||||| |||||||||  ||||||
Sbjct: 347 tcagcgcaactgacactataaaaaggatgaagactaacattgttggcatggaagcaaaca 406

                                       
Query: 440 tggaacaactactatcaaagataacatc 467
           |||| || || || ||||||||||||||
Sbjct: 407 tggagcagctcctttcaaagataacatc 434



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Plus

                                                                       
Query: 69  cgccgcgccgacggcaatggacgagaaggcccggcgcacgcgcgatctcctggccagttt 128
           ||||||||||  ||||||||||||||||||||||||||||||||| ||||| || || ||
Sbjct: 30  cgccgcgccgcaggcaatggacgagaaggcccggcgcacgcgcgacctcctcgcgagctt 89

                  
Query: 129 ctacaac 135
           |||||||
Sbjct: 90  ctacaac 96

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>dbj|AK103066.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117P10, full
           insert sequence
          Length = 2552

 Score =  333 bits (168), Expect = 3e-88
 Identities = 243/268 (90%)
 Strand = Plus / Plus

                                                                       
Query: 200 ccgcgtcgccgctcgagtccatcaactccacctccttcaaccccgatgtctacatggacg 259
           ||||||||||||||||  ||||||||||  |||||||| | ||||| ||||||||| |||
Sbjct: 135 ccgcgtcgccgctcgacaccatcaactcggcctccttcgatcccgacgtctacatgaacg 194

                                                                       
Query: 260 tcctggtgcaacaatcaaatctggaagcccttctacagaggcatgtgaagatggctgctg 319
           |||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||
Sbjct: 195 tcctggtgcaacaatcaaatctggaagctcttttacagaggcatgtgaagatggccgctg 254

                                                                       
Query: 320 aaatcaagaacctggacacagacttacagatgctagtatatgagaattataacaaattta 379
           | |||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 255 agatcaagaatctggatacagacttacaaatgctagtatatgagaattataacaagttta 314

                                                                       
Query: 380 taagtgcaactgacactataaaaaggatgaagactaacattgctggcatggagacaaaca 439
           | || ||||||||||||||||||||||||||||||||||||| |||||||||  ||||||
Sbjct: 315 tcagcgcaactgacactataaaaaggatgaagactaacattgttggcatggaagcaaaca 374

                                       
Query: 440 tggaacaactactatcaaagataacatc 467
           |||| || || || ||||||||||||||
Sbjct: 375 tggagcagctcctttcaaagataacatc 402



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 15 ccccggcgtccaacctcctcc 35
          |||||||||||||||||||||
Sbjct: 25 ccccggcgtccaacctcctcc 45

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>gb|AF124045.1| Sorghum bicolor BAC clone 110K5, partial sequence
          Length = 78195

 Score =  202 bits (102), Expect = 7e-49
 Identities = 132/142 (92%)
 Strand = Plus / Minus

                                                                         
Query: 264   ggtgcaacaatcaaatctggaagcccttctacagaggcatgtgaagatggctgctgaaat 323
             |||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||| ||
Sbjct: 26430 ggtgcagcaatccaatctggaaggccttctacaaaggcatgtgaagatggctgctgagat 26371

                                                                         
Query: 324   caagaacctggacacagacttacagatgctagtatatgagaattataacaaatttataag 383
             ||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||| ||
Sbjct: 26370 caagaacctagacacagatttacagatgctagtgtatgagaattataacaagtttattag 26311

                                   
Query: 384   tgcaactgacactataaaaagg 405
             ||||||||||||||||||||||
Sbjct: 26310 tgcaactgacactataaaaagg 26289



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                         
Query: 67    ggcgccgcgccgacggcaatggacgagaaggcccggcgcacgcgcgatctcctggccagt 126
             |||||||| ||| ||||||||||||||||||| ||||||||||| || ||||| || || 
Sbjct: 28011 ggcgccgcaccgccggcaatggacgagaaggcgcggcgcacgcgtgacctccttgctagc 27952

                      
Query: 127   ttctacaac 135
             |||||||||
Sbjct: 27951 ttctacaac 27943



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 403   aggatgaagactaacattgctggcatggagacaaacatgga 443
             ||||||||||||||||||| ||| ||||||||||| |||||
Sbjct: 26168 aggatgaagactaacattgttgggatggagacaaatatgga 26128



