ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl04f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479008.1| Oryza sativa (japonica cultivar-group), mRNA 103 4e-19
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 103 4e-19
3dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic D... 103 4e-19
4dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic D... 103 4e-19
5dbj|AK119897.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 4e-19
6dbj|AK120815.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
7ref|XM_473095.1| Oryza sativa (japonica cultivar-group), predic... 46 0.090
8emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4,... 46 0.090
9emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4,... 46 0.090
10dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.090
11gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 44 0.35
12gb|AY895166.1| Gallus gallus BAC bW108010 chemokine-like ligand ... 44 0.35
13gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome 42 1.4
14gb|AC010906.10| Homo sapiens BAC clone RP11-566O4 from 2, comple... 42 1.4
15dbj|D89070.1| Rattus norvegicus DNA for non-inducible carbony re... 42 1.4
16gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 5.5
17ref|XM_471280.1| Oryza sativa (japonica cultivar-group), predic... 40 5.5
18gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence 40 5.5
19gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 5.5
20gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 5.5
21ref|XM_458807.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 5.5
22gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 5.5
23gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 5.5
24gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 5.5
25gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 5.5
26ref|XM_855784.1| PREDICTED: Canis familiaris similar to Numb-int... 40 5.5
27ref|XM_544660.2| PREDICTED: Canis familiaris similar to Numb-int... 40 5.5
28gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 5.5
29emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS... 40 5.5
30emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.5
31emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.5
32emb|AL662989.3|OSJN00190 Oryza sativa genomic DNA, chromosome 4,... 40 5.5
33gb|AY996915.1| Burkholderia vietnamiensis strain MDIIIAzo30 GyrB... 40 5.5
34gb|AY996914.1| Burkholderia vietnamiensis strain Na30 GyrB (gyrB... 40 5.5
35gb|AY996913.1| Burkholderia vietnamiensis strain TVV75 GyrB (gyr... 40 5.5
36gb|AY987924.1| Burkholderia dolosa strain LMG 18942 GyrB (gyrB) ... 40 5.5
37gb|AY987923.1| Burkholderia dolosa strain LMG 18941 GyrB (gyrB) ... 40 5.5
38emb|AJ867398.1| Triticum aestivum mRNA for glycosyltransferase (... 40 5.5
39gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.5
40gb|AE005831.1| Caulobacter crescentus CB15 section 157 of 359 of... 40 5.5
41gb|AE006016.1| Caulobacter crescentus CB15 section 342 of 359 of... 40 5.5
42gb|AF145236.1|AF145236 Methanobacterium thermoautotrophicum stra... 40 5.5
43gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 5.5
44gb|AC156835.2| Mus musculus BAC clone RP23-322L4 from chromosome... 40 5.5
45gb|AE004887.1| Pseudomonas aeruginosa PAO1, section 448 of 529 o... 40 5.5
46dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.5
47emb|X17205.1|PPPMEC Methanobacterium thermoautotrophicum plasmid... 40 5.5
48emb|AJ420777.1|BCE420777 Burkholderia cepacia waaA gene for Kdo ... 40 5.5
49gb|U86302.1|CCU86302 Caulobacter crescentus topoisomerase IV Par... 40 5.5
50gb|AC154511.2| Mus musculus BAC clone RP24-69N19 from 13, comple... 40 5.5
51gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence 40 5.5
52gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 5.5
53gb|AC123620.14| Mus musculus chromosome 12, clone RP23-53J21, co... 40 5.5
54gb|U94696.1|CCU94696 Caulobacter crescentus DNA topoisomerase IV... 40 5.5
55gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 5.5
56emb|AL672290.16| Mouse DNA sequence from clone RP23-471M13 on ch... 40 5.5 
>ref|XM_479008.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3330

 Score =  103 bits (52), Expect = 4e-19
 Identities = 130/156 (83%)
 Strand = Plus / Plus

                                                                       
Query: 255 ggtggcaggagtcggacccgtcgccgtgcgggtggaagggcgtgacctgcgacgggggcg 314
           |||||| |||||| ||| ||||||||||| |||||   |||||||||||||||||| |||
Sbjct: 149 ggtggccggagtccgacgcgtcgccgtgccggtgggccggcgtgacctgcgacgggcgcg 208

