ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl04f10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 117 2e-23
2dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic D... 117 2e-23
3dbj|AK119636.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 2e-23
4dbj|AK100713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 2e-23
5ref|XM_463541.1| Oryza sativa (japonica cultivar-group), predic... 113 3e-22
6gb|AY596586.1| Saccharum officinarum clone SCCCRZ2002H08, comple... 98 2e-17
7gb|AC134047.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.015
8gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome... 48 0.015
9gb|AC090018.12| Homo sapiens 3 BAC RP11-1D19 (Roswell Park Cance... 48 0.015
10dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.015
11dbj|AK109545.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.015
12emb|AJ338620.1|HSA338620 Homo sapiens genomic sequence surroundi... 48 0.015
13emb|AJ340775.1|HSA340775 Homo sapiens genomic sequence surroundi... 48 0.015
14emb|AJ341443.1|HSA341443 Homo sapiens genomic sequence surroundi... 48 0.015
15emb|AJ326070.1|HSA326070 Homo sapiens genomic sequence surroundi... 48 0.015
16gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.015
17ref|NM_194513.1| Oryza sativa (japonica cultivar-group) putative... 42 0.95
18gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome... 42 0.95
19gb|AC010295.7| Homo sapiens chromosome 5 clone CTB-143H13, compl... 42 0.95
20gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.95
21emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete ... 42 0.95
22ref|XM_690503.1| PREDICTED: Danio rerio similar to sodium-calciu... 42 0.95
23dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.95
24emb|X65556.1|SLGLYUB S.lividans tRNA-GlyU beta gene 42 0.95
25emb|AJ333186.1|HSA333186 Homo sapiens genomic sequence surroundi... 42 0.95
26dbj|AK100339.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.95
27dbj|AK071821.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.95
28emb|BX890602.8| Zebrafish DNA sequence from clone DKEYP-109H9 in... 42 0.95
29gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 0.95
30ref|XM_528529.1| PREDICTED: Pan troglodytes similar to doublesex... 40 3.8
31ref|XM_464814.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.8
32ref|XM_598445.2| PREDICTED: Bos taurus similar to Chloride chann... 40 3.8
33ref|XM_877634.1| PREDICTED: Bos taurus similar to Chloride chann... 40 3.8
34ref|XM_808184.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 3.8
35ref|XM_811489.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 3.8
36gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 3.8
37gb|AC135614.15| Pan troglodytes clone rp43-3m22, complete sequence 40 3.8
38gb|AC048352.18| Homo sapiens 12 BAC RP11-871F6 (Roswell Park Can... 40 3.8
39dbj|AB214954.1| Streptomyces griseus griE, griF genes for copper... 40 3.8
40dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
41dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
42gb|AC026305.20| Homo sapiens 3 BAC RP11-91A15 (Roswell Park Canc... 40 3.8
43ref|XM_221125.3| PREDICTED: Rattus norvegicus similar to tripart... 40 3.8
44dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 3.8
45dbj|AP006062.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
46dbj|AP005563.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
47dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
48dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
49emb|AJ341642.1|HSA341642 Homo sapiens genomic sequence surroundi... 40 3.8
50emb|AJ340862.1|HSA340862 Homo sapiens genomic sequence surroundi... 40 3.8
51gb|AF175313.1|AF175313 Oncorhynchus mykiss cardiac sodium-calciu... 40 3.8
52dbj|AK062216.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
53emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 3.8
54emb|AL732352.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 3.8
55gb|M30609.1|MXARTMSD M.xanthus reverse transcriptase (Mx65-RT) g... 40 3.8
56emb|AL607108.17| Mouse DNA sequence from clone RP23-42F6 on chro... 40 3.8 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  117 bits (59), Expect = 2e-23
 Identities = 97/109 (88%), Gaps = 3/109 (2%)
 Strand = Plus / Minus

