>RCOR2_XENLA (Q6NRZ0) REST corepressor 2|
          Length = 503

 Score = 33.9 bits (76), Expect = 0.22
 Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
 Frame = +3

Query: 120 MSSTRKVRNVNKRYAKINEDWPEKDATVVHKNKVRKKKLS-DLGSQWSKDELEHFYGAYR 296
           +S  R+V+N+ +  + +      K++     +++R  +L+  L ++W+ DE      A R
Sbjct: 292 ISLKRQVQNIKQMNSSL------KESLEGGISEMRPPELNIKLNARWTTDEQLLAVQAVR 345

Query: 297 KYGKDWRKVAGAVHDRTSDMVEALYNMNRAYLSLPE 404
           KYGKD++ ++  + ++T   V+  +   R   +L E
Sbjct: 346 KYGKDFQAISEVLGNKTPSQVKTFFISYRRRFNLEE 381

>SWI3_YEAST (P32591) Transcription regulatory protein SWI3 (SWI/SNF complex|
           component SWI3) (Transcription factor TYE2)
          Length = 825

 Score = 32.7 bits (73), Expect = 0.49
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 228 KKLSDLGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSD 353
           K L  +   WSK++L+      +++G DW KVA  V +++ +
Sbjct: 518 KILEQIDENWSKEDLQKLLKGIQEFGADWYKVAKNVGNKSPE 559

>SMRC1_MOUSE (P97496) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily C member 1 (SWI/SNF
           complex 155 kDa subunit) (BRG1-associated factor 155)
           (SWI3-related protein)
          Length = 1104

 Score = 32.7 bits (73), Expect = 0.49
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 201 VVHKNKVRKKKLSDLGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSD 353
           +  K  + K K +  G +W++ E      A   Y  DW KV+  V  RT D
Sbjct: 604 IYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQD 654

>SMRC1_HUMAN (Q92922) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily C member 1 (SWI/SNF
           complex 155 kDa subunit) (BRG1-associated factor 155)
          Length = 1105

 Score = 32.7 bits (73), Expect = 0.49
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 201 VVHKNKVRKKKLSDLGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSD 353
           +  K  + K K +  G +W++ E      A   Y  DW KV+  V  RT D
Sbjct: 605 IYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQD 655

>RCOR_DROME (Q59E36) REST corepressor (CoREST)|
          Length = 657

 Score = 32.0 bits (71), Expect = 0.83
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 243 LGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALYNMNRAYLSLPE 404
           + ++W  DE++    A R+YGK++  +A  V  +T   V   Y  NR   +L +
Sbjct: 370 ISARWLPDEIQVALLAIREYGKNFPTIAKVVATKTEAHVRTFYLNNRRRYNLDQ 423

>V362_ASFB7 (P23166) K'362 protein|
          Length = 362

 Score = 32.0 bits (71), Expect = 0.83
 Identities = 14/47 (29%), Positives = 29/47 (61%)
 Frame = +3

Query: 264 DELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALYNMNRAYLSLPE 404
           + +++FY  YR + KDWR + G   +  SD+ E +Y++ +  +++ E
Sbjct: 194 EAIQYFYQRYRHF-KDWRLICGLSFNNVSDLHE-IYHIKKVDMNIDE 238

>RCOR2_RAT (Q5FWT8) REST corepressor 2|
          Length = 523

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +3

Query: 249 SQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALYNMNRAYLSLPE 404
           S+W+ DE      A R+YGKD+  +A  + ++T   V+  +   R   +L E
Sbjct: 330 SRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKTFFVSYRRRFNLEE 381

>RCOR2_MOUSE (Q8C796) REST corepressor 2 (M-CoREST)|
          Length = 523

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +3

Query: 249 SQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALYNMNRAYLSLPE 404
           S+W+ DE      A R+YGKD+  +A  + ++T   V+  +   R   +L E
Sbjct: 330 SRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKTFFVSYRRRFNLEE 381

>RCOR2_HUMAN (Q8IZ40) REST corepressor 2|
          Length = 523

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +3

Query: 249 SQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALYNMNRAYLSLPE 404
           S+W+ DE      A R+YGKD+  +A  + ++T   V+  +   R   +L E
Sbjct: 330 SRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKTFFVSYRRRFNLEE 381

>RCOR2_BRARE (Q6P116) REST corepressor 2|
          Length = 536

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +3

Query: 243 LGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALYNMNRAYLSLPE 404
           + S+W+ +E      A R+YGKD+  +A  + ++T   V + +   R   +L E
Sbjct: 329 INSRWTTEEQLLAVQAVRRYGKDFAAIADVIGNKTVAQVSSFFVSYRRRFNLEE 382

>PUPA_PSEPU (P25184) Ferric-pseudobactin 358 receptor precursor|
          Length = 819