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                     
Query: 200   ccgcgtcgccgctcgagtccatcaactccacctccttcaaccccgatgtctacatg 255
             |||| ||||| ||||| |||||||||||| |||||||| | |||||  ||||||||
Sbjct: 27870 ccgcatcgcccctcgactccatcaactccgcctccttcgatcccgacatctacatg 27815

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  202 bits (102), Expect = 7e-49
 Identities = 132/142 (92%)
 Strand = Plus / Plus

                                                                            
Query: 264      ggtgcaacaatcaaatctggaagcccttctacagaggcatgtgaagatggctgctgaaat 323
                |||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| ||
Sbjct: 29957613 ggtgcaacaatcaaatctggaagctcttttacagaggcatgtgaagatggccgctgagat 29957672

                                                                            
Query: 324      caagaacctggacacagacttacagatgctagtatatgagaattataacaaatttataag 383
                |||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 29957673 caagaatctggatacagacttacaaatgctagtatatgagaattataacaagtttatcag 29957732

                                      
Query: 384      tgcaactgacactataaaaagg 405
                 |||||||||||||||||||||
Sbjct: 29957733 cgcaactgacactataaaaagg 29957754



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Plus

                                                                            
Query: 69       cgccgcgccgacggcaatggacgagaaggcccggcgcacgcgcgatctcctggccagttt 128
                ||||||||||  ||||||||||||||||||||||||||||||||| ||||| || || ||
Sbjct: 29956665 cgccgcgccgcaggcaatggacgagaaggcccggcgcacgcgcgacctcctcgcgagctt 29956724

                       
Query: 129      ctacaac 135
                |||||||
Sbjct: 29956725 ctacaac 29956731



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                            
Query: 200      ccgcgtcgccgctcgagtccatcaactccacctccttcaaccccgatgtctacatggacg 259
                ||||||||||||||||  ||||||||||  |||||||| | ||||| ||||||||| |||
Sbjct: 29956802 ccgcgtcgccgctcgacaccatcaactcggcctccttcgatcccgacgtctacatgaacg 29956861

                       
Query: 260      tcctggt 266
                |||||||
Sbjct: 29956862 tcctggt 29956868



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 403      aggatgaagactaacattgctggcatggagacaaacatgga 443
                ||||||||||||||||||| |||||||||  ||||||||||
Sbjct: 29957858 aggatgaagactaacattgttggcatggaagcaaacatgga 29957898



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 15       ccccggcgtccaacctcctcc 35
                |||||||||||||||||||||
Sbjct: 29956576 ccccggcgtccaacctcctcc 29956596

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>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete
             sequence
          Length = 159661

 Score =  202 bits (102), Expect = 7e-49
 Identities = 132/142 (92%)
 Strand = Plus / Minus

                                                                         
Query: 264   ggtgcaacaatcaaatctggaagcccttctacagaggcatgtgaagatggctgctgaaat 323
             |||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| ||
Sbjct: 52993 ggtgcaacaatcaaatctggaagctcttttacagaggcatgtgaagatggccgctgagat 52934

                                                                         
Query: 324   caagaacctggacacagacttacagatgctagtatatgagaattataacaaatttataag 383
             |||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 52933 caagaatctggatacagacttacaaatgctagtatatgagaattataacaagtttatcag 52874

                                   
Query: 384   tgcaactgacactataaaaagg 405
              |||||||||||||||||||||
Sbjct: 52873 cgcaactgacactataaaaagg 52852



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                         
Query: 69    cgccgcgccgacggcaatggacgagaaggcccggcgcacgcgcgatctcctggccagttt 128
             ||||||||||  ||||||||||||||||||||||||||||||||| ||||| || || ||
Sbjct: 53941 cgccgcgccgcaggcaatggacgagaaggcccggcgcacgcgcgacctcctcgcgagctt 53882

                    
Query: 129   ctacaac 135
             |||||||
Sbjct: 53881 ctacaac 53875



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 59/67 (88%)
 Strand = Plus / Minus

                                                                         
Query: 200   ccgcgtcgccgctcgagtccatcaactccacctccttcaaccccgatgtctacatggacg 259
             ||||||||||||||||  ||||||||||  |||||||| | ||||| ||||||||| |||
Sbjct: 53804 ccgcgtcgccgctcgacaccatcaactcggcctccttcgatcccgacgtctacatgaacg 53745

