ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl04g05 |
|---|---|
| Clone Library Name | barley_pub |
>FMT_STRAW (Q827P7) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 310 Score = 30.8 bits (68), Expect = 0.83 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = +2 Query: 287 AHQPWDTGCLRLKFVLGGCVPSP--WEDFQSSR 379 AH W T LR+ V+ GC P+P W F+ R Sbjct: 210 AHVDWSTPALRVDRVVRGCTPAPGAWTVFRGER 242
>YJS1_YEAST (P46987) Hypothetical 69.5 kDa protein in SWE1-ATP12 intergenic| region Length = 611 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +1 Query: 43 SPPPRHTTCSVVRSRALPLPLRNGARAE 126 SPPP +T CS+ RS+ L +PL + R + Sbjct: 352 SPPPSNTGCSLHRSKPLHIPLSSVIRED 379
>YAP1_YEAST (P19880) AP-1-like transcription factor YAP1 (Phenanthroline| resistance protein PAR1) (Pleiotropic drug resistance protein PDR4) Length = 650 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/30 (53%), Positives = 20/30 (66%) Frame = -2 Query: 162 STATRMADPDSMLSPGSIAEGEGESSRSDD 73 STA R D ++SPGS+AE EG SR D+ Sbjct: 4 STAKRSLD---VVSPGSLAEFEGSKSRHDE 30
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 29.3 bits (64), Expect = 2.4 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 2/87 (2%) Frame = +2 Query: 119 GLSIESGSAIRVAVLPVGGPIPPQCLRDYAALVARHARVDLASLRPYYSEHQK--SPFAH 292 G S +A+ A P GPI PQ +L+ + + + P+++ Q SP +H Sbjct: 3575 GSPTASQNAMPQASTPKQGPITPQQAIRTQSLIMQPPTISIPEQTPHFAVPQMVLSPQSH 3634 Query: 293 QPWDTGCLRLKFVLGGCVPSPWEDFQS 373 P G +++G PSP S Sbjct: 3635 HPQQPG----TYMVGIRAPSPHSPLHS 3657
>VGLM_NYV (Q83887) Envelope polyprotein precursor [Contains: Glycoprotein 1| (G1); Glycoprotein 2 (G2)] Length = 1140 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/20 (65%), Positives = 14/20 (70%) Frame = -2 Query: 162 STATRMADPDSMLSPGSIAE 103 ST R ADPD + SPG IAE Sbjct: 330 STLVRKADPDYVFSPGIIAE 349
>ZEP2_MOUSE (Q3UHF7) Human immunodeficiency virus type I enhancer-binding| protein 2 homolog (Myc intron-binding protein 1) (MIBP-1) Length = 2430 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -2 Query: 126 LSPGSIAEGEGESSRSDDGAGRVSGRWRREQKCLRCQARF 7 + G A G+ +SRS + VSGRWR+EQ + + F Sbjct: 1 MDTGDTALGQKATSRSGE-TDSVSGRWRQEQSAVLKMSTF 39
>NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator| of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) Length = 2472 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +1 Query: 43 SPPPRHTTCSVVRSRALPLPLRNGARAEHRVRVGHPGGSA 162 SPP T RS A PL R+G + E R+ + PG ++ Sbjct: 2181 SPPEGMTEPGHARSTAYPLLYRDGEQGEPRMGLESPGNTS 2220
>NCAP_TACV (P18140) Nucleocapsid protein (Nucleoprotein)| Length = 570 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/51 (31%), Positives = 22/51 (43%) Frame = +2 Query: 152 VAVLPVGGPIPPQCLRDYAALVARHARVDLASLRPYYSEHQKSPFAHQPWD 304 + +LP I Q D L+ H R DL + ++ Q F HQ WD Sbjct: 447 IGLLPPNMVITTQGSDDIRKLLDIHGRKDLKLIDVKFTSDQARLFEHQVWD 497
>SPIT1_HUMAN (O43278) Kunitz-type protease inhibitor 1 precursor (Hepatocyte| growth factor activator inhibitor type 1) (HAI-1) Length = 529 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = -2 Query: 363 SSQGEGTQPPSTNLRRRQPVSQGWCAKGLFWCS 265 SS + T P ++ RR PV G C F CS Sbjct: 311 SSGAQATFPQGPSMERRHPVCSGTCQPTQFRCS 343
>FAT2_YEAST (P38137) Peroxisomal-coenzyme A synthetase (EC 6.-.-.-)| Length = 543 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -2 Query: 186 GGIGPPTGSTATRMADPDSMLSPGSIAE 103 G +G P G T + D D++L PG + E Sbjct: 356 GTVGQPQGVTVVILDDNDNVLPPGKVGE 383
>IKBL_RAT (Q8R2H1) NF-kappa-B inhibitor-like protein 1 (Inhibitor of kappa| B-like) (I-kappa-B-like) (IkappaBL) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1) Length = 381 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/40 (42%), Positives = 20/40 (50%) Frame = +1 Query: 46 PPPRHTTCSVVRSRALPLPLRNGARAEHRVRVGHPGGSAA 165 PPP H C+ + AL L LR GA H+ R G AA Sbjct: 66 PPPLHRACARHDAPALCLLLRLGADPAHQDRHGDTALHAA 105
