ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl04g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYT8_HUMAN (Q8NBV8) Synaptotagmin-8 (Synaptotagmin VIII) (SytVIII) 30 3.7
2SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (S... 30 4.9
3SCFD2_MOUSE (Q8BTY8) Sec1 family domain-containing protein 2 (Sy... 30 4.9
4MAST2_HUMAN (Q6P0Q8) Microtubule-associated serine/threonine-pro... 29 6.4
5NCAM2_MOUSE (O35136) Neural cell adhesion molecule 2 precursor (... 29 6.4
6SBE2_YEAST (P42223) Protein SBE2 29 8.3
7CU093_HUMAN (P59091) Protein C21orf93 29 8.3

>SYT8_HUMAN (Q8NBV8) Synaptotagmin-8 (Synaptotagmin VIII) (SytVIII)|
          Length = 172

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 196 PPASPLTHDPAASPGGVAGKVP*SSGDLGSETPWQRWIL 312
           PP SP    PA +   + G +P    DL + TPW RW L
Sbjct: 18  PPVSPSAPAPAGTTA-IPGLIP----DLVAGTPWPRWAL 51



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>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2) (Clk4-associating SR-related
           protein)
          Length = 653

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 22/56 (39%), Positives = 29/56 (51%)
 Frame = +1

Query: 193 SPPASPLTHDPAASPGGVAGKVP*SSGDLGSETPWQRWILSRPAKTPSARLEMRLQ 360
           SPP   LT  PAASP  V  K+  +    G ET       ++P  TP  RL++R+Q
Sbjct: 514 SPPREKLTR-PAASPA-VGEKLKKTEPAAGKETG-----AAKPKLTPQERLKLRMQ 562



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>SCFD2_MOUSE (Q8BTY8) Sec1 family domain-containing protein 2 (Syntaxin-binding|
           protein 1-like 1) (Neuronal Sec1)
          Length = 684

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 294 MAAVDLIASCQDSIRQIGDEIADALVYLDAGTLEAFHFIGAFPLLLELGARAVCSL 461
           M+A  ++A  Q    Q+  ++  ++VYLDA   E+ H+      LLE      C L
Sbjct: 1   MSAAGILAFAQQGWEQVLAKVKWSVVYLDAACAESLHWSCGSSRLLEAVKGPACHL 56



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>MAST2_HUMAN (Q6P0Q8) Microtubule-associated serine/threonine-protein kinase 2 (EC|
            2.7.11.1)
          Length = 1798

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
 Frame = -2

Query: 472  RRTSKLHTARAPSSRSRGNAPIKWNASRVPASRYTSASAISSPIWRMESWQDAIRSTAAM 293
            ++ S LHT+R+ SS +R    +    S   +  ++ + +  SP        DA+ S    
Sbjct: 1237 KQASLLHTSRSLSSLNRS---LSSGESGPGSPTHSHSLSPRSPTQGYRVTPDAVHSVGGN 1293

Query: 292  ASHSLGPQKITEPSPRRRLVMRPDRG*GAKPEGS*R-R*PRLENTETSPLPP 140
            +S S  P      SP      RP    G  P+   + R PR ++  + PL P
Sbjct: 1294 SSQSSSPSSSVPSSPAGSGHTRPSSLHGLAPKLQRQYRSPRRKSAGSIPLSP 1345



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>NCAM2_MOUSE (O35136) Neural cell adhesion molecule 2 precursor (N-CAM 2) (RB-8|
           neural cell adhesion molecule) (R4B12)
          Length = 837

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = -2

Query: 472 RRTSKLHTARAPSSRSRGNAPIKWNASRVPASRYTSASAISSPIWRMESWQDAIRSTAAM 293
           +R+  L    AP   S       W  + +  S   +A+  +S  WR E      ++T  +
Sbjct: 390 QRSMHLDIEYAPKFVSNQTMYYSWEGNPINISCDVTANPPASIHWRREKLLLPAKNTTHL 449

Query: 292 ASHSLGPQKITEPSP 248
            +HS+G + I E +P
Sbjct: 450 KTHSVGRKMILEIAP 464



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>SBE2_YEAST (P42223) Protein SBE2|
          Length = 864

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -2

Query: 466 TSKLHTARAP-SSRSRGNAPIKWNASRVPASRYTSASAISSPIWRMESWQDAIRSTAAMA 290
           TSKL   +   S+  + N P K++   +  S YT   + S P+ +  S   A  ST    
Sbjct: 13  TSKLDPLKEEDSTHLKQNQPKKFSTKELMLSEYTERKSCSLPLSKSRSGSSASSSTTGSN 72

Query: 289 SHSLGPQK 266
             ++G ++
Sbjct: 73  GKNIGTRR 80



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>CU093_HUMAN (P59091) Protein C21orf93|
          Length = 139

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = +1

Query: 199 PASPLTHDPAASPGGVAGKVP*SSGDLGSETPWQ 300
           PA    H PAA+ GGV  +V  SS  L  E PWQ
Sbjct: 18  PADAQLHGPAAAGGGVGPRVMLSS--LCREHPWQ 49


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,602,390
Number of Sequences: 219361
Number of extensions: 1348728
Number of successful extensions: 4727
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4724
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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