                    
Query: 260   tcctggt 266
             |||||||
Sbjct: 53744 tcctggt 53738



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 403   aggatgaagactaacattgctggcatggagacaaacatgga 443
             ||||||||||||||||||| |||||||||  ||||||||||
Sbjct: 52748 aggatgaagactaacattgttggcatggaagcaaacatgga 52708



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    ccccggcgtccaacctcctcc 35
             |||||||||||||||||||||
Sbjct: 54030 ccccggcgtccaacctcctcc 54010

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>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
              sequence
          Length = 155106

 Score =  202 bits (102), Expect = 7e-49
 Identities = 132/142 (92%)
 Strand = Plus / Minus

                                                                          
Query: 264    ggtgcaacaatcaaatctggaagcccttctacagaggcatgtgaagatggctgctgaaat 323
              |||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| ||
Sbjct: 150138 ggtgcaacaatcaaatctggaagctcttttacagaggcatgtgaagatggccgctgagat 150079

                                                                          
Query: 324    caagaacctggacacagacttacagatgctagtatatgagaattataacaaatttataag 383
              |||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 150078 caagaatctggatacagacttacaaatgctagtatatgagaattataacaagtttatcag 150019

                                    
Query: 384    tgcaactgacactataaaaagg 405
               |||||||||||||||||||||
Sbjct: 150018 cgcaactgacactataaaaagg 149997



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                          
Query: 69     cgccgcgccgacggcaatggacgagaaggcccggcgcacgcgcgatctcctggccagttt 128
              ||||||||||  ||||||||||||||||||||||||||||||||| ||||| || || ||
Sbjct: 151086 cgccgcgccgcaggcaatggacgagaaggcccggcgcacgcgcgacctcctcgcgagctt 151027

                     
Query: 129    ctacaac 135
              |||||||
Sbjct: 151026 ctacaac 151020



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 59/67 (88%)
 Strand = Plus / Minus

                                                                          
Query: 200    ccgcgtcgccgctcgagtccatcaactccacctccttcaaccccgatgtctacatggacg 259
              ||||||||||||||||  ||||||||||  |||||||| | ||||| ||||||||| |||
Sbjct: 150949 ccgcgtcgccgctcgacaccatcaactcggcctccttcgatcccgacgtctacatgaacg 150890

                     
Query: 260    tcctggt 266
              |||||||
Sbjct: 150889 tcctggt 150883



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                       
Query: 403    aggatgaagactaacattgctggcatggagacaaacatgga 443
              ||||||||||||||||||| |||||||||  ||||||||||
Sbjct: 149893 aggatgaagactaacattgttggcatggaagcaaacatgga 149853



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 15     ccccggcgtccaacctcctcc 35
              |||||||||||||||||||||
Sbjct: 151175 ccccggcgtccaacctcctcc 151155

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>gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genomic sequence, complete
              sequence
          Length = 139946

 Score =  202 bits (102), Expect = 7e-49
 Identities = 132/142 (92%)
 Strand = Plus / Plus

                                                                          
Query: 264    ggtgcaacaatcaaatctggaagcccttctacagaggcatgtgaagatggctgctgaaat 323
              |||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| ||
Sbjct: 123554 ggtgcaacaatcaaatctggaagctcttttacagaggcatgtgaagatggccgctgagat 123613

                                                                          
Query: 324    caagaacctggacacagacttacagatgctagtatatgagaattataacaaatttataag 383
              |||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 123614 caagaatctggatacagacttacaaatgctagtatatgagaattataacaagtttatcag 123673

                                    
Query: 384    tgcaactgacactataaaaagg 405
               |||||||||||||||||||||
Sbjct: 123674 cgcaactgacactataaaaagg 123695



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Plus

                                                                          
Query: 69     cgccgcgccgacggcaatggacgagaaggcccggcgcacgcgcgatctcctggccagttt 128
              ||||||||||  ||||||||||||||||||||||||||||||||| ||||| || || ||
Sbjct: 122606 cgccgcgccgcaggcaatggacgagaaggcccggcgcacgcgcgacctcctcgcgagctt 122665

