>GLIS3_MOUSE (Q6XP49) Zinc finger protein GLIS3 (GLI-similar 3)|
          Length = 780

 Score = 33.1 bits (74), Expect = 0.35
 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
 Frame = +2

Query: 113 NVKLHSGSTDTEARQVKCASPNARRLDTKSKTFGSMANRKRLQVVTSDTETRPPTCGT-- 286
           N+K+H  S  T  +   C  P  ++  + S      A  +R  + T     + P C    
Sbjct: 428 NLKIHLRS-HTGEKPYLCQHPGCQKAFSNSS---DRAKHQRTHLDTKPYACQIPGCTKRY 483

Query: 287 --PSAGRLGKKNESSEDLLNRKKLRIATDMEPPMSSEGL----LSPPKSSKRHAEH 436
             PS+ R   K  SS +   RKKLR +T++ P + ++ L    L P  S    A+H
Sbjct: 484 TDPSSLRKHVKAHSSREQQARKKLRSSTELHPDLLTDCLAVQPLQPATSPGDAADH 539

>NET1_YEAST (P47035) Nucleolar protein NET1|
          Length = 1189

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 2/140 (1%)
 Frame = +2

Query: 2    QDSESMSNPKTLQTALANLDAQQIACGTLITDHLSANNVKLHSGSTDTEARQVKCASPNA 181
            QD+   +N K  + + +   +Q+      +TDHL   NV+L   S + + + +K    N+
Sbjct: 903  QDANDKNNSKEKEDSKSKQVSQK---KLKMTDHLKEGNVQLPKPSANDKLKDLKAKFTNS 959

Query: 182  RRLDTKSKTFGSMANRKRLQVVTSDTETRPPTCGTPSAGRLGKKNESSEDLLNRKKLRIA 361
            + L       G ++N K      +D ++      T         +   E   +RK  R+ 
Sbjct: 960  KTLVPP----GIISNEKN-NSSANDDDSSSSGSSTEDESSSSSSSSDEETSTSRKARRVV 1014

Query: 362  --TDMEPPMSSEGLLSPPKS 415
              T  EP  SS  + +P  S
Sbjct: 1015 VNTPREPVRSSSKIEAPSPS 1034

>GLIS3_HUMAN (Q8NEA6) Zinc finger protein GLIS3 (GLI-similar 3) (Zinc finger|
           protein 515)
          Length = 774

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
 Frame = +2

Query: 113 NVKLHSGSTDTEARQVKCASPNARRLDTKSKTFGSMANRKRLQVVTSDTETRPPTCGT-- 286
           N+K+H  S  T  +   C  P  ++  + S      A  +R  + T     + P C    
Sbjct: 427 NLKIHLRS-HTGEKPYLCQHPGCQKAFSNSS---DRAKHQRTHLDTKPYACQIPGCTKRY 482

Query: 287 --PSAGRLGKKNESSEDLLNRKKLRIATDMEPPMSSEGL 397
             PS+ R   K  SS++   RKKLR +T++ P + ++ L
Sbjct: 483 TDPSSLRKHVKAHSSKEQQARKKLRSSTELHPDLLTDCL 521

>NOL11_HUMAN (Q9H8H0) Nucleolar protein 11|
          Length = 719

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 284 TPSAGRLGKKN-ESSEDLLNRKKLRIATDMEPPMSSEGLLSPPKSSKRHAE 433
           TP    LG +N E S  +L R+K+ ++   E P S + L +  K S++H E
Sbjct: 364 TPQGCGLGFQNSEQSRRILRRRKIEVSLQPEVPPSKQLLSTIMKDSEKHIE 414

>IFI4_MOUSE (P15092) Interferon-activable protein 204 (Ifi-204)|
           (Interferon-inducible protein p204)
          Length = 640

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
 Frame = +2

Query: 104 SANNVKLHSGSTDTEARQVKCASPNARRLDTKSKTFGSMANRKRLQVVTSDTETRPPT-- 277
           S  +  L S   +T A Q + ++  A     +++T  + A     Q  TS  + R  T  
Sbjct: 109 STTSHMLASERGETSATQEETSTAQAGTSTAQARTSTAQARTSTAQARTSTAQARTSTAQ 168

Query: 278 CGTPSAGRLGKKNESSEDLLNRKKLRIATDMEPPMSSEGLLSPPKSSKRHAEHASSSNL 454
            GT +A    K+    E+    KK + A + + P   E   +  +S   H+  ++SSN+
Sbjct: 169 AGTSTA---QKRKSMREEETGVKKSKAAKEPDQPPCCEEPTAMCQSPILHSSSSASSNI 224

