ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl04f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 238 1e-59
2dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic D... 238 1e-59
3ref|NM_197801.1| Oryza sativa (japonica cultivar-group) hypothet... 46 0.11
4gb|AC087599.14| Oryza sativa chromosome 10 BAC OSJNBa0057L21 gen... 46 0.11
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 46 0.11
7ref|XM_482079.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.7
8ref|NM_190164.1| Oryza sativa (japonica cultivar-group), predic... 42 1.7
9ref|XM_844530.1| PREDICTED: Canis familiaris similar to growth a... 42 1.7
10gb|AC125782.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
11gb|AC145349.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
12dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
13dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
14dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
15dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
16dbj|AP004397.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
17dbj|AP003962.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
18dbj|AK119762.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
19dbj|AK106745.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
20dbj|AK101199.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
21dbj|AK069671.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
22gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
23ref|XM_479749.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.6
24ref|NM_186040.2| Oryza sativa (japonica cultivar-group), mRNA 40 6.6
25gb|AC175200.2| Sporobolomyces roseus clone JGIBAIF-29B10, comple... 40 6.6
26ref|XM_756895.1| Ustilago maydis 521 hypothetical protein (UM058... 40 6.6
27gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 6.6
28dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
29gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.6
30dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
31dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
32dbj|AK106855.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
33dbj|AK071947.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
34gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 6.6
35gb|L33919.1|USMMYP1A Corn smut fungus (clone pM1-1) myp1 gene, c... 40 6.6
36dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 6.6

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  238 bits (120), Expect = 1e-59
 Identities = 252/296 (85%)
 Strand = Plus / Plus

                                                                           
Query: 192     ctcgcccggctcggccgcctgcgggaggcccgggaggtgttcgacgccatgccacaccgc 251
               |||| ||| ||||||||| || |||||||| |||||||||||||||| ||||| | ||| 
Sbjct: 2812364 ctcggccgcctcggccgcgtgggggaggccagggaggtgttcgacgcgatgccgcgccgg 2812423

                                                                           
Query: 252     agcatcttcgcctggaacaccatgatctccgcctactgcaacaatgggatgcccgaggac 311
                 |||| ||||||||||| |||||||||| ||||||||| |||| ||||||||||| | |
Sbjct: 2812424 gacatcatcgcctggaactccatgatctctgcctactgccacaacgggatgcccgacgcc 2812483

                                                                           
Query: 312     gcgaaagccctcgtggatgccatctccggagggaacgtgcgcacgagcaccatcctgctg 371
               ||||  | ||||   || ||||||||||| |||||| |||||||| || ||||||| |||
Sbjct: 2812484 gcgagggacctctacgacgccatctccggcgggaacatgcgcacgggcgccatcctcctg 2812543

                                                                           
Query: 372     tcggggtatgcccgcctcggccgcgtgctggatgcccgcagggtgtttgacggaatgctc 431
               ||||| || | |||||||||||||||||| || || ||||||||||| || |||||||||
Sbjct: 2812544 tcgggctacggccgcctcggccgcgtgctcgaggctcgcagggtgttcgatggaatgctc 2812603

                                                                       
Query: 432     gagcggaacaccatagcatggaacgccatggtcagctgctatgcccggaacgggga 487
               |||||||||||| | || |||||||||||| |||||||||||| || |||||||||
Sbjct: 2812604 gagcggaacaccgtggcgtggaacgccatgatcagctgctatgtccagaacgggga 2812659



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>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0050G13
          Length = 150685

 Score =  238 bits (120), Expect = 1e-59
 Identities = 252/296 (85%)
 Strand = Plus / Plus

                                                                         
Query: 192   ctcgcccggctcggccgcctgcgggaggcccgggaggtgttcgacgccatgccacaccgc 251
             |||| ||| ||||||||| || |||||||| |||||||||||||||| ||||| | ||| 
Sbjct: 80592 ctcggccgcctcggccgcgtgggggaggccagggaggtgttcgacgcgatgccgcgccgg 80651

