Clone Name | bastl04f09 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 238 bits (120), Expect = 1e-59 Identities = 252/296 (85%) Strand = Plus / Plus Query: 192 ctcgcccggctcggccgcctgcgggaggcccgggaggtgttcgacgccatgccacaccgc 251 |||| ||| ||||||||| || |||||||| |||||||||||||||| ||||| | ||| Sbjct: 2812364 ctcggccgcctcggccgcgtgggggaggccagggaggtgttcgacgcgatgccgcgccgg 2812423 Query: 252 agcatcttcgcctggaacaccatgatctccgcctactgcaacaatgggatgcccgaggac 311 |||| ||||||||||| |||||||||| ||||||||| |||| ||||||||||| | | Sbjct: 2812424 gacatcatcgcctggaactccatgatctctgcctactgccacaacgggatgcccgacgcc 2812483 Query: 312 gcgaaagccctcgtggatgccatctccggagggaacgtgcgcacgagcaccatcctgctg 371 |||| | |||| || ||||||||||| |||||| |||||||| || ||||||| ||| Sbjct: 2812484 gcgagggacctctacgacgccatctccggcgggaacatgcgcacgggcgccatcctcctg 2812543 Query: 372 tcggggtatgcccgcctcggccgcgtgctggatgcccgcagggtgtttgacggaatgctc 431 ||||| || | |||||||||||||||||| || || ||||||||||| || ||||||||| Sbjct: 2812544 tcgggctacggccgcctcggccgcgtgctcgaggctcgcagggtgttcgatggaatgctc 2812603 Query: 432 gagcggaacaccatagcatggaacgccatggtcagctgctatgcccggaacgggga 487 |||||||||||| | || |||||||||||| |||||||||||| || ||||||||| Sbjct: 2812604 gagcggaacaccgtggcgtggaacgccatgatcagctgctatgtccagaacgggga 2812659
>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0050G13 Length = 150685 Score = 238 bits (120), Expect = 1e-59 Identities = 252/296 (85%) Strand = Plus / Plus Query: 192 ctcgcccggctcggccgcctgcgggaggcccgggaggtgttcgacgccatgccacaccgc 251 |||| ||| ||||||||| || |||||||| |||||||||||||||| ||||| | ||| Sbjct: 80592 ctcggccgcctcggccgcgtgggggaggccagggaggtgttcgacgcgatgccgcgccgg 80651 Query: 252 agcatcttcgcctggaacaccatgatctccgcctactgcaacaatgggatgcccgaggac 311 |||| ||||||||||| |||||||||| ||||||||| |||| ||||||||||| | | Sbjct: 80652 gacatcatcgcctggaactccatgatctctgcctactgccacaacgggatgcccgacgcc 80711 Query: 312 gcgaaagccctcgtggatgccatctccggagggaacgtgcgcacgagcaccatcctgctg 371 |||| | |||| || ||||||||||| |||||| |||||||| || ||||||| ||| Sbjct: 80712 gcgagggacctctacgacgccatctccggcgggaacatgcgcacgggcgccatcctcctg 80771 Query: 372 tcggggtatgcccgcctcggccgcgtgctggatgcccgcagggtgtttgacggaatgctc 431 ||||| || | |||||||||||||||||| || || ||||||||||| || ||||||||| Sbjct: 80772 tcgggctacggccgcctcggccgcgtgctcgaggctcgcagggtgttcgatggaatgctc 80831 Query: 432 gagcggaacaccatagcatggaacgccatggtcagctgctatgcccggaacgggga 487 |||||||||||| | || |||||||||||| |||||||||||| || ||||||||| Sbjct: 80832 gagcggaacaccgtggcgtggaacgccatgatcagctgctatgtccagaacgggga 80887
>ref|NM_197801.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0057L21.17), mRNA Length = 1590 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 225 gaggtgttcgacgccatgccacaccgc 251 |||||||||| |||||||||||||||| Sbjct: 442 gaggtgttcgccgccatgccacaccgc 468
>gb|AC087599.14| Oryza sativa chromosome 10 BAC OSJNBa0057L21 genomic sequence, complete sequence Length = 183046 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 225 gaggtgttcgacgccatgccacaccgc 251 |||||||||| |||||||||||||||| Sbjct: 60425 gaggtgttcgccgccatgccacaccgc 60399
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 225 gaggtgttcgacgccatgccacaccgc 251 |||||||||| |||||||||||||||| Sbjct: 21947896 gaggtgttcgccgccatgccacaccgc 21947922
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 225 gaggtgttcgacgccatgccacaccgc 251 |||||||||| |||||||||||||||| Sbjct: 21959559 gaggtgttcgccgccatgccacaccgc 21959585
>ref|XM_482079.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2405 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Plus Query: 390 ggccgcgtgctggatgcccgcagggtgtttgacggaatgctcgagcggaacac 442 ||||||||| ||||||||| ||||||||| ||||||| ||||||||||| Sbjct: 639 ggccgcgtgagggatgcccgacaggtgtttgatggaatgccagagcggaacac 691
>ref|NM_190164.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1647 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 408 cgcagggtgtttgacggaatgctcgagcggaac 440 ||||||||||| ||||||||||| || |||||| Sbjct: 328 cgcagggtgttcgacggaatgctggaccggaac 360
>ref|XM_844530.1| PREDICTED: Canis familiaris similar to growth arrest-specific 6 (LOC607745), mRNA Length = 2307 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 215 ggaggcccgggaggtgttcga 235 ||||||||||||||||||||| Sbjct: 210 ggaggcccgggaggtgttcga 230