>ZFH2_DROME (P28167) Zinc finger protein 2 (Zinc finger homeodomain protein 2)|
          Length = 3005

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +2

Query: 248  TSDTETRPPTCGTPSAGRLGKKNESSEDLLNRKKLRIATDMEPP 379
            +SD  +RPP+   P++G  G    S  DLLN++   + ++M PP
Sbjct: 2069 SSDVLSRPPS---PNSGAAGNVYGSMNDLLNQQLENMGSNMGPP 2109

>VLPA_MYCHR (P29228) Variant surface antigen A precursor (VlpA prolipoprotein)|
          Length = 176

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 5/122 (4%)
 Frame = +2

Query: 44  ALANLDAQQIACGTLITDHLSANNVKLHSGSTDTEARQVKCASPNARRLDTKSKTFGSMA 223
           ALA +    I+CG   TD+ S+ + +  SG+T+T        S N       S +     
Sbjct: 19  ALAAIPLIAISCGQ--TDNNSSQSQQPGSGTTNTSGGTNSSGSTNGTAGTNSSGSTNGSG 76

Query: 224 NRKRLQVVTSDTETRPPTCGTPSAGRLGK-----KNESSEDLLNRKKLRIATDMEPPMSS 388
           N    +  T +  T     G+ +  + G         +SE  +N +K       E P ++
Sbjct: 77  NGSNSETNTGNKTTSESNSGSSTGSQAGTTTNTGSGSNSESGMNSEKTENTQQSEAPGTN 136

Query: 389 EG 394
            G
Sbjct: 137 TG 138

>CCD71_MOUSE (Q8VEG0) Coiled-coil domain-containing protein 71|
          Length = 433

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 32/128 (25%), Positives = 44/128 (34%), Gaps = 4/128 (3%)
 Frame = +2

Query: 41  TALANLDAQQIACGTLITDHLSANNVKLHSGSTDTEARQVKCASPNARRLDTKSKTFGSM 220
           +AL     Q  A  TLI    +  +V      T     + K A P A R   K+      
Sbjct: 255 SALGPKTVQAQASQTLIKAARAHASVAQTQTKTVRVRAKAKQAKPKAARAKAKAAVVRDK 314

Query: 221 ANRKRLQVVTSDTETR----PPTCGTPSAGRLGKKNESSEDLLNRKKLRIATDMEPPMSS 388
           A  K +Q      +T+    P        GR  +KN S      RKK      + P   +
Sbjct: 315 AKDKVIQAKAKAAQTKHKGKPKGSVQTRTGRANRKNSSETVGRKRKKAEETKGLPPKKRA 374

Query: 389 EGLLSPPK 412
             +  PPK
Sbjct: 375 RCVPRPPK 382

>NIA_BEABA (P43100) Nitrate reductase [NADPH] (EC 1.7.1.3) (NR)|
          Length = 894

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 168 PAQMPGGWIQRVKPSGAWQIVRGF 239
           PA MPGGW++RVK  G   +  GF
Sbjct: 485 PALMPGGWMERVKRRGG-NLTNGF 507

>NOL11_PONPY (Q5RB52) Nucleolar protein 11|
          Length = 718

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 284 TPSAGRLGKKN-ESSEDLLNRKKLRIATDMEPPMSSEGLLSPPKSSKRHAE 433
           TP    LG +N E S  +L R+K  ++   E P S + L +  K S++H E
Sbjct: 364 TPQGCGLGFQNSEQSRRILRRRKTEVSLQPEVPPSKQLLSTIMKDSEKHIE 414

>MICA1_HUMAN (Q8TDZ2) NEDD9-interacting protein with calponin homology and LIM|
            domains (Molecule interacting with CasL protein 1)
          Length = 1067

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
 Frame = +2

Query: 194  TKSKTFGSMANRKRLQVVTSDTETRPPTCGTPSAGRLGKKNESSEDLLNRKKLRIATDME 373
            T  K  GS    +  ++ T    + PP   TP+A + G           R+++R+++   
Sbjct: 754  TDHKAEGSDRGPESPELPTPSENSMPPGLSTPTASQEGAGPVPDPSQPTRRQIRLSSPER 813