                     
Query: 129    ctacaac 135
              |||||||
Sbjct: 122666 ctacaac 122672



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                          
Query: 200    ccgcgtcgccgctcgagtccatcaactccacctccttcaaccccgatgtctacatggacg 259
              ||||||||||||||||  ||||||||||  |||||||| | ||||| ||||||||| |||
Sbjct: 122743 ccgcgtcgccgctcgacaccatcaactcggcctccttcgatcccgacgtctacatgaacg 122802

                     
Query: 260    tcctggt 266
              |||||||
Sbjct: 122803 tcctggt 122809



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                       
Query: 403    aggatgaagactaacattgctggcatggagacaaacatgga 443
              ||||||||||||||||||| |||||||||  ||||||||||
Sbjct: 123799 aggatgaagactaacattgttggcatggaagcaaacatgga 123839



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 15     ccccggcgtccaacctcctcc 35
              |||||||||||||||||||||
Sbjct: 122517 ccccggcgtccaacctcctcc 122537

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  202 bits (102), Expect = 7e-49
 Identities = 132/142 (92%)
 Strand = Plus / Plus

                                                                            
Query: 264      ggtgcaacaatcaaatctggaagcccttctacagaggcatgtgaagatggctgctgaaat 323
                |||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| ||
Sbjct: 30049035 ggtgcaacaatcaaatctggaagctcttttacagaggcatgtgaagatggccgctgagat 30049094

                                                                            
Query: 324      caagaacctggacacagacttacagatgctagtatatgagaattataacaaatttataag 383
                |||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 30049095 caagaatctggatacagacttacaaatgctagtatatgagaattataacaagtttatcag 30049154

                                      
Query: 384      tgcaactgacactataaaaagg 405
                 |||||||||||||||||||||
Sbjct: 30049155 cgcaactgacactataaaaagg 30049176



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Plus

                                                                            
Query: 69       cgccgcgccgacggcaatggacgagaaggcccggcgcacgcgcgatctcctggccagttt 128
                ||||||||||  ||||||||||||||||||||||||||||||||| ||||| || || ||
Sbjct: 30048087 cgccgcgccgcaggcaatggacgagaaggcccggcgcacgcgcgacctcctcgcgagctt 30048146

                       
Query: 129      ctacaac 135
                |||||||
Sbjct: 30048147 ctacaac 30048153



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                            
Query: 200      ccgcgtcgccgctcgagtccatcaactccacctccttcaaccccgatgtctacatggacg 259
                ||||||||||||||||  ||||||||||  |||||||| | ||||| ||||||||| |||
Sbjct: 30048224 ccgcgtcgccgctcgacaccatcaactcggcctccttcgatcccgacgtctacatgaacg 30048283

                       
Query: 260      tcctggt 266
                |||||||
Sbjct: 30048284 tcctggt 30048290



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 403      aggatgaagactaacattgctggcatggagacaaacatgga 443
                ||||||||||||||||||| |||||||||  ||||||||||
Sbjct: 30049280 aggatgaagactaacattgttggcatggaagcaaacatgga 30049320



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 15       ccccggcgtccaacctcctcc 35
                |||||||||||||||||||||
Sbjct: 30047998 ccccggcgtccaacctcctcc 30048018

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>gb|AY371488.1| Zea mays clone BAC 276N12-123C01, partial sequence
          Length = 213888

 Score =  194 bits (98), Expect = 2e-46
 Identities = 131/142 (92%)
 Strand = Plus / Minus

                                                                         
Query: 264   ggtgcaacaatcaaatctggaagcccttctacagaggcatgtgaagatggctgctgaaat 323
             |||||||||||| ||||||||||  |||||||| |||||||||||||||||| |||| ||
Sbjct: 37140 ggtgcaacaatccaatctggaaggtcttctacaaaggcatgtgaagatggctactgagat 37081

                                                                         
Query: 324   caagaacctggacacagacttacagatgctagtatatgagaattataacaaatttataag 383
             ||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||| ||
Sbjct: 37080 caagaacctagacacagatttacagatgctagtgtatgagaattataacaagtttattag 37021

                                   
Query: 384   tgcaactgacactataaaaagg 405
             ||||||||||||||||||||||
Sbjct: 37020 tgcaactgacactataaaaagg 36999