                                                                            
Query: 180      tgatggcattcggccgaggcgggaagatggacggcaggcggccctcgtcgccgtcttcgt 239
                |||||||||| |||||||||  |||||||||||||||||||   ||||||||||| ||||
Sbjct: 38384272 tgatggcatttggccgaggctcgaagatggacggcaggcgg---tcgtcgccgtcgtcgt 38384216

                                                                 
Query: 240      cgttgtgcacgacgaccaccgtcgtggtgtttgtggcgctctgcgtggt 288
                || | |||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct: 38384215 cgctctgcacgacgaccaccgtcgtcgtgttcgtggcgctctgcctggt 38384167
to top
>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1065E10
          Length = 183580

 Score =  117 bits (59), Expect = 2e-23
 Identities = 97/109 (88%), Gaps = 3/109 (2%)
 Strand = Plus / Minus

                                                                          
Query: 180    tgatggcattcggccgaggcgggaagatggacggcaggcggccctcgtcgccgtcttcgt 239
              |||||||||| |||||||||  |||||||||||||||||||   ||||||||||| ||||
Sbjct: 145097 tgatggcatttggccgaggctcgaagatggacggcaggcgg---tcgtcgccgtcgtcgt 145041

                                                               
Query: 240    cgttgtgcacgacgaccaccgtcgtggtgtttgtggcgctctgcgtggt 288
              || | |||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct: 145040 cgctctgcacgacgaccaccgtcgtcgtgttcgtggcgctctgcctggt 144992
to top
>dbj|AK119636.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F03, full
           insert sequence
          Length = 2826

 Score =  117 bits (59), Expect = 2e-23
 Identities = 97/109 (88%), Gaps = 3/109 (2%)
 Strand = Plus / Plus

                                                                       
Query: 180 tgatggcattcggccgaggcgggaagatggacggcaggcggccctcgtcgccgtcttcgt 239
           |||||||||| |||||||||  |||||||||||||||||||   ||||||||||| ||||
Sbjct: 137 tgatggcatttggccgaggctcgaagatggacggcaggcgg---tcgtcgccgtcgtcgt 193

                                                            
Query: 240 cgttgtgcacgacgaccaccgtcgtggtgtttgtggcgctctgcgtggt 288
           || | |||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct: 194 cgctctgcacgacgaccaccgtcgtcgtgttcgtggcgctctgcctggt 242
to top
>dbj|AK100713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115H24, full
           insert sequence
          Length = 2988

 Score =  117 bits (59), Expect = 2e-23
 Identities = 97/109 (88%), Gaps = 3/109 (2%)
 Strand = Plus / Plus

                                                                       
Query: 180 tgatggcattcggccgaggcgggaagatggacggcaggcggccctcgtcgccgtcttcgt 239
           |||||||||| |||||||||  |||||||||||||||||||   ||||||||||| ||||
Sbjct: 303 tgatggcatttggccgaggctcgaagatggacggcaggcgg---tcgtcgccgtcgtcgt 359

                                                            
Query: 240 cgttgtgcacgacgaccaccgtcgtggtgtttgtggcgctctgcgtggt 288
           || | |||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct: 360 cgctctgcacgacgaccaccgtcgtcgtgttcgtggcgctctgcctggt 408
to top
>ref|XM_463541.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2421

 Score =  113 bits (57), Expect = 3e-22
 Identities = 95/107 (88%), Gaps = 3/107 (2%)
 Strand = Plus / Plus

                                                                       
Query: 182 atggcattcggccgaggcgggaagatggacggcaggcggccctcgtcgccgtcttcgtcg 241
           |||||||| |||||||||  |||||||||||||||||||   ||||||||||| ||||||
Sbjct: 1   atggcatttggccgaggctcgaagatggacggcaggcgg---tcgtcgccgtcgtcgtcg 57

                                                          
Query: 242 ttgtgcacgacgaccaccgtcgtggtgtttgtggcgctctgcgtggt 288
            | |||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct: 58  ctctgcacgacgaccaccgtcgtcgtgttcgtggcgctctgcctggt 104
to top
>gb|AY596586.1| Saccharum officinarum clone SCCCRZ2002H08, complete sequence
          Length = 2841

