>NOMO3_HUMAN (P69849) Nodal modulator 3 precursor (pM5 protein 3)|
          Length = 1222

 Score = 87.8 bits (216), Expect = 1e-17
 Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
 Frame = +2

Query: 113 DEIDGCGGFVEASSGLAKSRRASESKFDYSDITVELCTVDGLVKESTQCAPN-GYYFIPV 289
           D + GCGGFV+           S+ + +YS I ++L T  G +K  T CAPN GY+ IP+
Sbjct: 34  DIVVGCGGFVK-----------SDVEINYSLIEIKLYTKHGTLKYQTDCAPNNGYFMIPL 82

Query: 290 YDKVYLWMIFSGSFVVRVKGPKGWSWKPETVPAVID--QNGCNGNADINFQFTGFTVSGK 463
           YDK        G F+++++ P GWS++P TV   +D   + C    DINF FTGF+V+GK
Sbjct: 83  YDK--------GDFILKIEPPLGWSFEPTTVELHVDGVSDICTKGGDINFVFTGFSVNGK 134

>NOMO1_HUMAN (Q15155) Nodal modulator 1 precursor (pM5)|
          Length = 1222

 Score = 87.8 bits (216), Expect = 1e-17
 Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
 Frame = +2

Query: 113 DEIDGCGGFVEASSGLAKSRRASESKFDYSDITVELCTVDGLVKESTQCAPN-GYYFIPV 289
           D + GCGGFV+           S+ + +YS I ++L T  G +K  T CAPN GY+ IP+
Sbjct: 34  DIVVGCGGFVK-----------SDVEINYSLIEIKLYTKHGTLKYQTDCAPNNGYFMIPL 82

Query: 290 YDKVYLWMIFSGSFVVRVKGPKGWSWKPETVPAVID--QNGCNGNADINFQFTGFTVSGK 463
           YDK        G F+++++ P GWS++P TV   +D   + C    DINF FTGF+V+GK
Sbjct: 83  YDK--------GDFILKIEPPLGWSFEPTTVELHVDGVSDICTKGGDINFVFTGFSVNGK 134

>NOMO2_HUMAN (Q5JPE7) Nodal modulator 2 precursor (pM5 protein 2)|
          Length = 1267

 Score = 87.8 bits (216), Expect = 1e-17
 Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
 Frame = +2

Query: 113 DEIDGCGGFVEASSGLAKSRRASESKFDYSDITVELCTVDGLVKESTQCAPN-GYYFIPV 289
           D + GCGGFV+           S+ + +YS I ++L T  G +K  T CAPN GY+ IP+
Sbjct: 34  DIVVGCGGFVK-----------SDVEINYSLIEIKLYTKHGTLKYQTDCAPNNGYFMIPL 82

Query: 290 YDKVYLWMIFSGSFVVRVKGPKGWSWKPETVPAVID--QNGCNGNADINFQFTGFTVSGK 463
           YDK        G F+++++ P GWS++P TV   +D   + C    DINF FTGF+V+GK
Sbjct: 83  YDK--------GDFILKIEPPLGWSFEPTTVELHVDGVSDICTKGGDINFVFTGFSVNGK 134

>VL1_PAPVE (P11326) Major capsid protein L1|
          Length = 501

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +2

Query: 131 GGFVEASSGLAKSRRASESKFDYS-DITVELCTVDGLVKESTQCAPNGYYFIPVYDKVYL 307
           G  ++   G A  +  + +K D   DI  ++C     +K + + A N  +F    ++VY+
Sbjct: 196 GDMMDIGFGAANFKELNATKSDLPLDIAKDICLYPDYLKMTEEAAGNSMFFFARKEQVYV 255

Query: 308 WMIFSGSFVVRVKGPKGWSWKPE 376
             I+S     +   P+ +  KP+
Sbjct: 256 RHIWSRGGTDKEMPPEAYFLKPK 278

>VL1_BPV1 (P03103) Major capsid protein L1|
          Length = 495

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +2

Query: 131 GGFVEASSGLAKSRRASESKFDYS-DITVELCTVDGLVKESTQCAPNGYYFIPVYDKVYL 307
           G  +E   G A  +  + SK D   DI  E+C     +K +   A N  +F    ++VY+
Sbjct: 194 GDMMEIGFGAANFKEINASKSDLPLDIQNEICLYPDYLKMAEDAAGNSMFFFARKEQVYV 253

Query: 308 WMIFS 322
             I++
Sbjct: 254 RHIWT 258

>RHO_TREPA (O83281) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 519

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = -2

Query: 322 TEDHPQVYLVI-----DWNEIVAIRSTLGAFFHQTVDSTQLNRYVRVVELGL*RPPRFGQ 158
           T++HP+VYL++        E+  +  T+ A    +    Q  R+V++ E+ L R  R  +
Sbjct: 292 TQNHPEVYLIVLLIDERPEEVTDMERTVDAEVISSTFDEQATRHVQIAEIVLERAKRLVE 351

Query: 157 AR 152
            R
Sbjct: 352 HR 353


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,176,467
Number of Sequences: 219361
Number of extensions: 976337
Number of successful extensions: 2290
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2278
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)