Query: 374  PPMSSEGLL---------SPPKSSKRHAEHASSSN 451
              +SS  L           PP+S    A HA  S+
Sbjct: 814  QRLSSLNLTPDPEMEPPPKPPRSCSALARHALESS 848

>CYLC1_HUMAN (P35663) Cylicin-1 (Cylicin I) (Multiple-band polypeptide I)|
          Length = 651

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 24/115 (20%), Positives = 50/115 (43%)
 Frame = +2

Query: 113 NVKLHSGSTDTEARQVKCASPNARRLDTKSKTFGSMANRKRLQVVTSDTETRPPTCGTPS 292
           +VK  + STD E+   K    + ++   K K      + K+    T DTE+         
Sbjct: 325 DVKKDTESTDAESGDSKDERKDTKKDKKKLKKDDKKKDTKKYPEST-DTESGDAKDARND 383

Query: 293 AGRLGKKNESSEDLLNRKKLRIATDMEPPMSSEGLLSPPKSSKRHAEHASSSNLR 457
           +  L K +++ +   + KK+  +TD E  + S+      K  K+ ++  +  +++
Sbjct: 384 SRNLKKASKNDDKKKDAKKITFSTDSESELESKESQKDEKKDKKDSKTDNKKSVK 438

>SWC4_ASHGO (Q752S6) SWR1-complex protein 4|
          Length = 488

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 16/70 (22%), Positives = 32/70 (45%)
 Frame = +2

Query: 182 RRLDTKSKTFGSMANRKRLQVVTSDTETRPPTCGTPSAGRLGKKNESSEDLLNRKKLRIA 361
           ++L  + +    + ++KR++V T       P   +PS GR      ++  +  ++KL + 
Sbjct: 319 QQLQLQHQQHHQLRDQKRIEVKTDPVTPGSPKQDSPSPGRKASDQSAAPRMNKKQKLEMQ 378

Query: 362 TDMEPPMSSE 391
           T M     SE
Sbjct: 379 TAMRRKQDSE 388

>RGA2_YEAST (Q06407) Rho-type GTPase-activating protein 2|
          Length = 1009

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 14/122 (11%)
 Frame = +2

Query: 125 HSG----STDTEARQVKCASPNARRLDTKSKTFGSMANRKRLQVVTSDTETRPPTCGTPS 292
           HSG    ST T  R+ K       R  + S  + ++       V   + +         S
Sbjct: 470 HSGWGVSSTHTNIRKSKAKKNPVSRGQSDSTIYNTLPQHGNFTVPEFNHKK-----AQSS 524

Query: 293 AGRLGKKNESSEDLLNRK----------KLRIATDMEPPMSSEGLLSPPKSSKRHAEHAS 442
            G + KK  S++   NR+             IA    PP+ S  L   P  S   A H S
Sbjct: 525 LGSISKKQNSNDTATNRRINGSFTSSSSGHHIAMFRTPPLESGPLFKRPSLSSESAHHRS 584

Query: 443 SS 448
           SS
Sbjct: 585 SS 586

>U360_SCHJA (Q5DHJ5) UPF0360 protein|
          Length = 330

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 5   DSESMSNPKTLQTALANLDAQQIACGTLITDHLSANNVKLHSGSTDTEARQVKCASPNAR 184
           DSE ++ P+  Q+   NLD         + D    N+  L   +++   R +K AS +  
Sbjct: 13  DSEDIATPRLQQSLAENLDK--------LRDSYGDNSKLLTKTNSELANRSIKTASKSVI 64

Query: 185 RLDTKSK 205
           R+D+ S+
Sbjct: 65  RMDSSSE 71

>KI67_HUMAN (P46013) Antigen KI-67|
          Length = 3256

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 26/100 (26%), Positives = 45/100 (45%)
 Frame = +2

Query: 134  STDTEARQVKCASPNARRLDTKSKTFGSMANRKRLQVVTSDTETRPPTCGTPSAGRLGKK 313
            +TD +  ++ C SP    +DT + T      ++ L+    + E       TPSA   GK 
Sbjct: 2332 TTDEKTTKIACKSPQPDPVDTPAST--KQRPKRNLRKADVEEEFLALRKRTPSA---GKA 2386

Query: 314  NESSEDLLNRKKLRIATDMEPPMSSEGLLSPPKSSKRHAE 433
             ++ +  ++ +K  I T +E P+    LL     SKR  +
Sbjct: 2387 MDTPKPAVSDEK-NINTFVETPVQKLDLLGNLPGSKRQPQ 2425