                                                                       
Query: 315 gccgcgtctcgtcgctcaacctgacgcgctcgaccatctccggcccggtgttcggcggct 374
           |||||||| || ||||| ||||  |  ||||| |||||  |||| | | |||||||  ||
Sbjct: 209 gccgcgtcacggcgctcgacctctccggctcggccatcagcggcgccgcgttcggcaact 268

                                               
Query: 375 tctcgcggctcccggcgctcacgtcgctcgacctct 410
           |||| |||||| |||||||||||| |||||||||||
Sbjct: 269 tctcccggctcacggcgctcacgtggctcgacctct 304
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  103 bits (52), Expect = 4e-19
 Identities = 130/156 (83%)
 Strand = Plus / Minus

                                                                            
Query: 255      ggtggcaggagtcggacccgtcgccgtgcgggtggaagggcgtgacctgcgacgggggcg 314
                |||||| |||||| ||| ||||||||||| |||||   |||||||||||||||||| |||
Sbjct: 24297824 ggtggccggagtccgacgcgtcgccgtgccggtgggccggcgtgacctgcgacgggcgcg 24297765

                                                                            
Query: 315      gccgcgtctcgtcgctcaacctgacgcgctcgaccatctccggcccggtgttcggcggct 374
                |||||||| || ||||| ||||  |  ||||| |||||  |||| | | |||||||  ||
Sbjct: 24297764 gccgcgtcacggcgctcgacctctccggctcggccatcagcggcgccgcgttcggcaact 24297705

                                                    
Query: 375      tctcgcggctcccggcgctcacgtcgctcgacctct 410
                |||| |||||| |||||||||||| |||||||||||
Sbjct: 24297704 tctcccggctcacggcgctcacgtggctcgacctct 24297669



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                            
Query: 59       ttcttccatgattcacgagggcaggccatgtctcccctgctcctccagtccctctgcata 118
                |||||||||||||| ||| |||  ||||||||||||||||| ||    | ||||||| ||
Sbjct: 24298083 ttcttccatgattctcgaaggcgtgccatgtctcccctgcttcttggattcctctgctta 24298024

                               
Query: 119      ctcctcctcgcaggt 133
                |||||| ||||||||
Sbjct: 24298023 ctcctcttcgcaggt 24298009
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>dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1579_C03
          Length = 122851

 Score =  103 bits (52), Expect = 4e-19
 Identities = 130/156 (83%)
 Strand = Plus / Minus

                                                                         
Query: 255   ggtggcaggagtcggacccgtcgccgtgcgggtggaagggcgtgacctgcgacgggggcg 314
             |||||| |||||| ||| ||||||||||| |||||   |||||||||||||||||| |||
Sbjct: 31017 ggtggccggagtccgacgcgtcgccgtgccggtgggccggcgtgacctgcgacgggcgcg 30958

                                                                         
Query: 315   gccgcgtctcgtcgctcaacctgacgcgctcgaccatctccggcccggtgttcggcggct 374
             |||||||| || ||||| ||||  |  ||||| |||||  |||| | | |||||||  ||
Sbjct: 30957 gccgcgtcacggcgctcgacctctccggctcggccatcagcggcgccgcgttcggcaact 30898

                                                 
Query: 375   tctcgcggctcccggcgctcacgtcgctcgacctct 410
             |||| |||||| |||||||||||| |||||||||||
Sbjct: 30897 tctcccggctcacggcgctcacgtggctcgacctct 30862



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                         
Query: 59    ttcttccatgattcacgagggcaggccatgtctcccctgctcctccagtccctctgcata 118
             |||||||||||||| ||| |||  ||||||||||||||||| ||    | ||||||| ||
Sbjct: 31276 ttcttccatgattctcgaaggcgtgccatgtctcccctgcttcttggattcctctgctta 31217

                            
Query: 119   ctcctcctcgcaggt 133
             |||||| ||||||||
Sbjct: 31216 ctcctcttcgcaggt 31202
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>dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0453E05
          Length = 137364

 Score =  103 bits (52), Expect = 4e-19
 Identities = 130/156 (83%)
 Strand = Plus / Minus

                                                                          
Query: 255    ggtggcaggagtcggacccgtcgccgtgcgggtggaagggcgtgacctgcgacgggggcg 314
              |||||| |||||| ||| ||||||||||| |||||   |||||||||||||||||| |||
Sbjct: 109375 ggtggccggagtccgacgcgtcgccgtgccggtgggccggcgtgacctgcgacgggcgcg 109316

