>GLGB_ORYSA (Q01401) 1,4-alpha-glucan branching enzyme, chloroplast precursor|
           (EC 2.4.1.18) (Starch branching enzyme) (Q-enzyme)
          Length = 820

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
 Frame = +1

Query: 7   CLRSSAQSLTKPLLPATMRRPPRLVVGG--------ASSPSLAW 114
           CL SS+ S   PLLP+   RP   + GG         SSP  +W
Sbjct: 3   CLTSSSSSAPAPLLPSLADRPSPGIAGGGGNVRLSVVSSPRRSW 46

>TGIF_PANTR (Q5IS58) 5'-TG-3'-interacting factor (Homeobox protein TGIF)|
          Length = 401

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 111 CERGRGGSSDYEPWWAAHGGGEE 43
           C    GG SDY PW A+H G  +
Sbjct: 17  CSGSGGGGSDYFPWPASHPGNPQ 39

>SHAN2_HUMAN (Q9UPX8) SH3 and multiple ankyrin repeat domains protein 2 (Shank2)|
          Length = 1253

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 19  SAQSLTKPLLPATMRRPPRLVVGG--ASSPSLAWRSLCTT 132
           SA+ L+ P+  AT R P    VGG  AS+P  A R L +T
Sbjct: 541 SAEQLSSPMPSATPREPENHFVGGAEASAPGEAGRPLNST 580

>UBID_ECOLI (P0AAB4) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)|
           (Polyprenyl p-hydroxybenzoate decarboxylase)
          Length = 497

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -3

Query: 99  RGGSSDYEPWWAAHGGGEERF 37
           RGG+ DY+ W AAH G  ERF
Sbjct: 197 RGGALDYQEWCAAHPG--ERF 215

>UBID_ECOL6 (P0AAB5) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)|
           (Polyprenyl p-hydroxybenzoate decarboxylase)
          Length = 497

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -3

Query: 99  RGGSSDYEPWWAAHGGGEERF 37
           RGG+ DY+ W AAH G  ERF
Sbjct: 197 RGGALDYQEWCAAHPG--ERF 215

>UBID_ECO57 (P58194) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)|
           (Polyprenyl p-hydroxybenzoate decarboxylase)
          Length = 497

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -3

Query: 99  RGGSSDYEPWWAAHGGGEERF 37
           RGG+ DY+ W AAH G  ERF
Sbjct: 197 RGGALDYQEWCAAHPG--ERF 215


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.125    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,767,307
Number of Sequences: 219361
Number of extensions: 361060
Number of successful extensions: 1155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)