                                                                         
Query: 252   agcatcttcgcctggaacaccatgatctccgcctactgcaacaatgggatgcccgaggac 311
               |||| ||||||||||| |||||||||| ||||||||| |||| ||||||||||| | |
Sbjct: 80652 gacatcatcgcctggaactccatgatctctgcctactgccacaacgggatgcccgacgcc 80711

                                                                         
Query: 312   gcgaaagccctcgtggatgccatctccggagggaacgtgcgcacgagcaccatcctgctg 371
             ||||  | ||||   || ||||||||||| |||||| |||||||| || ||||||| |||
Sbjct: 80712 gcgagggacctctacgacgccatctccggcgggaacatgcgcacgggcgccatcctcctg 80771

                                                                         
Query: 372   tcggggtatgcccgcctcggccgcgtgctggatgcccgcagggtgtttgacggaatgctc 431
             ||||| || | |||||||||||||||||| || || ||||||||||| || |||||||||
Sbjct: 80772 tcgggctacggccgcctcggccgcgtgctcgaggctcgcagggtgttcgatggaatgctc 80831

                                                                     
Query: 432   gagcggaacaccatagcatggaacgccatggtcagctgctatgcccggaacgggga 487
             |||||||||||| | || |||||||||||| |||||||||||| || |||||||||
Sbjct: 80832 gagcggaacaccgtggcgtggaacgccatgatcagctgctatgtccagaacgggga 80887



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>ref|NM_197801.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0057L21.17), mRNA
          Length = 1590

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 225 gaggtgttcgacgccatgccacaccgc 251
           |||||||||| ||||||||||||||||
Sbjct: 442 gaggtgttcgccgccatgccacaccgc 468



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>gb|AC087599.14| Oryza sativa chromosome 10 BAC OSJNBa0057L21 genomic sequence, complete
             sequence
          Length = 183046

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 225   gaggtgttcgacgccatgccacaccgc 251
             |||||||||| ||||||||||||||||
Sbjct: 60425 gaggtgttcgccgccatgccacaccgc 60399



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 225      gaggtgttcgacgccatgccacaccgc 251
                |||||||||| ||||||||||||||||
Sbjct: 21947896 gaggtgttcgccgccatgccacaccgc 21947922



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 225      gaggtgttcgacgccatgccacaccgc 251
                |||||||||| ||||||||||||||||
Sbjct: 21959559 gaggtgttcgccgccatgccacaccgc 21959585



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>ref|XM_482079.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2405

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 390 ggccgcgtgctggatgcccgcagggtgtttgacggaatgctcgagcggaacac 442
           |||||||||  |||||||||   ||||||||| |||||||  |||||||||||
Sbjct: 639 ggccgcgtgagggatgcccgacaggtgtttgatggaatgccagagcggaacac 691



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>ref|NM_190164.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1647

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 408 cgcagggtgtttgacggaatgctcgagcggaac 440
           ||||||||||| ||||||||||| || ||||||
Sbjct: 328 cgcagggtgttcgacggaatgctggaccggaac 360



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>ref|XM_844530.1| PREDICTED: Canis familiaris similar to growth arrest-specific 6
           (LOC607745), mRNA
          Length = 2307

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 215 ggaggcccgggaggtgttcga 235
           |||||||||||||||||||||
Sbjct: 210 ggaggcccgggaggtgttcga 230



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>gb|AC125782.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0095P22, complete sequence
          Length = 162766

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 224    ggaggtgttcgacgccatgcc 244
              |||||||||||||||||||||
Sbjct: 121144 ggaggtgttcgacgccatgcc 121164



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 224    ggaggtgttcgacgccatgcc 244
              |||||||||||||||||||||
Sbjct: 112019 ggaggtgttcgacgccatgcc 112039



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 224    ggaggtgttcgacgccatgcc 244
              |||||||||||||||||||||
Sbjct: 105923 ggaggtgttcgacgccatgcc 105943



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 224   ggaggtgttcgacgccatgcc 244
             |||||||||||||||||||||
Sbjct: 99827 ggaggtgttcgacgccatgcc 99847



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>gb|AC145349.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0096I10, complete sequence
          Length = 171946

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 224    ggaggtgttcgacgccatgcc 244
              |||||||||||||||||||||
Sbjct: 110271 ggaggtgttcgacgccatgcc 110251