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
 Frame = +3

Query: 249 SQWSKDEL---EHFYGAYRKYGKDWR-KVAGAVHDRTSDMVEALYNM--NRAYLSLPEGT 410
           ++W  D+     + +G  ++   DW+ K+A A  D   D   + Y+   NR+YL L   T
Sbjct: 388 ARWGYDDYTTTNYTFGLEQQLAHDWQFKLAAAYMDVDRDSFSSYYSTTTNRSYLELDGST 447

Query: 411 ATAAGLI 431
             +AG++
Sbjct: 448 EISAGIV 454

>VTS1_SCHPO (Q9P6R7) Protein vts1|
          Length = 713

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -2

Query: 390 NMPYSCCKEPPPYQMFYHGPHQPPSSNLFHIFYKLHRSAP---THLCSTENQGRIIFSFA 220
           N+ YS    PPP ++  H P   P  +  ++FY+ ++  P   T   S+  +G+   S +
Sbjct: 365 NISYSPPPPPPPPELLNHSPKSRPLGDKPYLFYRNNQIGPRTRTEGRSSITEGKPFLSSS 424

Query: 219 LYF 211
           L F
Sbjct: 425 LRF 427

>MYB_DROME (P04197) Myb protein|
          Length = 657

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 255 WSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALYN--MNRAY 389
           W++ E E  Y A+ + G  W K+A  +  RT + ++  +N  M R Y
Sbjct: 191 WTEKEDEIIYQAHLELGNQWAKIAKRLPGRTDNAIKNHWNSTMRRKY 237

>RAD50_AQUAE (O67124) Probable DNA double-strand break repair rad50 ATPase|
          Length = 978

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 23/89 (25%), Positives = 39/89 (43%)
 Frame = +3

Query: 132 RKVRNVNKRYAKINEDWPEKDATVVHKNKVRKKKLSDLGSQWSKDELEHFYGAYRKYGKD 311
           +K+ ++ +   K+  +  E    +    K R KKL +L  +  K++LEH    YRK    
Sbjct: 532 QKINSLKEEMEKLRNEVEELRKEIPENLKERIKKLEELRIE--KEKLEHKLNKYRK---- 585

Query: 312 WRKVAGAVHDRTSDMVEALYNMNRAYLSL 398
                 A+ DR     EA   +++A   L
Sbjct: 586 ------ALEDRQKQKEEAQAKLHKAQTEL 608

>NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Silencing|
           mediator of retinoic acid and thyroid hormone receptor)
           (SMRT) (SMRTe) (Thyroid-,
           retinoic-acid-receptor-associated corepressor) (T3
           receptor-associating factor) (TRAC)
          Length = 2472

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 15/67 (22%), Positives = 35/67 (52%)
 Frame = +3

Query: 171 NEDWPEKDATVVHKNKVRKKKLSDLGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTS 350
           NE   E+ AT    +++   ++++  S+W+++E+E       ++G++W  +A  V  +T 
Sbjct: 584 NEANHEETATPQQSSELASMEMNE-SSRWTEEEMETAKKGLLEHGRNWSAIARMVGSKTV 642

Query: 351 DMVEALY 371
              +  Y
Sbjct: 643 SQCKNFY 649

>MYSM1_CHICK (Q5F3F2) Protein MYSM1 (Myb-like, SWIRM and MPN domain-containing|
           protein 1)
          Length = 832

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 252 QWSKDELEHFYGAYRKYGKDWRKVAGAVHDRT 347
           +W+ +E E F     KYG+ W K+A  +  RT
Sbjct: 121 KWTSEEKELFEQGLVKYGRRWTKIAKLIGSRT 152

>NIP80_YEAST (P33420) Protein NIP80 (Protein NIP100)|
          Length = 868

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 165 KINEDWPEKDATVVHKNKVRKKKLSDLGSQ 254
           K+ ED  E++  ++ +N V  KK+SDLG Q
Sbjct: 219 KVQEDLLEENTQLLEENAVLSKKISDLGLQ 248

>DAAM2_HUMAN (Q86T65) Disheveled-associated activator of morphogenesis 2|
          Length = 1068

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 441 SSSLST--LQP*QFPLEEINMPYSCCKEPPPYQMFYHGPHQPPSS 313
           SSS++T  L P   PL     P++CC  PPP  +   GP  PP +
Sbjct: 532 SSSMTTNDLPPPPPPL-----PFACCPPPPPPPLPPGGPPTPPGA 571

>RCOR3_HUMAN (Q9P2K3) REST corepressor 3|
          Length = 495

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +3

Query: 243 LGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTSDMVEALYNMNRAYLSLPE 404
           + ++W+ +E        RKYGKD++ +A  + ++T   V+  +   R   +L E
Sbjct: 286 INARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRFNLEE 339

>TRMD_CHLPN (Q9Z964) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)|
           (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
          Length = 361

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +1

Query: 211 KIKCERKNYPTLVLSGAKMSWSTSMELIENMEKIGGRWLVRSMIEHLIWWRLFTT*IGHI 390
           +++ E+KN  TL LS           L+   E  GG+ L +   EH + W L     GH 
Sbjct: 294 EVQAEKKNIVTLSLSLDCACEEDFCYLLRRWELFGGKLLEKQADEHAV-WALAQDLDGHA 352