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                         
Query: 67    ggcgccgcgccgacggcaatggacgagaaggcccggcgcacgcgcgatctcctggccagt 126
             |||||||| ||| ||||||||||||||||||| |||||||||||||| ||||| || || 
Sbjct: 38777 ggcgccgcaccggcggcaatggacgagaaggcgcggcgcacgcgcgacctccttgctagc 38718

                      
Query: 127   ttctacaac 135
             |||||||||
Sbjct: 38717 ttctacaac 38709



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                         
Query: 200   ccgcgtcgccgctcgagtccatcaactccacctccttcaaccccgatgtctacatggacg 259
             |||| ||||| ||||| || |||||||||||||||||| | |||||  |||||||| | |
Sbjct: 38635 ccgcatcgcccctcgactcaatcaactccacctccttcgatcccgacatctacatgaatg 38576

                    
Query: 260   tcctggt 266
             |||||||
Sbjct: 38575 tcctggt 38569



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 403   aggatgaagactaacattgctggcatggagacaaacatgga 443
             ||||||||||||||||||| ||| |||||| |||| |||||
Sbjct: 36879 aggatgaagactaacattgttggaatggaggcaaatatgga 36839

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>ref|NM_116434.3| Arabidopsis thaliana unknown protein AT4G02030 mRNA, complete cds
          Length = 2572

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 87/103 (84%)
 Strand = Plus / Plus

                                                                       
Query: 310 atggctgctgaaatcaagaacctggacacagacttacagatgctagtatatgagaattat 369
           ||||||||||| || || || || ||||||||||| || |||||||| ||||| ||||| 
Sbjct: 303 atggctgctgagattaaaaatctcgacacagacttgcaaatgctagtctatgaaaattac 362

                                                      
Query: 370 aacaaatttataagtgcaactgacactataaaaaggatgaaga 412
           ||||| ||||| |||||||| || || || |||||||||||||
Sbjct: 363 aacaagtttatcagtgcaacagatacaatcaaaaggatgaaga 405

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>gb|BT014498.1| Lycopersicon esculentum clone 133869R, mRNA sequence
          Length = 2864

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 115/142 (80%)
 Strand = Plus / Plus

                                                                       
Query: 295 cagaggcatgtgaagatggctgctgaaatcaagaacctggacacagacttacagatgcta 354
           |||||||||||  | ||||||||||| || ||||| || || || ||| | || ||||| 
Sbjct: 394 cagaggcatgtcgaaatggctgctgagataaagaatctcgatactgacctgcaaatgctg 453

                                                                       
Query: 355 gtatatgagaattataacaaatttataagtgcaactgacactataaaaaggatgaagact 414
           |||||||| ||||| ||||| ||  ||||||| || ||||| || ||||||||||| |  
Sbjct: 454 gtatatgaaaattacaacaagttcgtaagtgccacagacacaattaaaaggatgaaaaac 513

                                 
Query: 415 aacattgctggcatggagacaa 436
           || |||| ||||||||||||||
Sbjct: 514 aatattgttggcatggagacaa 535

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>emb|AL161493.2|ATCHRIV5 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 5
          Length = 198220

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                          
Query: 310    atggctgctgaaatcaagaacctggacacagacttacagatgctagtatatgagaattat 369
              ||||||||||| || || || || ||||||||||| || |||||||| ||||| ||||| 
Sbjct: 121812 atggctgctgagattaaaaatctcgacacagacttgcaaatgctagtctatgaaaattac 121871

                                  
Query: 370    aacaaatttataagtgcaac 389
              ||||| ||||| ||||||||
Sbjct: 121872 aacaagtttatcagtgcaac 121891

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>gb|AF001308.1|ATAF001308 Arabidopsis thaliana BAC T10M13 from chromosome IV, from 10.8 cM to
             11.6 cM, complete sequence
          Length = 105654

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                         
Query: 310   atggctgctgaaatcaagaacctggacacagacttacagatgctagtatatgagaattat 369
             ||||||||||| || || || || ||||||||||| || |||||||| ||||| ||||| 
Sbjct: 19208 atggctgctgagattaaaaatctcgacacagacttgcaaatgctagtctatgaaaattac 19267

                                 
Query: 370   aacaaatttataagtgcaac 389
             ||||| ||||| ||||||||
Sbjct: 19268 aacaagtttatcagtgcaac 19287