                                                                          
Query: 315    gccgcgtctcgtcgctcaacctgacgcgctcgaccatctccggcccggtgttcggcggct 374
              |||||||| || ||||| ||||  |  ||||| |||||  |||| | | |||||||  ||
Sbjct: 109315 gccgcgtcacggcgctcgacctctccggctcggccatcagcggcgccgcgttcggcaact 109256

                                                  
Query: 375    tctcgcggctcccggcgctcacgtcgctcgacctct 410
              |||| |||||| |||||||||||| |||||||||||
Sbjct: 109255 tctcccggctcacggcgctcacgtggctcgacctct 109220



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                          
Query: 59     ttcttccatgattcacgagggcaggccatgtctcccctgctcctccagtccctctgcata 118
              |||||||||||||| ||| |||  ||||||||||||||||| ||    | ||||||| ||
Sbjct: 109634 ttcttccatgattctcgaaggcgtgccatgtctcccctgcttcttggattcctctgctta 109575

                             
Query: 119    ctcctcctcgcaggt 133
              |||||| ||||||||
Sbjct: 109574 ctcctcttcgcaggt 109560
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>dbj|AK119897.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-180-C07, full
           insert sequence
          Length = 3732

 Score =  103 bits (52), Expect = 4e-19
 Identities = 130/156 (83%)
 Strand = Plus / Plus

                                                                       
Query: 255 ggtggcaggagtcggacccgtcgccgtgcgggtggaagggcgtgacctgcgacgggggcg 314
           |||||| |||||| ||| ||||||||||| |||||   |||||||||||||||||| |||
Sbjct: 309 ggtggccggagtccgacgcgtcgccgtgccggtgggccggcgtgacctgcgacgggcgcg 368

                                                                       
Query: 315 gccgcgtctcgtcgctcaacctgacgcgctcgaccatctccggcccggtgttcggcggct 374
           |||||||| || ||||| ||||  |  ||||| |||||  |||| | | |||||||  ||
Sbjct: 369 gccgcgtcacggcgctcgacctctccggctcggccatcagcggcgccgcgttcggcaact 428

                                               
Query: 375 tctcgcggctcccggcgctcacgtcgctcgacctct 410
           |||| |||||| |||||||||||| |||||||||||
Sbjct: 429 tctcccggctcacggcgctcacgtggctcgacctct 464



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 69/82 (84%)
 Strand = Plus / Plus

                                                                       
Query: 59  ttcttccatgattcacgagggcaggccatgtctcccctgctcctccagtccctctgcata 118
           |||||||||||||| ||| |||  ||||||||||||||||| ||    | ||||||| ||
Sbjct: 134 ttcttccatgattctcgaaggcgtgccatgtctcccctgcttcttggattcctctgctta 193

                                 
Query: 119 ctcctcctcgcaggtgaggtgg 140
           |||||| |||||||| ||||||
Sbjct: 194 ctcctcttcgcaggtcaggtgg 215
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>dbj|AK120815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014N07, full
           insert sequence
          Length = 3856

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 129/156 (82%)
 Strand = Plus / Plus

                                                                       
Query: 255 ggtggcaggagtcggacccgtcgccgtgcgggtggaagggcgtgacctgcgacgggggcg 314
           |||||| |||||| ||| ||||||||||| |||||   |||||||||||||||||| |||
Sbjct: 350 ggtggccggagtccgacgcgtcgccgtgccggtgggccggcgtgacctgcgacgggcgcg 409

                                                                       
Query: 315 gccgcgtctcgtcgctcaacctgacgcgctcgaccatctccggcccggtgttcggcggct 374
           |||||||| || ||||| |||   |  ||||| |||||  |||| | | |||||||  ||
Sbjct: 410 gccgcgtcacggcgctcgacccctccggctcggccatcagcggcgccgcgttcggcaact 469

                                               
Query: 375 tctcgcggctcccggcgctcacgtcgctcgacctct 410
           |||| |||||| |||||||||||| |||||||||||
Sbjct: 470 tctcccggctcacggcgctcacgtggctcgacctct 505



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 69/82 (84%)
 Strand = Plus / Plus