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 96/111 (86%), Gaps = 3/111 (2%)
 Strand = Plus / Plus

                                                                       
Query: 178 actgatggcattcggccgaggcgggaagatggacggcaggcggccctcgtcgccgtcttc 237
           |||||||||||| |||||||| ||||||||||||||| | ||||   ||||| |||| ||
Sbjct: 212 actgatggcatttggccgaggtgggaagatggacggccgccggc---cgtcgtcgtcgtc 268

                                                              
Query: 238 gtcgttgtgcacgacgaccaccgtcgtggtgtttgtggcgctctgcgtggt 288
           |||||| |||||||| ||||| ||||| || ||||||||||||||| ||||
Sbjct: 269 gtcgttctgcacgaccaccacggtcgtcgtctttgtggcgctctgcctggt 319
to top
>gb|AC134047.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052O08
              map MAP_LOC, complete sequence
          Length = 154839

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                              
Query: 236    tcgtcgttgtgcacgacgaccaccgtcgtggtgtttgtggcgctctgc 283
              |||||| ||||| ||||| | |||||||| ||||| ||||||||||||
Sbjct: 143183 tcgtcgctgtgctcgacggcgaccgtcgtcgtgttcgtggcgctctgc 143230
to top
>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0009F15, complete sequence
          Length = 142289

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                             
Query: 236   tcgtcgttgtgcacgacgaccaccgtcgtggtgtttgtggcgctctgc 283
             |||||| ||||| ||||| | |||||||| ||||| ||||||||||||
Sbjct: 13036 tcgtcgctgtgctcgacggcgaccgtcgtcgtgttcgtggcgctctgc 13083
to top
>gb|AC090018.12| Homo sapiens 3 BAC RP11-1D19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 205638

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 48     ccccggccggcgaggtgcgcgcgg 71
              ||||||||||||||||||||||||
Sbjct: 108108 ccccggccggcgaggtgcgcgcgg 108085
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                               
Query: 236     tcgtcgttgtgcacgacgaccaccgtcgtggtgtttgtggcgctctgc 283
               |||||| ||||| ||||| | |||||||| ||||| ||||||||||||
Sbjct: 4361673 tcgtcgctgtgctcgacggcgaccgtcgtcgtgttcgtggcgctctgc 4361720
to top
>dbj|AK109545.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-E05, full
           insert sequence
          Length = 3015

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 236 tcgtcgttgtgcacgacgaccaccgtcgtggtgtttgtggcgctctgc 283
           |||||| ||||| ||||| | |||||||| ||||| ||||||||||||
Sbjct: 238 tcgtcgctgtgctcgacggcgaccgtcgtcgtgttcgtggcgctctgc 285
to top
>emb|AJ338620.1|HSA338620 Homo sapiens genomic sequence surrounding NotI site, clone
          NB1-803R
          Length = 460

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 ccccggccggcgaggtgcgcgcgg 71
          ||||||||||||||||||||||||
Sbjct: 45 ccccggccggcgaggtgcgcgcgg 68
to top
>emb|AJ340775.1|HSA340775 Homo sapiens genomic sequence surrounding NotI site, clone
          NL1-GA3RS
          Length = 667

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 ccccggccggcgaggtgcgcgcgg 71
          ||||||||||||||||||||||||
Sbjct: 45 ccccggccggcgaggtgcgcgcgg 68
to top
>emb|AJ341443.1|HSA341443 Homo sapiens genomic sequence surrounding NotI site, clone
          NL1-FL23RS
          Length = 557

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 ccccggccggcgaggtgcgcgcgg 71
          ||||||||||||||||||||||||
Sbjct: 45 ccccggccggcgaggtgcgcgcgg 68
to top
>emb|AJ326070.1|HSA326070 Homo sapiens genomic sequence surrounding NotI site, clone
          NR1-194R
          Length = 724

