Clone Information

BLAST Search Result

Clone Name	bastl04f08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein ...	33	0.34
2	PTHB1_MOUSE (Q811G0) Protein PTHB1 (Parathyroid hormone-responsi...	32	0.76
3	PTHB1_HUMAN (Q3SYG4) Protein PTHB1 (Parathyroid hormone-responsi...	32	0.99
4	IF2_BORPE (Q7VYR2) Translation initiation factor IF-2	31	1.7
5	IF2_BORBR (Q7WHG2) Translation initiation factor IF-2	31	1.7
6	S39A5_HUMAN (Q6ZMH5) Zinc transporter ZIP5 precursor (Solute car...	31	1.7
7	ZYX_HUMAN (Q15942) Zyxin (Zyxin-2)	31	1.7
8	ATBF1_HUMAN (Q15911) Alpha-fetoprotein enhancer-binding protein ...	31	1.7
9	EWS_MOUSE (Q61545) RNA-binding protein EWS	30	2.2
10	VGLH_PRVRI (P27593) Glycoprotein H precursor	30	2.2
11	VGLH_PRVN3 (Q00660) Glycoprotein H precursor	30	2.2
12	VGLH_PRVKA (P27416) Glycoprotein H precursor	30	2.2
13	SYNJ2_HUMAN (O15056) Synaptojanin-2 (EC 3.1.3.36) (Synaptic inos...	30	2.2
14	SMCA4_HUMAN (P51532) Probable global transcription activator SNF...	30	2.2
15	CD2_MOUSE (P08920) T-cell surface antigen CD2 precursor (T-cell ...	30	2.2
16	HUNB_MUSDO (Q01778) Protein hunchback	30	2.9
17	SYN3_RAT (O70441) Synapsin-3 (Synapsin III)	30	2.9
18	SYN3_MOUSE (Q8JZP2) Synapsin-3 (Synapsin III)	30	2.9
19	CAC1H_HUMAN (O95180) Voltage-dependent T-type calcium channel al...	30	2.9
20	IE63_EBV (Q04360) Transcriptional regulator IE63 homolog (Diffus...	30	2.9
21	MK15_MOUSE (Q80Y86) Mitogen-activated protein kinase 15 (EC 2.7....	30	2.9
22	PRPC_HUMAN (P02810) Salivary acidic proline-rich phosphoprotein ...	30	2.9
23	MIS_HUMAN (P03971) Muellerian-inhibiting factor precursor (MIS) ...	30	3.8
24	VCY1_HUMAN (O14598) Testis-specific basic protein Y 1 (Variably ...	30	3.8
25	PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor	30	3.8
26	Y525_PSEAE (Q51484) Hypothetical protein PA0525	26	3.8
27	CUTL1_CANFA (P39881) Homeobox protein cut-like 1 (CCAAT displace...	25	4.7
28	SYD_PROMA (Q7V9I1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar...	29	4.9
29	RNB_HHV11 (P04487) RNA-binding protein (Vmw21)	29	4.9
30	MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-...	29	4.9
31	PGK_MYCAV (O32848) Phosphoglycerate kinase (EC 2.7.2.3) (Fragment)	29	4.9
32	CAD22_RAT (Q63315) Cadherin-22 precursor (Pituitary and brain ca...	29	4.9
33	CAD22_MOUSE (Q9WTP5) Cadherin-22 precursor (Pituitary and brain ...	29	4.9
34	PMP3_MOUSE (P05143) Proline-rich protein MP-3 (Fragment)	29	4.9
35	ONEC_DROME (Q9NJB5) Homeobox protein onecut	29	4.9
36	BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-assoc...	29	4.9
37	YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon ...	29	4.9
38	YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6	29	6.4
39	TTLL7_HUMAN (Q6ZT98) Tubulin--tyrosine ligase-like protein 7 (Pr...	29	6.4
40	PHLB1_MOUSE (Q6PDH0) Pleckstrin homology-like domain family B me...	29	6.4
41	DNAK_NATPD (Q3IUI0) Chaperone protein dnaK (Heat shock protein 7...	29	6.4
42	ANMX_CRILO (Q99MI9) Protein arginine N-methyltransferase (EC 2.1...	29	6.4
43	GLI1_MOUSE (P47806) Zinc finger protein GLI1 (Glioma-associated ...	29	6.4
44	YRR2_CAEEL (Q09345) Hypothetical protein R144.2	29	6.4
45	PTC1_MOUSE (Q61115) Protein patched homolog 1 (PTC1) (PTC)	29	6.4
46	ANM7_MOUSE (Q922X9) Protein arginine N-methyltransferase 7 (EC 2...	29	6.4
47	CD2L5_MOUSE (Q69ZA1) Cell division cycle 2-like protein kinase 5...	29	6.4
48	WDR46_CANFA (Q5TJE7) WD-repeat protein 46	26	8.0
49	IF2_COREF (Q8FPA7) Translation initiation factor IF-2	28	8.4
50	ETV5_HUMAN (P41161) ETS translocation variant 5 (Ets-related pro...	28	8.4
51	TM16B_HUMAN (Q9NQ90) Transmembrane protein 16B	28	8.4
52	MARCS_BOVIN (P12624) Myristoylated alanine-rich C-kinase substra...	28	8.4
53	IF2_CORDI (Q6NGN2) Translation initiation factor IF-2	28	8.4
54	JHD1A_XENTR (Q5U263) JmjC domain-containing histone demethylatio...	28	8.4
55	DNAK_SYMTH (Q67S54) Chaperone protein dnaK (Heat shock protein 7...	28	8.4
56	DNAE2_RHILO (Q98E34) Error-prone DNA polymerase (EC 2.7.7.7)	28	8.4
57	ANKY1_HUMAN (Q9P2S6) Ankyrin repeat and MYND domain-containing p...	28	8.4