                                                                       
Query: 59  ttcttccatgattcacgagggcaggccatgtctcccctgctcctccagtccctctgcata 118
           |||||||||||||| ||| |||  ||||||||||||||||| ||    | ||||||| ||
Sbjct: 175 ttcttccatgattctcgaaggcgtgccatgtctcccctgcttcttggattcctctgctta 234

                                 
Query: 119 ctcctcctcgcaggtgaggtgg 140
           |||||| |||||||| ||||||
Sbjct: 235 ctcctcttcgcaggtcaggtgg 256
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>ref|XM_473095.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3315

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 275 tcgccgtgcgggtggaagggcgt 297
           |||||||||||||||||||||||
Sbjct: 178 tcgccgtgcgggtggaagggcgt 200
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>emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11,
             complete sequence
          Length = 143582

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 275   tcgccgtgcgggtggaagggcgt 297
             |||||||||||||||||||||||
Sbjct: 14634 tcgccgtgcgggtggaagggcgt 14612
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>emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0116K07,
              complete sequence
          Length = 130779

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 275    tcgccgtgcgggtggaagggcgt 297
              |||||||||||||||||||||||
Sbjct: 114161 tcgccgtgcgggtggaagggcgt 114139
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 275      tcgccgtgcgggtggaagggcgt 297
                |||||||||||||||||||||||
Sbjct: 25232494 tcgccgtgcgggtggaagggcgt 25232472



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 185     aaggaggtgctggtggagct 204
               ||||||||||||||||||||
Sbjct: 9439283 aaggaggtgctggtggagct 9439302
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 323     tcgtcgctcaacctgacgcgctcgac 348
               ||||||||||||| ||||||||||||
Sbjct: 2257231 tcgtcgctcaacccgacgcgctcgac 2257206
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>gb|AY895166.1| Gallus gallus BAC bW108010 chemokine-like ligand 1, SCYA4, chemokine
             K203, and chemokine ah294 genes, complete cds
          Length = 112034

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 183   acaaggaggtgctggtggagct 204
             ||||||||||||||||||||||
Sbjct: 30242 acaaggaggtgctggtggagct 30221
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>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 136     ggtggtgctgataggcgcgca 156
               |||||||||||||||||||||
Sbjct: 1769897 ggtggtgctgataggcgcgca 1769917
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>gb|AC010906.10| Homo sapiens BAC clone RP11-566O4 from 2, complete sequence
          Length = 208571

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 87   tgtctcccctgctcctccagtccct 111
            ||||||||||||||||||| |||||
Sbjct: 8453 tgtctcccctgctcctccattccct 8429
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>dbj|D89070.1| Rattus norvegicus DNA for non-inducible carbony reductase, complete
           cds
          Length = 894

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 186 aggaggtgctggtggagctca 206
           |||||||||||||||||||||
Sbjct: 495 aggaggtgctggtggagctca 515
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 362    gtgttcggcggcttctcgcg 381
              ||||||||||||||||||||
Sbjct: 928829 gtgttcggcggcttctcgcg 928848
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>ref|XM_471280.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4533

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 185  aaggaggtgctggtggagct 204
            ||||||||||||||||||||
Sbjct: 3421 aaggaggtgctggtggagct 3402
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>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence
          Length = 211664

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 339    cgcgctcgaccatctccggc 358
              ||||||||||||||||||||
Sbjct: 184139 cgcgctcgaccatctccggc 184120
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 361     ggtgttcggcggcttctcgc 380
               ||||||||||||||||||||
Sbjct: 4850854 ggtgttcggcggcttctcgc 4850835
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 362     gtgttcggcggcttctcgcg 381
               ||||||||||||||||||||
Sbjct: 2271812 gtgttcggcggcttctcgcg 2271793
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>ref|XM_458807.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0D08756g)
           partial mRNA
          Length = 1248

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 386 ccggcgctcacgtcgctcga 405
           ||||||||||||||||||||
Sbjct: 400 ccggcgctcacgtcgctcga 419
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 361    ggtgttcggcggcttctcgc 380
              ||||||||||||||||||||
Sbjct: 969262 ggtgttcggcggcttctcgc 969281
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 357     gcccggtgttcggcggcttc 376
               ||||||||||||||||||||
Sbjct: 3118885 gcccggtgttcggcggcttc 3118904
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 362     gtgttcggcggcttctcgcg 381
               ||||||||||||||||||||
Sbjct: 3445395 gtgttcggcggcttctcgcg 3445376
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 361    ggtgttcggcggcttctcgc 380
              ||||||||||||||||||||
Sbjct: 524915 ggtgttcggcggcttctcgc 524896
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>ref|XM_855784.1| PREDICTED: Canis familiaris similar to Numb-interacting protein,
           transcript variant 4 (LOC487536), mRNA
          Length = 1119