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 ccccggccggcgaggtgcgcgcgg 71
          ||||||||||||||||||||||||
Sbjct: 45 ccccggccggcgaggtgcgcgcgg 68
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                               
Query: 236     tcgtcgttgtgcacgacgaccaccgtcgtggtgtttgtggcgctctgc 283
               |||||| ||||| ||||| | |||||||| ||||| ||||||||||||
Sbjct: 4370367 tcgtcgctgtgctcgacggcgaccgtcgtcgtgttcgtggcgctctgc 4370414
to top
>ref|NM_194513.1| Oryza sativa (japonica cultivar-group) putative protein kinase
           (OSJNBa0071K19.13), mRNA
          Length = 1707

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 225 cgtcgccgtcttcgtcgttgt 245
           |||||||||||||||||||||
Sbjct: 59  cgtcgccgtcttcgtcgttgt 79
to top
>gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0071K19,
              complete sequence
          Length = 174752

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 225    cgtcgccgtcttcgtcgttgt 245
              |||||||||||||||||||||
Sbjct: 118443 cgtcgccgtcttcgtcgttgt 118423
to top
>gb|AC010295.7| Homo sapiens chromosome 5 clone CTB-143H13, complete sequence
          Length = 108051

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 41   cccagctccccggccggcgag 61
            |||||||||||||||||||||
Sbjct: 7532 cccagctccccggccggcgag 7512
to top
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
              Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 225    cgtcgccgtcttcgtcgttgt 245
              |||||||||||||||||||||
Sbjct: 353385 cgtcgccgtcttcgtcgttgt 353365
to top
>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29
          Length = 303550

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 218    cggccctcgtcgccgtcttcgtcgt 242
              |||||||||||| ||||||||||||
Sbjct: 241542 cggccctcgtcggcgtcttcgtcgt 241518
to top
>ref|XM_690503.1| PREDICTED: Danio rerio similar to sodium-calcium exchanger
            (LOC567212), mRNA
          Length = 1422

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 256  caccgtcgtggtgtttgtggcgctc 280
            ||||| |||||||||||||||||||
Sbjct: 1005 caccgccgtggtgtttgtggcgctc 1029
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
              complete sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 225    cgtcgccgtcttcgtcgttgt 245
              |||||||||||||||||||||
Sbjct: 353385 cgtcgccgtcttcgtcgttgt 353365
to top
>emb|X65556.1|SLGLYUB S.lividans tRNA-GlyU beta gene
          Length = 2576

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 218  cggccctcgtcgccgtcttcgtcgt 242
            |||||||||||| ||||||||||||
Sbjct: 1813 cggccctcgtcggcgtcttcgtcgt 1837
to top
>emb|AJ333186.1|HSA333186 Homo sapiens genomic sequence surrounding NotI site, clone
          NR1-TG13RS
          Length = 600

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 47 tccccggccggcgaggtgcgcgcgg 71
          |||||||||||||||| ||||||||
Sbjct: 45 tccccggccggcgaggggcgcgcgg 69
to top
>dbj|AK100339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081I19, full
           insert sequence
          Length = 2160

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 225 cgtcgccgtcttcgtcgttgt 245
           |||||||||||||||||||||
Sbjct: 280 cgtcgccgtcttcgtcgttgt 300
to top
>dbj|AK071821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114J15, full
           insert sequence
          Length = 1977

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 225 cgtcgccgtcttcgtcgttgt 245
           |||||||||||||||||||||
Sbjct: 280 cgtcgccgtcttcgtcgttgt 300
to top
>emb|BX890602.8| Zebrafish DNA sequence from clone DKEYP-109H9 in linkage group 18,
             complete sequence
          Length = 191296

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 256   caccgtcgtggtgtttgtggcgctc 280
             ||||| |||||||||||||||||||
Sbjct: 48035 caccgccgtggtgtttgtggcgctc 48059
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 225    cgtcgccgtcttcgtcgttgt 245
              |||||||||||||||||||||
Sbjct: 353382 cgtcgccgtcttcgtcgttgt 353362
to top
>ref|XM_528529.1| PREDICTED: Pan troglodytes similar to doublesex and mab-3 related
           transcription factor 2 (LOC473159), mRNA
          Length = 2433