>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding|
            factor) (AT-binding transcription factor 1)
          Length = 3726

 Score = 33.1 bits (74), Expect = 0.34
 Identities = 20/66 (30%), Positives = 27/66 (40%)
 Frame = -2

Query: 359  CFADPSR*PETQDRQSHHMQLPPPRHNVDLPRSTGAPRGGHSPRSGRDRRPSAANRSHSL 180
            CF DPS    T    +H    PPP         + AP    SP + R   P   +R+ + 
Sbjct: 3600 CFPDPST-ASTSQSAAHSNDSPPP--------PSAAPSSSASPHASRKSWPPVGSRASAA 3650

Query: 179  RGPSSP 162
            + PS P
Sbjct: 3651 KPPSFP 3656

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>PTHB1_MOUSE (Q811G0) Protein PTHB1 (Parathyroid hormone-responsive B1 gene|
           protein homolog)
          Length = 885

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 370 SAVCALQTPADDQKHKIAKVTTCSFLLPVIMLTCPGPPERPAA 242
           +AV +   P D     I +V  C F LP+ ++  PG P + A+
Sbjct: 502 NAVVSYSRPTDRNPDGIPRVVQCKFRLPLKLICLPGQPSKTAS 544

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>PTHB1_HUMAN (Q3SYG4) Protein PTHB1 (Parathyroid hormone-responsive B1 gene|
           protein) (Bardet-Biedl syndrome 9 protein)
          Length = 887

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 370 SAVCALQTPADDQKHKIAKVTTCSFLLPVIMLTCPGPPERPAA 242
           +AV +   P D     I +V  C F LP+ ++  PG P + A+
Sbjct: 503 NAVVSYSRPTDRNPDGIPRVIQCKFRLPLKLICLPGQPSKTAS 545

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>IF2_BORPE (Q7VYR2) Translation initiation factor IF-2|
          Length = 997