>IKBL_MOUSE (O88995) NF-kappa-B inhibitor-like protein 1 (Inhibitor of kappa| B-like) (I-kappa-B-like) (IkappaBL) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1) Length = 381 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/40 (42%), Positives = 20/40 (50%) Frame = +1 Query: 46 PPPRHTTCSVVRSRALPLPLRNGARAEHRVRVGHPGGSAA 165 PPP H C+ + AL L LR GA H+ R G AA Sbjct: 67 PPPLHRACARHDAPALCLLLRLGADPAHQDRHGDTALHAA 106
>IKBL_MACMU (Q5TM19) NF-kappa-B inhibitor-like protein 1 (Inhibitor of kappa| B-like) (I-kappa-B-like) (IkappaBL) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1) Length = 381 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/40 (42%), Positives = 20/40 (50%) Frame = +1 Query: 46 PPPRHTTCSVVRSRALPLPLRNGARAEHRVRVGHPGGSAA 165 PPP H C+ + AL L LR GA H+ R G AA Sbjct: 66 PPPLHRACARHDAPALCLLLRLGADPAHQDRHGDTALHAA 105
>IKBL_HUMAN (Q9UBC1) NF-kappa-B inhibitor-like protein 1 (Inhibitor of kappa| B-like) (I-kappa-B-like) (IkappaBL) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1) Length = 381 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/40 (42%), Positives = 20/40 (50%) Frame = +1 Query: 46 PPPRHTTCSVVRSRALPLPLRNGARAEHRVRVGHPGGSAA 165 PPP H C+ + AL L LR GA H+ R G AA Sbjct: 66 PPPLHRACARHDAPALCLLLRLGADPAHQDRHGDTALHAA 105
>HEM3_BURPS (Q63W73) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 329 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +2 Query: 113 EPGLSIESGSAIRVAVLPVGGPIPPQCLRDYAALVARHARVDLASLR 253 +P + S + LP G + LR A L ARH R+D+ LR Sbjct: 111 DPRDAFVSNDYASLDALPAGAVVGTSSLRREAMLRARHPRLDVRPLR 157
>HEM3_BURMA (Q62LC0) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 329 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +2 Query: 113 EPGLSIESGSAIRVAVLPVGGPIPPQCLRDYAALVARHARVDLASLR 253 +P + S + LP G + LR A L ARH R+D+ LR Sbjct: 111 DPRDAFVSNDYASLDALPAGAVVGTSSLRREAMLRARHPRLDVRPLR 157
>FTSK_STRR6 (P64167) DNA translocase ftsK| Length = 767 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -2 Query: 144 ADPDSMLSPGSIAEGEGESSRSDDG 70 AD D PG ++E EGE S D G Sbjct: 682 ADYDESFDPGEVSENEGEFSDGDAG 706
>FTSK_STRPN (P64166) DNA translocase ftsK| Length = 767 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -2 Query: 144 ADPDSMLSPGSIAEGEGESSRSDDG 70 AD D PG ++E EGE S D G Sbjct: 682 ADYDESFDPGEVSENEGEFSDGDAG 706
>IKBL_PIG (Q9TSV7) NF-kappa-B inhibitor-like protein 1 (Inhibitor of kappa| B-like) (I-kappa-B-like) (IkappaBL) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1) Length = 380 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/40 (42%), Positives = 20/40 (50%) Frame = +1 Query: 46 PPPRHTTCSVVRSRALPLPLRNGARAEHRVRVGHPGGSAA 165 PPP H C+ + AL L LR GA H+ R G AA Sbjct: 66 PPPLHRACARHDAPALCLLLRLGADPAHQDRHGDTALHAA 105
>IKBL_PANTR (Q861W0) NF-kappa-B inhibitor-like protein 1 (Inhibitor of kappa| B-like) (I-kappa-B-like) (IkappaBL) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1) Length = 380 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/40 (42%), Positives = 20/40 (50%) Frame = +1 Query: 46 PPPRHTTCSVVRSRALPLPLRNGARAEHRVRVGHPGGSAA 165 PPP H C+ + AL L LR GA H+ R G AA Sbjct: 66 PPPLHRACARHDAPALCLLLRLGADPAHQDRHGDTALHAA 105
>NFAC4_HUMAN (Q14934) Nuclear factor of activated T-cells, cytoplasmic 4| (NF-ATc4) (NFATc4) (T cell transcription factor NFAT3) (NF-AT3) Length = 902 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/43 (34%), Positives = 18/43 (41%) Frame = +1 Query: 40 PSPPPRHTTCSVVRSRALPLPLRNGARAEHRVRVGHPGGSAAG 168 P PPP R P P ++ VR+G PGG A G Sbjct: 62 PRPPPPRPGMHSPPPRPAPSPGTWESQPARSVRLGGPGGGAGG 104