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 101 ctccagtccctctgcatactcctc 124
           ||||||||||| ||||||||||||
Sbjct: 306 ctccagtccctttgcatactcctc 283
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>ref|XM_544660.2| PREDICTED: Canis familiaris similar to Numb-interacting protein,
           transcript variant 3 (LOC487536), mRNA
          Length = 1254

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 101 ctccagtccctctgcatactcctc 124
           ||||||||||| ||||||||||||
Sbjct: 441 ctccagtccctttgcatactcctc 418
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 361    ggtgttcggcggcttctcgc 380
              ||||||||||||||||||||
Sbjct: 618937 ggtgttcggcggcttctcgc 618918
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>emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS767 of Debaryomyces
              hansenii
          Length = 1602771

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 386    ccggcgctcacgtcgctcga 405
              ||||||||||||||||||||
Sbjct: 643567 ccggcgctcacgtcgctcga 643586
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 357     gcccggtgttcggcggcttc 376
               ||||||||||||||||||||
Sbjct: 1297675 gcccggtgttcggcggcttc 1297694
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 362     gtgttcggcggcttctcgcg 381
               ||||||||||||||||||||
Sbjct: 3186519 gtgttcggcggcttctcgcg 3186500
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>emb|AL662989.3|OSJN00190 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091C12,
             complete sequence
          Length = 138715

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   aaggaggtgctggtggagct 204
             ||||||||||||||||||||
Sbjct: 37401 aaggaggtgctggtggagct 37420
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>gb|AY996915.1| Burkholderia vietnamiensis strain MDIIIAzo30 GyrB (gyrB) gene,
            partial cds
          Length = 1721

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 339  cgcgctcgaccatctccggc 358
            ||||||||||||||||||||
Sbjct: 1084 cgcgctcgaccatctccggc 1065
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>gb|AY996914.1| Burkholderia vietnamiensis strain Na30 GyrB (gyrB) gene, partial cds
          Length = 1809

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 339  cgcgctcgaccatctccggc 358
            ||||||||||||||||||||
Sbjct: 1172 cgcgctcgaccatctccggc 1153
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>gb|AY996913.1| Burkholderia vietnamiensis strain TVV75 GyrB (gyrB) gene, partial cds
          Length = 1682

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 339  cgcgctcgaccatctccggc 358
            ||||||||||||||||||||
Sbjct: 1045 cgcgctcgaccatctccggc 1026
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>gb|AY987924.1| Burkholderia dolosa strain LMG 18942 GyrB (gyrB) gene, partial cds
          Length = 1889

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 339  cgcgctcgaccatctccggc 358
            ||||||||||||||||||||
Sbjct: 1252 cgcgctcgaccatctccggc 1233
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>gb|AY987923.1| Burkholderia dolosa strain LMG 18941 GyrB (gyrB) gene, partial cds
          Length = 1889

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 339  cgcgctcgaccatctccggc 358
            ||||||||||||||||||||
Sbjct: 1252 cgcgctcgaccatctccggc 1233
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>emb|AJ867398.1| Triticum aestivum mRNA for glycosyltransferase (a3a gene)
          Length = 1969

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 339  cgcgctcgaccatctccggc 358
            ||||||||||||||||||||
Sbjct: 1693 cgcgctcgaccatctccggc 1712
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 349     catctccggcccggtgttcg 368
               ||||||||||||||||||||
Sbjct: 1015674 catctccggcccggtgttcg 1015655
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>gb|AE005831.1| Caulobacter crescentus CB15 section 157 of 359 of the complete genome
          Length = 13304

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  cgtcgccgtgcgggtggaag 292
            ||||||||||||||||||||
Sbjct: 4811 cgtcgccgtgcgggtggaag 4792
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>gb|AE006016.1| Caulobacter crescentus CB15 section 342 of 359 of the complete genome
          Length = 10963