>gb|AC125782.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0095P22, complete sequence Length = 162766 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 ggaggtgttcgacgccatgcc 244 ||||||||||||||||||||| Sbjct: 121144 ggaggtgttcgacgccatgcc 121164 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 ggaggtgttcgacgccatgcc 244 ||||||||||||||||||||| Sbjct: 112019 ggaggtgttcgacgccatgcc 112039 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 ggaggtgttcgacgccatgcc 244 ||||||||||||||||||||| Sbjct: 105923 ggaggtgttcgacgccatgcc 105943 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 ggaggtgttcgacgccatgcc 244 ||||||||||||||||||||| Sbjct: 99827 ggaggtgttcgacgccatgcc 99847
>gb|AC145349.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0096I10, complete sequence Length = 171946 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 ggaggtgttcgacgccatgcc 244 ||||||||||||||||||||| Sbjct: 110271 ggaggtgttcgacgccatgcc 110251 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 ggaggtgttcgacgccatgcc 244 ||||||||||||||||||||| Sbjct: 104175 ggaggtgttcgacgccatgcc 104155 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 ggaggtgttcgacgccatgcc 244 ||||||||||||||||||||| Sbjct: 98079 ggaggtgttcgacgccatgcc 98059 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 ggaggtgttcgacgccatgcc 244 ||||||||||||||||||||| Sbjct: 88954 ggaggtgttcgacgccatgcc 88934
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 ggaggtgttcgacgccatgcc 244 ||||||||||||||||||||| Sbjct: 24320035 ggaggtgttcgacgccatgcc 24320055 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 ggaggtgttcgacgccatgcc 244 ||||||||||||||||||||| Sbjct: 24310910 ggaggtgttcgacgccatgcc 24310930 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 ggaggtgttcgacgccatgcc 244 ||||||||||||||||||||| Sbjct: 24304814 ggaggtgttcgacgccatgcc 24304834 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 ggaggtgttcgacgccatgcc 244 ||||||||||||||||||||| Sbjct: 24298718 ggaggtgttcgacgccatgcc 24298738
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Plus Query: 390 ggccgcgtgctggatgcccgcagggtgtttgacggaatgctcgagcggaacac 442 ||||||||| ||||||||| ||||||||| ||||||| ||||||||||| Sbjct: 17622101 ggccgcgtgagggatgcccgacaggtgtttgatggaatgccagagcggaacac 17622153 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 401 ggatgcccgcagggtgtttgacggaatg 428 ||||||||| ||||||||||| |||||| Sbjct: 654525 ggatgcccggagggtgtttgatggaatg 654498
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 408 cgcagggtgtttgacggaatgctcgagcggaac 440 ||||||||||| ||||||||||| || |||||| Sbjct: 38221270 cgcagggtgttcgacggaatgctggaccggaac 38221238
>dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0018C10 Length = 200183 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 408 cgcagggtgtttgacggaatgctcgagcggaac 440 ||||||||||| ||||||||||| || |||||| Sbjct: 140504 cgcagggtgttcgacggaatgctggaccggaac 140472
>dbj|AP004397.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0436B06 Length = 148947 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Plus Query: 390 ggccgcgtgctggatgcccgcagggtgtttgacggaatgctcgagcggaacac 442 ||||||||| ||||||||| ||||||||| ||||||| ||||||||||| Sbjct: 98751 ggccgcgtgagggatgcccgacaggtgtttgatggaatgccagagcggaacac 98803
>dbj|AP003962.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1705_C03 Length = 118339 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Plus Query: 390 ggccgcgtgctggatgcccgcagggtgtttgacggaatgctcgagcggaacac 442 ||||||||| ||||||||| ||||||||| ||||||| ||||||||||| Sbjct: 7490 ggccgcgtgagggatgcccgacaggtgtttgatggaatgccagagcggaacac 7542
>dbj|AK119762.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-G08, full insert sequence Length = 1638 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 ggaggtgttcgacgccatgcc 244 ||||||||||||||||||||| Sbjct: 1007 ggaggtgttcgacgccatgcc 987
>dbj|AK106745.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-B11, full insert sequence Length = 1614 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 ggaggtgttcgacgccatgcc 244 ||||||||||||||||||||| Sbjct: 980 ggaggtgttcgacgccatgcc 960
>dbj|AK101199.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030L22, full insert sequence Length = 2405 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Plus Query: 390 ggccgcgtgctggatgcccgcagggtgtttgacggaatgctcgagcggaacac 442 ||||||||| ||||||||| ||||||||| ||||||| ||||||||||| Sbjct: 639 ggccgcgtgagggatgcccgacaggtgtttgatggaatgccagagcggaacac 691