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 223 ctcgtcgccgtcttcgtcgt 242
           ||||||||||||||||||||
Sbjct: 468 ctcgtcgccgtcttcgtcgt 449
to top
>ref|XM_464814.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 609

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 222 cctcgtcgccgtcttcgtcgttgtgcac 249
           |||||||| |||||||||||| ||||||
Sbjct: 99  cctcgtcgtcgtcttcgtcgtcgtgcac 126
to top
>ref|XM_598445.2| PREDICTED: Bos taurus similar to Chloride channel protein 6 (ClC-6),
            transcript variant 1 (LOC520210), mRNA
          Length = 2797

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 253  gaccaccgtcgtggtgtttgtggc 276
            ||||||||| ||||||||||||||
Sbjct: 1336 gaccaccgtggtggtgtttgtggc 1359
to top
>ref|XM_877634.1| PREDICTED: Bos taurus similar to Chloride channel protein 6 (ClC-6),
            transcript variant 2 (LOC520210), mRNA
          Length = 1567

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 253  gaccaccgtcgtggtgtttgtggc 276
            ||||||||| ||||||||||||||
Sbjct: 1336 gaccaccgtggtggtgtttgtggc 1359
to top
>ref|XM_808184.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506367.174) partial mRNA
          Length = 408

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 236 tcgtcgttgtgcacgacgac 255
           ||||||||||||||||||||
Sbjct: 369 tcgtcgttgtgcacgacgac 350
to top
>ref|XM_811489.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506629.90) partial mRNA
          Length = 408

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 236 tcgtcgttgtgcacgacgac 255
           ||||||||||||||||||||
Sbjct: 369 tcgtcgttgtgcacgacgac 350
to top
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 222     cctcgtcgccgtcttcgtcg 241
               ||||||||||||||||||||
Sbjct: 2397334 cctcgtcgccgtcttcgtcg 2397353
to top
>gb|AC135614.15| Pan troglodytes clone rp43-3m22, complete sequence
          Length = 118935

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 70    ggtgtgtggcaggaagcagcaagc 93
             |||| |||||||||||||||||||
Sbjct: 48288 ggtgggtggcaggaagcagcaagc 48311
to top
>gb|AC048352.18| Homo sapiens 12 BAC RP11-871F6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 216792

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    agcagcaagccagcaaagct 103
             ||||||||||||||||||||
Sbjct: 16209 agcagcaagccagcaaagct 16228
to top
>dbj|AB214954.1| Streptomyces griseus griE, griF genes for copper chaperon,
           ortho-aminophenol oxidase, complete cds
          Length = 1530

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 137 ggccgcgtgcagcggggtgg 156
           ||||||||||||||||||||
Sbjct: 367 ggccgcgtgcagcggggtgg 348
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 212     ggcaggcggccctcgtcgcc 231
               ||||||||||||||||||||
Sbjct: 1787592 ggcaggcggccctcgtcgcc 1787573
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 222     cctcgtcgccgtcttcgtcgttgtgcac 249
               |||||||| |||||||||||| ||||||
Sbjct: 8362905 cctcgtcgtcgtcttcgtcgtcgtgcac 8362878
to top
>gb|AC026305.20| Homo sapiens 3 BAC RP11-91A15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 104150

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   tgtacatgtgctagtgggac 179
             ||||||||||||||||||||
Sbjct: 37641 tgtacatgtgctagtgggac 37622
to top
>ref|XM_221125.3| PREDICTED: Rattus norvegicus similar to tripartite
          motif-containing 65 (LOC303684), mRNA
          Length = 1384