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 361  ggtgttcggcggcttctcgc 380
            ||||||||||||||||||||
Sbjct: 8422 ggtgttcggcggcttctcgc 8441
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>gb|AF145236.1|AF145236 Methanobacterium thermoautotrophicum strain ZH3 plasmid pME2200,
           complete plasmid sequence
          Length = 6205

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 tcctcctcgcaggtgaggtg 139
           ||||||||||||||||||||
Sbjct: 727 tcctcctcgcaggtgaggtg 746
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 357     gcccggtgttcggcggcttc 376
               ||||||||||||||||||||
Sbjct: 1337734 gcccggtgttcggcggcttc 1337715
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>gb|AC156835.2| Mus musculus BAC clone RP23-322L4 from chromosome 9, complete sequence
          Length = 216124

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 95     ctgctcctccagtccctctg 114
              ||||||||||||||||||||
Sbjct: 153600 ctgctcctccagtccctctg 153619
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>gb|AE004887.1| Pseudomonas aeruginosa PAO1, section 448 of 529 of the complete
            genome
          Length = 10139

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 361  ggtgttcggcggcttctcgc 380
            ||||||||||||||||||||
Sbjct: 2885 ggtgttcggcggcttctcgc 2904
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 242     ggcggctacgacgggtggcaggag 265
               |||||||||| |||||||||||||
Sbjct: 3749695 ggcggctacgccgggtggcaggag 3749672
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>emb|X17205.1|PPPMEC Methanobacterium thermoautotrophicum plasmid pME2001 DNA
          Length = 4439

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 tcctcctcgcaggtgaggtg 139
           ||||||||||||||||||||
Sbjct: 735 tcctcctcgcaggtgaggtg 754
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>emb|AJ420777.1|BCE420777 Burkholderia cepacia waaA gene for Kdo transferase
          Length = 1448

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 362 gtgttcggcggcttctcgcg 381
           ||||||||||||||||||||
Sbjct: 526 gtgttcggcggcttctcgcg 545
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>gb|U86302.1|CCU86302 Caulobacter crescentus topoisomerase IV ParC subunit (parC) gene,
           complete cds
          Length = 3060

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 273 cgtcgccgtgcgggtggaag 292
           ||||||||||||||||||||
Sbjct: 920 cgtcgccgtgcgggtggaag 901
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>gb|AC154511.2| Mus musculus BAC clone RP24-69N19 from 13, complete sequence
          Length = 197061

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 92     cccctgctcctccagtccctctgc 115
              |||||||||||||||||| |||||
Sbjct: 100707 cccctgctcctccagtccttctgc 100730
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>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence
          Length = 184425

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 339    cgcgctcgaccatctccggc 358
              ||||||||||||||||||||
Sbjct: 119425 cgcgctcgaccatctccggc 119406



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 339    cgcgctcgaccatctccggc 358
              ||||||||||||||||||||
Sbjct: 118634 cgcgctcgaccatctccggc 118615
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 357     gcccggtgttcggcggcttc 376
               ||||||||||||||||||||
Sbjct: 1664508 gcccggtgttcggcggcttc 1664489
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>gb|AC123620.14| Mus musculus chromosome 12, clone RP23-53J21, complete sequence
          Length = 182783

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     ctgctcctccagtccctctg 114
              ||||||||||||||||||||
Sbjct: 125538 ctgctcctccagtccctctg 125519
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>gb|U94696.1|CCU94696 Caulobacter crescentus DNA topoisomerase IV ParC subunit (parC)
           gene, complete cds
          Length = 2371

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 273 cgtcgccgtgcgggtggaag 292
           ||||||||||||||||||||
Sbjct: 291 cgtcgccgtgcgggtggaag 272
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 278     ccgtgcgggtggaagggcgt 297
               ||||||||||||||||||||
Sbjct: 5565676 ccgtgcgggtggaagggcgt 5565657
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>emb|AL672290.16| Mouse DNA sequence from clone RP23-471M13 on chromosome X, complete
              sequence
          Length = 178341

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 92     cccctgctcctccagtccctctgc 115
              |||||||||||||||||| |||||
Sbjct: 117920 cccctgctcctccagtccttctgc 117897


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,266,774
Number of Sequences: 3902068
Number of extensions: 2266774
Number of successful extensions: 45432
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44404
Number of HSP's gapped (non-prelim): 1018
length of query: 413
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 391
effective length of database: 17,147,199,772
effective search space: 6704555110852
effective search space used: 6704555110852
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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