>ZEP2_RAT (Q00900) Human immunodeficiency virus type I enhancer-binding| protein 2 homolog (DNA-binding protein AGIE-BP1) (Angiotensinogen gene-inducible enhancer-binding protein 1) (Myc intron-binding protein 1) Length = 2437 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = -2 Query: 126 LSPGSIAEGEGESSRSDDGAGRVSGRWRREQ 34 + G A G+ +SRS + VSGRWR+EQ Sbjct: 1 MDTGDTALGQKATSRSGE-TDSVSGRWRQEQ 30
>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1)| (Protein kinase with no lysine 2) (Protein kinase, lysine-deficient 2) Length = 2297 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = +1 Query: 40 PSPPPRHTTCSVVR-SRALPLPLRNGARAEHRVRVGHPGGS 159 P PPP++ + +V+ S A PLP + A V++ HP G+ Sbjct: 827 PVPPPQYFSPAVILPSLAAPLPPASPALPLQAVKLPHPPGA 867
>WIRE_MOUSE (Q6PEV3) WIP-related protein (WASP-interacting protein-related| protein) Length = 440 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +1 Query: 40 PSPPPRHTTCSVVRSRALPLPLRNGARAEHRVRVGHP 150 P+P P H+ + +R PLP G R H R GHP Sbjct: 190 PTPLPLHSNKAQAYNREKPLPPTPGQRL-HPGREGHP 225
>XRCC3_MOUSE (Q9CXE6) DNA-repair protein XRCC3 (X-ray repair cross-complementing| protein 3) Length = 349 Score = 27.3 bits (59), Expect = 9.1 Identities = 20/54 (37%), Positives = 28/54 (51%) Frame = +2 Query: 188 QCLRDYAALVARHARVDLASLRPYYSEHQKSPFAHQPWDTGCLRLKFVLGGCVP 349 QCL A+L R +RV L++L + + + P HQ GC L LGG +P Sbjct: 47 QCLLRAASLHLRGSRV-LSALH-LFQQKESFPEQHQRLSLGCPVLDQFLGGGLP 98
>LBP_HUMAN (P18428) Lipopolysaccharide-binding protein precursor (LBP)| Length = 481 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = -2 Query: 102 GEGESSRSDDGAGRVSGRWRREQKCLRCQARFD 4 G+G S D + RV GRW+ + + Q FD Sbjct: 98 GQGLSLSISDSSIRVQGRWKVRKSFFKLQGSFD 130
>ZEP2_HUMAN (P31629) Human immunodeficiency virus type I enhancer-binding| protein 2 (HIV-EP2) (MHC-binding protein 2) (MBP-2) Length = 2446 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = -2 Query: 126 LSPGSIAEGEGESSRSDDGAGRVSGRWRREQKCL 25 + G A G+ +SRS + + SGRWR+EQ + Sbjct: 1 MDTGDTALGQKATSRSGE-TDKASGRWRQEQSAV 33
>YS25_CAEEL (Q09366) Hypothetical protein ZK1320.5| Length = 414 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%) Frame = -2 Query: 186 GGIGPPTGSTATRMA----DPDSMLSPGSIAEGEGESSRSDDGAGRVSG 52 GG G P + RMA DP+S+ S GS+A + S + G+G SG Sbjct: 351 GGGGAPRPPSGGRMASISKDPNSITSSGSLA----KQSTASMGSGGASG 395
>AXN2_BRARE (P57095) Axin-2 (Axis inhibition protein 2)| Length = 812 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/23 (43%), Positives = 18/23 (78%) Frame = +1 Query: 55 RHTTCSVVRSRALPLPLRNGARA 123 RH+T S+ R ++ P+P++NG+ A Sbjct: 688 RHSTSSLQRDKSHPVPVQNGSSA 710
>AGP1_YEAST (P25376) General amino acid permease AGP1 (Asparagine/glutamine| permease) Length = 595 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = -2 Query: 177 GPPTGSTATRMADPDSMLSPGSIAEGEGESSRSDDGAGRVSG 52 GP AT+M D S +SP S E E + S D G +G Sbjct: 69 GPQDEVEATQMNDLTSAISPSSRQAQELEKNESSDNIGANTG 110
>RNC_RHOS4 (Q3J5W1) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 229 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/60 (26%), Positives = 25/60 (41%) Frame = -2 Query: 183 GIGPPTGSTATRMADPDSMLSPGSIAEGEGESSRSDDGAGRVSGRWRREQKCLRCQARFD 4 G+ PPT R + + + G GE+ R+ G RV+ + R +AR D Sbjct: 170 GLPPPTYEAVDRSGPDHAPIFTVEVRLGNGETDRAAAGTKRVAEQAAARALLARMEARHD 229 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,027,156 Number of Sequences: 219361 Number of extensions: 806249 Number of successful extensions: 3439 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3231 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3438 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