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 31 ggagccgcgccccagctccc 50
          ||||||||||||||||||||
Sbjct: 28 ggagccgcgccccagctccc 47
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     ccggcgaggtgcgcgcggtg 73
              ||||||||||||||||||||
Sbjct: 157990 ccggcgaggtgcgcgcggtg 157971
to top
>dbj|AP006062.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0415D04
          Length = 176627

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 212    ggcaggcggccctcgtcgcc 231
              ||||||||||||||||||||
Sbjct: 174164 ggcaggcggccctcgtcgcc 174145
to top
>dbj|AP005563.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1227_D07
          Length = 118358

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   ggcaggcggccctcgtcgcc 231
             ||||||||||||||||||||
Sbjct: 26254 ggcaggcggccctcgtcgcc 26235
to top
>dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0011N12
          Length = 158586

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 222   cctcgtcgccgtcttcgtcgttgtgcac 249
             |||||||| |||||||||||| ||||||
Sbjct: 15755 cctcgtcgtcgtcttcgtcgtcgtgcac 15728
to top
>dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0090H18
          Length = 174842

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 222    cctcgtcgccgtcttcgtcgttgtgcac 249
              |||||||| |||||||||||| ||||||
Sbjct: 139576 cctcgtcgtcgtcttcgtcgtcgtgcac 139549
to top
>emb|AJ341642.1|HSA341642 Homo sapiens genomic sequence surrounding NotI site, clone
          NR1-CF19RS
          Length = 674

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 48 ccccggccggcgaggtgcgcgcgg 71
          |||||| |||||||||||||||||
Sbjct: 45 ccccggacggcgaggtgcgcgcgg 68
to top
>emb|AJ340862.1|HSA340862 Homo sapiens genomic sequence surrounding NotI site, clone
          NR1-ED2RS
          Length = 586

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 52 ggccggcgaggtgcgcgcgg 71
          ||||||||||||||||||||
Sbjct: 49 ggccggcgaggtgcgcgcgg 68
to top
>gb|AF175313.1|AF175313 Oncorhynchus mykiss cardiac sodium-calcium exchanger (NCX) mRNA,
            complete cds
          Length = 3302

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 257  accgtcgtggtgtttgtggcgctc 280
            |||| |||||||||||||||||||
Sbjct: 2562 accgccgtggtgtttgtggcgctc 2585
to top
>dbj|AK062216.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A10, full
           insert sequence
          Length = 1055

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 222 cctcgtcgccgtcttcgtcg 241
           ||||||||||||||||||||
Sbjct: 64  cctcgtcgccgtcttcgtcg 83
to top
>emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete
            sequence
          Length = 84361

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 51   cggccggcgaggtgcgcgcg 70
            ||||||||||||||||||||
Sbjct: 9240 cggccggcgaggtgcgcgcg 9259
to top
>emb|AL732352.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0124B04, complete
              sequence
          Length = 115564

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     cggccggcgaggtgcgcgcg 70
              ||||||||||||||||||||
Sbjct: 104187 cggccggcgaggtgcgcgcg 104206
to top
>gb|M30609.1|MXARTMSD M.xanthus reverse transcriptase (Mx65-RT) gene, multicopy
            single-stranded DNA (msDNA) and RNA (msdRNA) genes,
            complete cds
          Length = 1640

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 52   ggccggcgaggtgcgcgcggtgtg 75
            ||||| ||||||||||||||||||
Sbjct: 1485 ggccgtcgaggtgcgcgcggtgtg 1462
to top
>emb|AL607108.17| Mouse DNA sequence from clone RP23-42F6 on chromosome 11, complete
              sequence
          Length = 202842

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     ggagccgcgccccagctccc 50
              ||||||||||||||||||||
Sbjct: 147553 ggagccgcgccccagctccc 147534


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,924,194
Number of Sequences: 3902068
Number of extensions: 1924194
Number of successful extensions: 40015
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39634
Number of HSP's gapped (non-prelim): 375
length of query: 288
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 266
effective length of database: 17,147,199,772
effective search space: 4561155139352
effective search space used: 4561155139352
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top