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>dbj|AP006137.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT37K17, TM0239,
             complete sequence
          Length = 106506

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                         
Query: 310   atggctgctgaaatcaagaacctggacacagacttacagatgctagtatatgagaattat 369
             ||||| |||||||||||||| || ||||| ||||| || ||||| || || |||||||| 
Sbjct: 46502 atggccgctgaaatcaagaatctcgacactgacttgcaaatgctggtctacgagaattac 46443

                  
Query: 370   aacaa 374
             |||||
Sbjct: 46442 aacaa 46438

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>ref|NM_197555.1| Oryza sativa (japonica cultivar-group) putative nucleoid DNA
           binding protein (OSJNBa0040D23.14), mRNA
          Length = 1194

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 62  ccgtcggcgccgcgccgacggc 83
           ||||||||||||||||||||||
Sbjct: 872 ccgtcggcgccgcgccgacggc 893

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>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete
             sequence
          Length = 134102

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 62    ccgtcggcgccgcgccgacggc 83
             ||||||||||||||||||||||
Sbjct: 82978 ccgtcggcgccgcgccgacggc 82999

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>ref|XM_625221.1| PREDICTED: Apis mellifera similar to CG15087-PA (LOC552845), mRNA
          Length = 3172

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 352  ctagtatatgagaattataacaaatttata 381
            ||||||||||| |||||||| |||||||||
Sbjct: 1014 ctagtatatgaaaattataataaatttata 1043

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 62       ccgtcggcgccgcgccgacggc 83
                ||||||||||||||||||||||
Sbjct: 20442830 ccgtcggcgccgcgccgacggc 20442851

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 62       ccgtcggcgccgcgccgacggc 83
                ||||||||||||||||||||||
Sbjct: 20454102 ccgtcggcgccgcgccgacggc 20454123

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>gb|AY040333.1| Dictyostelium mucoroides 18S ribosomal RNA gene, partial sequence
          Length = 1849

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 443 aacaactactatcaaagataa 463
           |||||||||||||||||||||
Sbjct: 710 aacaactactatcaaagataa 690

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>gb|AC092417.2| Homo sapiens chromosome 3 clone RP11-90M23, complete sequence
          Length = 167263

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 424   ggcatggagacaaacatggaa 444
             |||||||||||||||||||||
Sbjct: 96361 ggcatggagacaaacatggaa 96381

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>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 48     cgaaatggccaccaccgtcggcgcc 72
              |||| ||||||||||||||||||||
Sbjct: 720420 cgaagtggccaccaccgtcggcgcc 720444

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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 74      cgccgacggcaatggacgagaaggc 98
               ||||| |||||||||||||||||||
Sbjct: 3602486 cgccgccggcaatggacgagaaggc 3602462

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>dbj|AP006193.1| Homo sapiens genomic DNA, chromosome 3, clone:RP11-815I22, complete
            sequence
          Length = 205834

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 424  ggcatggagacaaacatggaa 444
            |||||||||||||||||||||
Sbjct: 7520 ggcatggagacaaacatggaa 7540

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>dbj|AP000500.1| Homo sapiens genomic DNA, chromosome 3p21.3, clone:603 to 320,
              anti-oncogene region, section 3/3
          Length = 254437

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 424    ggcatggagacaaacatggaa 444
              |||||||||||||||||||||
Sbjct: 108469 ggcatggagacaaacatggaa 108449

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>dbj|AB026899.1| Homo sapiens DNA, DLEC1 to ORCTL4 gene region, section 2/2 (downstream
             sequence from ORCTL4)
          Length = 80485

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 424   ggcatggagacaaacatggaa 444
             |||||||||||||||||||||
Sbjct: 71140 ggcatggagacaaacatggaa 71120

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>gb|AC101277.16| Mus musculus chromosome 1, clone RP23-101P2, complete sequence
          Length = 207021

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 319   gaaatcaagaacctggacac 338
             ||||||||||||||||||||
Sbjct: 66010 gaaatcaagaacctggacac 65991

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>ref|XM_550542.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2725

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 194  ccgccaccgcgtcgccgctc 213
            ||||||||||||||||||||
Sbjct: 1019 ccgccaccgcgtcgccgctc 1000

