>NOTC4_MOUSE (P31695) Neurogenic locus notch homolog protein 4 precursor (Notch 4)|
            [Contains: Transforming protein Int-3; Notch 4
            extracellular truncation; Notch 4 intracellular domain]
          Length = 1964

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 311  PDPPPVRLGQPGAHGLARRGCPPPRHA-CQGPGQELAGRGCSRAQAVQLPEPCWR 472
            PD P  R  +PGA G   RG      A C GPG +  G  CS    + +P+P W+
Sbjct: 1159 PDSPGPRCQRPGASGCEGRGGDGTCDAGCSGPGGDWDGGDCS----LGVPDP-WK 1208

>ATIN_BHV1P (P30020) Alpha trans-inducing protein (Alpha-TIF)|
          Length = 504

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 311 PDPPPVRLGQPGAHGLAR-RGCPPPRHACQGPGQELAGR 424
           P P PVR G     GL+R RG P P  AC GP +   GR
Sbjct: 443 PGPSPVRSGL----GLSRARGSPGPGPACGGPSRARGGR 477

>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5|
          Length = 388

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 12/44 (27%)
 Frame = +2

Query: 311 PDPPPVRLGQPGAHGL------------ARRGCPPPRHACQGPG 406
           P PPP R G PG  G+                 PPPR+   GPG
Sbjct: 318 PPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPG 361

>FOXE3_HUMAN (Q13461) Forkhead box protein E3 (Forkhead-related protein FKHL12)|
           (Forkhead-related transcription factor 8) (FREAC-8)
          Length = 319

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = +2

Query: 314 DPPPVRLGQPGAHGLARRGCPPPRHACQGPGQELAGRGCSRAQAVQLPEP 463
           DPP    G P    +A  G PP   A   PG+E       R +A   P P
Sbjct: 8   DPPAAFSGFPALPAVAPSGPPPSPLAGAEPGREPEEAAAGRGEAAPTPAP 57

>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 135 kDa subunit)
           (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130)
           (TAFII130)
          Length = 1085

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 311 PDPPPVRLGQPGAHGLARRGCPPPR 385
           P+PPP    +PG  G  R G P PR
Sbjct: 87  PEPPPAGRARPGGGGPQRPGPPSPR 111

>SAM68_CHICK (Q8UUW7) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (Src-associated in
           mitosis 68 kDa protein) (Sam68)
          Length = 433

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 314 DPPPVRLGQ-PGAHGLARRGCPPPRHACQGPGQELAGRGCSRAQAVQLPEP 463
           D    R+G+ PG  G AR+G P PR + +G G    GRG       Q P+P
Sbjct: 5   DDSSARMGRGPGGPGSARQGGPNPRRSPRGGG----GRGA----GAQHPQP 47

>WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 501

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 20/56 (35%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
 Frame = +2

Query: 311 PDPPPVRLGQPGAHGLARRGCPPPRHACQGPGQELAGRGC-----SRAQAVQLPEP 463
           P PPP R G P          PPP H+   P     GRG      SRA     P P
Sbjct: 275 PPPPPSRGGPPPP--------PPPPHSSGPPPPPARGRGAPPPPPSRAPTAAPPPP 322

>WASL_MOUSE (Q91YD9) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 501

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 20/56 (35%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
 Frame = +2

Query: 311 PDPPPVRLGQPGAHGLARRGCPPPRHACQGPGQELAGRGC-----SRAQAVQLPEP 463
           P PPP R G P          PPP H+   P     GRG      SRA     P P
Sbjct: 275 PPPPPSRGGPPPP--------PPPPHSSGPPPPPARGRGAPPPPPSRAPTAAPPPP 322

>WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 505

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 20/56 (35%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
 Frame = +2

Query: 311 PDPPPVRLGQPGAHGLARRGCPPPRHACQGPGQELAGRGC-----SRAQAVQLPEP 463
           P PPP R G P          PPP H+   P     GRG      SRA     P P
Sbjct: 278 PPPPPSRGGPPPP--------PPPPHSSGPPPPPARGRGAPPPPPSRAPTAAPPPP 325

>GFRA4_HUMAN (Q9GZZ7) GDNF family receptor alpha-4 precursor (GFR-alpha-4)|
           (Persephin receptor)
          Length = 299

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +2

Query: 317 PPPVRLGQPGAHGLARRGCPPPRHACQGPGQELAGR 424
           PP  +   PG  GL       PR    GPG+ L  R
Sbjct: 153 PPAAQASPPGLSGLVHPSAQRPRRLPAGPGRPLPAR 188

>CSUP_DROME (Q9V3A4) Protein catecholamines up|
          Length = 449

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 458 LEVGRLGHGSNHGRRAPDPVPGRR 387
           L+ G  GHG +HG   P PVP ++
Sbjct: 245 LKGGHGGHGHSHGAPKPKPVPAKK 268


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.133    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,819,203
Number of Sequences: 219361
Number of extensions: 510734
Number of successful extensions: 2195
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2168
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)