>dbj|AK069671.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027J18, full insert sequence Length = 2017 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 408 cgcagggtgtttgacggaatgctcgagcggaac 440 ||||||||||| ||||||||||| || |||||| Sbjct: 431 cgcagggtgttcgacggaatgctggaccggaac 463
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 ggaggtgttcgacgccatgcc 244 ||||||||||||||||||||| Sbjct: 24631704 ggaggtgttcgacgccatgcc 24631724 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 ggaggtgttcgacgccatgcc 244 ||||||||||||||||||||| Sbjct: 24622579 ggaggtgttcgacgccatgcc 24622599 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 ggaggtgttcgacgccatgcc 244 ||||||||||||||||||||| Sbjct: 24616483 ggaggtgttcgacgccatgcc 24616503 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 ggaggtgttcgacgccatgcc 244 ||||||||||||||||||||| Sbjct: 24610387 ggaggtgttcgacgccatgcc 24610407
>ref|XM_479749.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2738 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 401 ggatgcccgcagggtgtttgacggaatg 428 ||||||||| ||||||||||| |||||| Sbjct: 738 ggatgcccggagggtgtttgatggaatg 765
>ref|NM_186040.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1679 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 405 gcccgcagggtgtttgacggaatg 428 |||||||||||||| ||||||||| Sbjct: 189 gcccgcagggtgttcgacggaatg 212
>gb|AC175200.2| Sporobolomyces roseus clone JGIBAIF-29B10, complete sequence Length = 40413 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 ccgtatccaggagctcgccc 198 |||||||||||||||||||| Sbjct: 33786 ccgtatccaggagctcgccc 33767
>ref|XM_756895.1| Ustilago maydis 521 hypothetical protein (UM05841.1) partial mRNA Length = 1515 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 atcttcgcctggaacaccat 274 |||||||||||||||||||| Sbjct: 1410 atcttcgcctggaacaccat 1391
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 ctcggccgcgtgctggatgc 406 |||||||||||||||||||| Sbjct: 4674376 ctcggccgcgtgctggatgc 4674395
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 405 gcccgcagggtgtttgacggaatg 428 |||||||||||||| ||||||||| Sbjct: 27895537 gcccgcagggtgttcgacggaatg 27895560
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 tcgcccggctcggccgcctgcggg 216 |||||||| ||||||||||||||| Sbjct: 2924250 tcgcccgggtcggccgcctgcggg 2924227
>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E03 Length = 159980 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 405 gcccgcagggtgtttgacggaatg 428 |||||||||||||| ||||||||| Sbjct: 58895 gcccgcagggtgttcgacggaatg 58918
>dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498H04 Length = 151046 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 401 ggatgcccgcagggtgtttgacggaatg 428 ||||||||| ||||||||||| |||||| Sbjct: 81903 ggatgcccggagggtgtttgatggaatg 81876
>dbj|AK106855.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-B07, full insert sequence Length = 1679 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 405 gcccgcagggtgtttgacggaatg 428 |||||||||||||| ||||||||| Sbjct: 189 gcccgcagggtgttcgacggaatg 212
>dbj|AK071947.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088P03, full insert sequence Length = 2739 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 401 ggatgcccgcagggtgtttgacggaatg 428 ||||||||| ||||||||||| |||||| Sbjct: 738 ggatgcccggagggtgtttgatggaatg 765
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ccggctcggccgcctgcggg 216 |||||||||||||||||||| Sbjct: 506150 ccggctcggccgcctgcggg 506131
>gb|L33919.1|USMMYP1A Corn smut fungus (clone pM1-1) myp1 gene, complete cds Length = 6940 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 atcttcgcctggaacaccat 274 |||||||||||||||||||| Sbjct: 158 atcttcgcctggaacaccat 139
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 cctgcgggaggcccgggagg 228 |||||||||||||||||||| Sbjct: 2627042 cctgcgggaggcccgggagg 2627023 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,404,439 Number of Sequences: 3902068 Number of extensions: 2404439 Number of successful extensions: 65816 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65173 Number of HSP's gapped (non-prelim): 639 length of query: 489 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 467 effective length of database: 17,147,199,772 effective search space: 8007742293524 effective search space used: 8007742293524 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)