>LBR_CHICK (P23913) Lamin-B receptor|
          Length = 637

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = +2

Query: 197 KSKTFGSMANRKRLQVVTSDTETRPPTCGTPSAGRLGKKNESSEDLLNRKKLRIATDMEP 376
           KS++  S  +R+      S + +R  + G P+ GR    + S E   ++KK+   T + P
Sbjct: 64  KSQSSSSSPSRR------SRSRSRSRSPGRPAKGRRRSSSHSREHKEDKKKIIQETSLAP 117

Query: 377 PMSSE 391
           P  SE
Sbjct: 118 PKPSE 122

>NIA_LEPMC (P36842) Nitrate reductase [NADPH] (EC 1.7.1.3) (NR)|
          Length = 893

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 168 PAQMPGGWIQRVKPSG 215
           PA +PGGW++RVK +G
Sbjct: 485 PALIPGGWMERVKKAG 500

>NOG2_CANGA (Q6FWS1) Nucleolar GTP-binding protein 2|
          Length = 494

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 170 SPNARRLDTKS--KTFGSMANRKRLQVVTSDTE 262
           SP AR L+T+S  +TFG  A RK+ +V  S  E
Sbjct: 126 SPRARILETESFDQTFGPKAQRKKPRVAASSLE 158

>TXND2_RAT (Q5XHX6) Thioredoxin domain-containing protein 2|
           (Spermatid-specific thioredoxin-1) (Sptrx-1)
          Length = 550

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
 Frame = +2

Query: 125 HSGSTDTEARQVKCASPNARRLDTKSKTFGSMANRKRLQVVT---SDTETRPPTCGTPSA 295
           H GS  +  +  +    +  +  + SK   S    K L + T     +  +P   GT   
Sbjct: 92  HEGSPKSSTKNTQLKQEDISKTSSYSKQTNSSNIPKSLAITTYPKQGSTLKPAANGTHD- 150

Query: 296 GRLGKKNESSEDLLNRKKLRIATDMEPPMSSEGLLSPPKSSK 421
            R  +K +SSEDL+  KK  I    E  + S+     PKSS+
Sbjct: 151 -REAEKPKSSEDLIQSKKGDIFKPSEDSIQSK-KGDMPKSSE 190

>ZYG1_CAEBR (Q621J7) Probable serine/threonine-protein kinase zyg-1 (EC|
           2.7.11.1) (Zygote defective protein 1)
          Length = 709

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 257 TETRPPTCGTPSAGRLGKKNESSEDLLNR 343
           T+  PPT G P+   L K+N S+ DL+ R
Sbjct: 202 TKHTPPTKGPPNLESLKKRNPSAADLVER 230

>PKD2_HUMAN (Q13563) Polycystin-2 (Autosomal dominant polycystic kidney disease|
           type II protein) (Polycystwin) (R48321)
          Length = 968

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 14/81 (17%)
 Frame = +2

Query: 218 MANRKRLQVVTSDTETRPPTCGTPSAGRL--------------GKKNESSEDLLNRKKLR 355
           M N  R+Q        RPP    P  GRL              G+  E     +  +++R
Sbjct: 1   MVNSSRVQPQQPGDAKRPPAPRAPDPGRLMAGCAAVGASLAAPGRLCEQRGLEIEMQRIR 60

Query: 356 IATDMEPPMSSEGLLSPPKSS 418
            A   +PP  +    SPP SS
Sbjct: 61  QAAARDPPAGAAASPSPPLSS 81

>DNLI_METKA (Q8TWN3) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase|
           [ATP])
          Length = 559

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 24/89 (26%), Positives = 36/89 (40%)
 Frame = +2

Query: 191 DTKSKTFGSMANRKRLQVVTSDTETRPPTCGTPSAGRLGKKNESSEDLLNRKKLRIATDM 370
           D +    GS   RK +   T  T++      T    RLG    ++E+LL R+K     D 
Sbjct: 54  DPRDLGIGSKLMRKVIATATGSTDSEV----TELFKRLGDLGLTAEELLKRRKTSTLLDS 109

Query: 371 EPPMSSEGLLSPPKSSKRHAEHASSSNLR 457
            P M  E   +  K ++   E A    +R
Sbjct: 110 RPLMVGEVRETFEKIAEVEGEGAVKRKMR 138


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,532,347
Number of Sequences: 219361
Number of extensions: 1249193
Number of successful extensions: 3495
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3493
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)