>Y004_MYCSM (Q50434) UPF0232 protein in recF-gyrB intergenic region|
          Length = 194

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 32/98 (32%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
 Frame = -3

Query: 433 TAPIDGDRAEV-----VQPSRLILVDGPALGLRHLHALRGILGAIGAERGVGDGAPLLAR 269
           T P D D  E        P  L  + G  L  R L   RG   + G + G G   P  AR
Sbjct: 2   TGPFDDDGPEEDAPVPAPPDHLAGLRGIDLVRRTLEEARGAARSQGKDVGRGRSGP--AR 59

Query: 268 RRGLHFASLAGSGPAPTAPD--------RDLAAGLGFS 179
           R G +      SGP P A D        +DLA   G+S
Sbjct: 60  RVGGNRRRRTWSGPGPDARDPQLLGAVTQDLAKSRGWS 97

>VPS54_YEAST (Q12071) Vacuolar protein sorting protein 54 (CPF1 genetically|
           interacting protein 1) (Temperature-sensitive clathrin
           synthetic mutation protein 3)
          Length = 889

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 308 RTNGAEDAAERMKMAQSEGRAIYQDESGGLDDFCSITIDGSGGLSDDIL 454
           ++ G + AA R K+   EG      +SG      S TI+G   L+DD+L
Sbjct: 10  KSQGLQKAAGRPKIVVPEGSPSRNSDSG------SFTIEGDTSLNDDLL 52

>MURD_XANCP (Q8P775) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 468

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
 Frame = -3

Query: 343 HALRGILGAIGAERGV---GDGAPLLAR-----RRGLHFASLAGSGPA 224
           HA++    A+GA+ GV     GAP          RG HFA LAG  PA
Sbjct: 410 HAMQLARSALGAQGGVLLLSPGAPSFGVYSDYVARGRHFAQLAGFDPA 457

>MURD_XANC8 (Q4UWX9) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 468

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
 Frame = -3

Query: 343 HALRGILGAIGAERGV---GDGAPLLAR-----RRGLHFASLAGSGPA 224
           HA++    A+GA+ GV     GAP          RG HFA LAG  PA
Sbjct: 410 HAMQLARSALGAQGGVLLLSPGAPSFGVYSDYVARGRHFAQLAGFDPA 457

>PPR3D_HUMAN (O95685) Protein phosphatase 1 regulatory subunit 3D (Protein|
           phosphatase 1, regulatory subunit 6) (Protein
           phosphatase 1-binding subunit R6)
          Length = 299

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 389 PTHPGRWPCPRTAPSSCAPR 330
           P  PGR P P  APS C PR
Sbjct: 44  PGSPGRAPPPTPAPSGCDPR 63

>TIMP4_MOUSE (Q9JHB3) Metalloproteinase inhibitor 4 precursor (TIMP-4) (Tissue|
           inhibitor of metalloproteinases-4)
          Length = 224

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 371 WPCPRTAPSSCAPRHPRRHW 312
           WP  R    SCAP HP++H+
Sbjct: 22  WPPGRGEACSCAPAHPQQHF 41

>PDC1_MAIZE (P28516) Pyruvate decarboxylase isozyme 1 (EC 4.1.1.1) (PDC)|
          Length = 610

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 415 DRAEVVQPSRLILVDGPALG 356
           ++A +VQP R+++ DGPA G
Sbjct: 349 EKAVIVQPDRMVVGDGPAFG 368

>Y310_HALSA (Q9HSB6) UPF0245 protein Vng0310c|
          Length = 387

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +2

Query: 293 PDAPLRTNGAEDAAERMKMAQSEGRAIYQDESGGLDDFCSITIDGSGGLSDD 448
           PD   RT    DAA+R  +A S       +E+G  D  C   +D    L+DD
Sbjct: 190 PDEIRRTVSVRDAADREHLALSTATITTIEEAGSADRVC---VDTGSLLADD 238


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,626,376
Number of Sequences: 219361
Number of extensions: 795078
Number of successful extensions: 4086
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4080
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)