Query: 391 YLF 399
           ++F
Sbjct: 353 WIF 355

>SYV_PYRAE (Q8ZVG2) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 799

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 19/83 (22%), Positives = 38/83 (45%)
 Frame = +3

Query: 156 RYAKINEDWPEKDATVVHKNKVRKKKLSDLGSQWSKDELEHFYGAYRKYGKDWRKVAGAV 335
           RY +IN    ++    +HK+K     L     ++  D +  +  A  + G D+R     +
Sbjct: 518 RYVRINGMGLDEKGEAMHKSKGNVIDLLAPVEKYGADPVRFWAAAAGRLGTDYRYNENVI 577

Query: 336 HDRTSDMVEALYNMNRAYLSLPE 404
            +   + +  ++N++R  LS PE
Sbjct: 578 RE-GKEFLTKVWNISRFVLSFPE 599

>NAS19_CAEEL (Q21181) Zinc metalloproteinase nas-19 precursor (EC 3.4.24.21)|
           (Nematode astacin 19)
          Length = 479

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 396 EINMPYSCCKEPPPYQMFYHGPHQPPSSNLF 304
           +I  P  CC + PPY+  +   H P    L+
Sbjct: 426 KITSPVVCCTDKPPYKNVFKSSHNPTIIELY 456

>EBNA6_EBV (P03204) Epstein-Barr nuclear antigen 6 (EBV nuclear antigen 6)|
           (EBNA-6) (EBNA-3C) (EBNA-4B)
          Length = 992

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 384 PYSCCKEPPPYQMFYHGPHQPPSSNL 307
           PY   +EPPP Q  Y G  +PP+  L
Sbjct: 759 PYQGYQEPPPPQAPYQGYQEPPAHGL 784

>MB3R1_ARATH (Q9S7G7) Myb-related protein 3R-1 (Plant c-MYB-like protein 1)|
           (Protein PC-MYB1) (PC-MYB1)
          Length = 776

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 252 QWSKDELEHFYGAYRKY-GKDWRKVAGAVHDRT 347
           QW+ +E E    A  ++ GK+W+K+A    DRT
Sbjct: 37  QWTPEEDEVLCKAVERFQGKNWKKIAECFKDRT 69

>NADB_PSEAE (Q51363) L-aspartate oxidase (EC 1.4.3.16) (LASPO) (Quinolinate|
           synthetase B)
          Length = 538

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -3

Query: 275 LQLIFAPLRTKVG*FFLSHFIFMYNRCILFWPIFINFGIALVNISHFSCG 126
           +  ++  +  K   F  +HF  +Y RC+ F        I +V  +H++CG
Sbjct: 306 IDCVYLDISHKPAEFIKAHFPTVYERCLDFGIDITQQPIPVVPAAHYTCG 355

>MIAA_DESPS (Q6ALW6) tRNA delta(2)-isopentenylpyrophosphate transferase (EC|
           2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA
           isopentenyltransferase) (IPTase) (IPPT)
          Length = 314

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 153 KRYAKINEDWPEKDATVVHKNKVRKKKLSDLGSQWSKDEL 272
           +RYAK    W  KD  +    K  K ++ D   QW +D+L
Sbjct: 271 RRYAKRQYTWFNKDEDLHWYQKESKAEIVDRVGQWLEDQL 310

>POLG_RHDV3 (P27411) Genome polyprotein (p254) [Contains: p16; p23; Helicase|
           (2C-like protein) (P2C); 3A-like protein; Viral
           genome-linked protein (VPg); Thiol protease P3C (EC
           3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48);
           Capsid protein VP60, sub
          Length = 2344

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
 Frame = +3

Query: 174 EDWPEKDATVVHK-NKVRKKKLSDLGSQWSKDELEHFYGAYRKYGKDWRKVAGAVHDRTS 350
           ++WP    T   K   + KK     G QW+K  +   YGA        RKV   +    S
Sbjct: 233 DNWPANPVTWYRKLGNITKK-----GKQWAKKVV---YGA--------RKVTDPLKTLAS 276

Query: 351 DMVEALYNMNRAYLSLPEGTATAAGLIAMMTDHYNILDGXY 473
            ++  L+N+     ++   T     L+A++ D  N L G +
Sbjct: 277 ILLVGLHNVIAVDTTVMLSTFNPVNLLAILMDWNNDLTGFF 317

>PACC_EMENI (Q00202) pH-response transcription factor pacC/RIM101|
          Length = 678

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 363 PPPYQMFYHGPHQPPSSNLFHIFYKLHRSAPTHLCSTENQGR 238
           PP Y   +H P QP + +  +++Y L+     H  S E++ R
Sbjct: 214 PPQYYQAHHAP-QPSNPSYGNVYYALNTGPEPHQASYESKKR 254


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,639,545
Number of Sequences: 219361
Number of extensions: 1274776
Number of successful extensions: 3992
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 3906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3989
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)