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>gb|AC134898.4| Mus musculus BAC clone RP23-478H2 from chromosome 14, complete sequence
          Length = 213348

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 384    tgcaactgacactataaaaa 403
              ||||||||||||||||||||
Sbjct: 124197 tgcaactgacactataaaaa 124178

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>gb|AC092350.4| Homo sapiens chromosome 16 clone RP11-29G3, complete sequence
          Length = 174387

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 366   ttataacaaatttataagtg 385
             ||||||||||||||||||||
Sbjct: 76618 ttataacaaatttataagtg 76599

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>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16
          Length = 349142

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     tcggcgccgcgccgacggca 84
              ||||||||||||||||||||
Sbjct: 279435 tcggcgccgcgccgacggca 279416

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>gb|AF499451.1| Vitis vinifera polygalacturonase-inhibiting protein (pgip1) gene,
           complete cds
          Length = 1002

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 29  ctcctccccaacctcggcgc 48
           ||||||||||||||||||||
Sbjct: 502 ctcctccccaacctcggcgc 521

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 194     ccgccaccgcgtcgccgctc 213
               ||||||||||||||||||||
Sbjct: 1040014 ccgccaccgcgtcgccgctc 1039995

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 59       ccaccgtcggcgccgcgccg 78
                ||||||||||||||||||||
Sbjct: 16184401 ccaccgtcggcgccgcgccg 16184420

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>gb|AF305093.1|AF305093 Vitis vinifera polygalacturonase inhibiting protein mRNA, complete
           cds
          Length = 1002

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 29  ctcctccccaacctcggcgc 48
           ||||||||||||||||||||
Sbjct: 502 ctcctccccaacctcggcgc 521

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>dbj|AP003457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0660D08
          Length = 146915

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   ccgccaccgcgtcgccgctc 213
             ||||||||||||||||||||
Sbjct: 16237 ccgccaccgcgtcgccgctc 16218

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>dbj|AP003564.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0062J13
          Length = 152837

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 194    ccgccaccgcgtcgccgctc 213
              ||||||||||||||||||||
Sbjct: 102887 ccgccaccgcgtcgccgctc 102868

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>dbj|AP005067.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0487H05
          Length = 176057

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    ccaccgtcggcgccgcgccg 78
             ||||||||||||||||||||
Sbjct: 18888 ccaccgtcggcgccgcgccg 18907

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>dbj|AP005065.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0046H03
          Length = 137020

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    ccaccgtcggcgccgcgccg 78
             ||||||||||||||||||||
Sbjct: 76730 ccaccgtcggcgccgcgccg 76749

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>dbj|AK099129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042G04, full
           insert sequence
          Length = 2644

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 194 ccgccaccgcgtcgccgctc 213
           ||||||||||||||||||||
Sbjct: 988 ccgccaccgcgtcgccgctc 969

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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 60      caccgtcggcgccgcgccga 79
               ||||||||||||||||||||
Sbjct: 1675196 caccgtcggcgccgcgccga 1675215

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>dbj|AK065857.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041P08, full
            insert sequence
          Length = 2725

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 194  ccgccaccgcgtcgccgctc 213
            ||||||||||||||||||||
Sbjct: 1019 ccgccaccgcgtcgccgctc 1000

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>gb|AC167667.4| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940123D9, complete sequence
          Length = 121336

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 60    caccgtcggcgccgcgccgacggc 83
             |||||||||||||||| |||||||
Sbjct: 88899 caccgtcggcgccgcgacgacggc 88922

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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 195    cgccaccgcgtcgccgctcg 214
              ||||||||||||||||||||
Sbjct: 554801 cgccaccgcgtcgccgctcg 554782

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>gb|AC140367.3| Mus musculus BAC clone RP24-226L19 from 1, complete sequence
          Length = 183563

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   gaaatcaagaacctggacac 338
             ||||||||||||||||||||
Sbjct: 25487 gaaatcaagaacctggacac 25506


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,807,446
Number of Sequences: 3902068
Number of extensions: 3807446
Number of successful extensions: 78685
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78120
Number of HSP's gapped (non-prelim): 565
length of query: 467
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 445
effective length of database: 17,147,199,772
effective search space: 7630503898540
effective search space used: 7630503898540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result