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 224    ggaggtgttcgacgccatgcc 244
              |||||||||||||||||||||
Sbjct: 104175 ggaggtgttcgacgccatgcc 104155



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 224   ggaggtgttcgacgccatgcc 244
             |||||||||||||||||||||
Sbjct: 98079 ggaggtgttcgacgccatgcc 98059



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 224   ggaggtgttcgacgccatgcc 244
             |||||||||||||||||||||
Sbjct: 88954 ggaggtgttcgacgccatgcc 88934



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 224      ggaggtgttcgacgccatgcc 244
                |||||||||||||||||||||
Sbjct: 24320035 ggaggtgttcgacgccatgcc 24320055



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 224      ggaggtgttcgacgccatgcc 244
                |||||||||||||||||||||
Sbjct: 24310910 ggaggtgttcgacgccatgcc 24310930



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 224      ggaggtgttcgacgccatgcc 244
                |||||||||||||||||||||
Sbjct: 24304814 ggaggtgttcgacgccatgcc 24304834



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 224      ggaggtgttcgacgccatgcc 244
                |||||||||||||||||||||
Sbjct: 24298718 ggaggtgttcgacgccatgcc 24298738



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                     
Query: 390      ggccgcgtgctggatgcccgcagggtgtttgacggaatgctcgagcggaacac 442
                |||||||||  |||||||||   ||||||||| |||||||  |||||||||||
Sbjct: 17622101 ggccgcgtgagggatgcccgacaggtgtttgatggaatgccagagcggaacac 17622153



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 401    ggatgcccgcagggtgtttgacggaatg 428
              ||||||||| ||||||||||| ||||||
Sbjct: 654525 ggatgcccggagggtgtttgatggaatg 654498



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 408      cgcagggtgtttgacggaatgctcgagcggaac 440
                ||||||||||| ||||||||||| || ||||||
Sbjct: 38221270 cgcagggtgttcgacggaatgctggaccggaac 38221238



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>dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0018C10
          Length = 200183

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 408    cgcagggtgtttgacggaatgctcgagcggaac 440
              ||||||||||| ||||||||||| || ||||||
Sbjct: 140504 cgcagggtgttcgacggaatgctggaccggaac 140472



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>dbj|AP004397.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0436B06
          Length = 148947

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 390   ggccgcgtgctggatgcccgcagggtgtttgacggaatgctcgagcggaacac 442
             |||||||||  |||||||||   ||||||||| |||||||  |||||||||||
Sbjct: 98751 ggccgcgtgagggatgcccgacaggtgtttgatggaatgccagagcggaacac 98803



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>dbj|AP003962.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OJ1705_C03
          Length = 118339

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                 
Query: 390  ggccgcgtgctggatgcccgcagggtgtttgacggaatgctcgagcggaacac 442
            |||||||||  |||||||||   ||||||||| |||||||  |||||||||||
Sbjct: 7490 ggccgcgtgagggatgcccgacaggtgtttgatggaatgccagagcggaacac 7542



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>dbj|AK119762.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-G08, full
            insert sequence
          Length = 1638

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 224  ggaggtgttcgacgccatgcc 244
            |||||||||||||||||||||
Sbjct: 1007 ggaggtgttcgacgccatgcc 987



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>dbj|AK106745.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-B11, full
           insert sequence
          Length = 1614

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 224 ggaggtgttcgacgccatgcc 244
           |||||||||||||||||||||
Sbjct: 980 ggaggtgttcgacgccatgcc 960



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>dbj|AK101199.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030L22, full
           insert sequence
          Length = 2405

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 390 ggccgcgtgctggatgcccgcagggtgtttgacggaatgctcgagcggaacac 442
           |||||||||  |||||||||   ||||||||| |||||||  |||||||||||
Sbjct: 639 ggccgcgtgagggatgcccgacaggtgtttgatggaatgccagagcggaacac 691



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>dbj|AK069671.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027J18, full
           insert sequence
          Length = 2017

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 408 cgcagggtgtttgacggaatgctcgagcggaac 440
           ||||||||||| ||||||||||| || ||||||
Sbjct: 431 cgcagggtgttcgacggaatgctggaccggaac 463



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 224      ggaggtgttcgacgccatgcc 244
                |||||||||||||||||||||
Sbjct: 24631704 ggaggtgttcgacgccatgcc 24631724



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 224      ggaggtgttcgacgccatgcc 244
                |||||||||||||||||||||
Sbjct: 24622579 ggaggtgttcgacgccatgcc 24622599



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 224      ggaggtgttcgacgccatgcc 244
                |||||||||||||||||||||
Sbjct: 24616483 ggaggtgttcgacgccatgcc 24616503



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 224      ggaggtgttcgacgccatgcc 244
                |||||||||||||||||||||
Sbjct: 24610387 ggaggtgttcgacgccatgcc 24610407



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>ref|XM_479749.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2738

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 401 ggatgcccgcagggtgtttgacggaatg 428
           ||||||||| ||||||||||| ||||||
Sbjct: 738 ggatgcccggagggtgtttgatggaatg 765



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>ref|NM_186040.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1679

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 405 gcccgcagggtgtttgacggaatg 428
           |||||||||||||| |||||||||
Sbjct: 189 gcccgcagggtgttcgacggaatg 212



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>gb|AC175200.2| Sporobolomyces roseus clone JGIBAIF-29B10, complete sequence
          Length = 40413

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   ccgtatccaggagctcgccc 198
             ||||||||||||||||||||
Sbjct: 33786 ccgtatccaggagctcgccc 33767



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>ref|XM_756895.1| Ustilago maydis 521 hypothetical protein (UM05841.1) partial mRNA
          Length = 1515

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 255  atcttcgcctggaacaccat 274
            ||||||||||||||||||||
Sbjct: 1410 atcttcgcctggaacaccat 1391



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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 387     ctcggccgcgtgctggatgc 406
               ||||||||||||||||||||
Sbjct: 4674376 ctcggccgcgtgctggatgc 4674395



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 405      gcccgcagggtgtttgacggaatg 428
                |||||||||||||| |||||||||
Sbjct: 27895537 gcccgcagggtgttcgacggaatg 27895560



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 193     tcgcccggctcggccgcctgcggg 216
               |||||||| |||||||||||||||
Sbjct: 2924250 tcgcccgggtcggccgcctgcggg 2924227



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>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0453E03
          Length = 159980

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 405   gcccgcagggtgtttgacggaatg 428
             |||||||||||||| |||||||||
Sbjct: 58895 gcccgcagggtgttcgacggaatg 58918



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>dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0498H04
          Length = 151046

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 401   ggatgcccgcagggtgtttgacggaatg 428
             ||||||||| ||||||||||| ||||||
Sbjct: 81903 ggatgcccggagggtgtttgatggaatg 81876



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>dbj|AK106855.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-B07, full
           insert sequence
          Length = 1679

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 405 gcccgcagggtgtttgacggaatg 428
           |||||||||||||| |||||||||
Sbjct: 189 gcccgcagggtgttcgacggaatg 212



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>dbj|AK071947.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088P03, full
           insert sequence
          Length = 2739

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 401 ggatgcccgcagggtgtttgacggaatg 428
           ||||||||| ||||||||||| ||||||
Sbjct: 738 ggatgcccggagggtgtttgatggaatg 765



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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    ccggctcggccgcctgcggg 216
              ||||||||||||||||||||
Sbjct: 506150 ccggctcggccgcctgcggg 506131



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>gb|L33919.1|USMMYP1A Corn smut fungus (clone pM1-1) myp1 gene, complete cds
          Length = 6940

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 255 atcttcgcctggaacaccat 274
           ||||||||||||||||||||
Sbjct: 158 atcttcgcctggaacaccat 139



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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 209     cctgcgggaggcccgggagg 228
               ||||||||||||||||||||
Sbjct: 2627042 cctgcgggaggcccgggagg 2627023


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,404,439
Number of Sequences: 3902068
Number of extensions: 2404439
Number of successful extensions: 65816
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65173
Number of HSP's gapped (non-prelim): 639
length of query: 489
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 467
effective length of database: 17,147,199,772
effective search space: 8007742293524
effective search space used: 8007742293524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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