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -3

Query: 238 IRRDPAEIDXXXXXXXXXASGVRAAPSRASKCSGEAPQEEAEPTTVTAVRSEPA 77
           ++RDPAE+                A +RA + + EA   EA P     VR+EPA
Sbjct: 95  VKRDPAEL------------AAEQAAARAEEAAAEAVPAEAAPAPAEPVRAEPA 136

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>IF2_BORBR (Q7WHG2) Translation initiation factor IF-2|
          Length = 997

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -3

Query: 238 IRRDPAEIDXXXXXXXXXASGVRAAPSRASKCSGEAPQEEAEPTTVTAVRSEPA 77
           ++RDPAE+                A +RA + + EA   EA P     VR+EPA
Sbjct: 95  VKRDPAEL------------AAEQAAARAEEAAAEAVPAEAAPAPAEPVRAEPA 136

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>S39A5_HUMAN (Q6ZMH5) Zinc transporter ZIP5 precursor (Solute carrier family 39|
           member 5)
          Length = 539

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 284 HNVDLPRSTGAPRGGHSPRSGRDRRPSAANRSHSLRGPSSPE 159
           H++ L R  G   G H P +GR   P+A N +H    P +PE
Sbjct: 62  HSLGLGRVQGLRLGQHGPLTGRAASPAADNSTHR---PQNPE 100

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>ZYX_HUMAN (Q15942) Zyxin (Zyxin-2)|
          Length = 572

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 21/69 (30%), Positives = 28/69 (40%)
 Frame = -2

Query: 455 PIGSEVPPENRGALGRPTVNQVAAGGLEIRCLCFADPSR*PETQDRQSHHMQLPPPRHNV 276
           P GS   P  +  LG P       G  +     +A     P  Q++Q     +PPP  N 
Sbjct: 285 PGGSGSQPNQK--LGHPEALSAGTGSPQPPSFTYAQQREKPRVQEKQH---PVPPPAQNQ 339

Query: 275 DLPRSTGAP 249
           +  RS GAP
Sbjct: 340 NQVRSPGAP 348

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>ATBF1_HUMAN (Q15911) Alpha-fetoprotein enhancer-binding protein (AT motif-binding|
            factor) (AT-binding transcription factor 1)
          Length = 3703

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 21/66 (31%), Positives = 27/66 (40%)
 Frame = -2

Query: 359  CFADPSR*PETQDRQSHHMQLPPPRHNVDLPRSTGAPRGGHSPRSGRDRRPSAANRSHSL 180
            CF DPS    T    +H    PP       P S  AP    SP + R   P   +R+ + 
Sbjct: 3577 CFPDPST-ASTSQSAAHSNDSPP-------PPSAAAPSSA-SPHASRKSWPQVVSRASAA 3627

Query: 179  RGPSSP 162
            + PS P
Sbjct: 3628 KPPSFP 3633

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>EWS_MOUSE (Q61545) RNA-binding protein EWS|
          Length = 655

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +2

Query: 137 SGAFAGPARGCSDPGGCGSGWRRRGVDLGRISANARRGALRWTGAGQ 277
           SG F+GP    S  G    G  R G D G +S   R G     GAG+
Sbjct: 282 SGGFSGPGENRSLSGPDNRGRGRGGFDRGGMSRGGRGGGRGGLGAGE 328

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>VGLH_PRVRI (P27593) Glycoprotein H precursor|
          Length = 686

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 328 VSGHLLGSAKHKQRISSPPAATWLTVGLPR-APRFSGGTS 444
           + GHLLG      ++  PP + W  V  PR  PR SG  S
Sbjct: 81  IRGHLLGRYLVSYQVVPPPVSAWYFVQRPRERPRLSGPPS 120

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>VGLH_PRVN3 (Q00660) Glycoprotein H precursor|
          Length = 686

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 328 VSGHLLGSAKHKQRISSPPAATWLTVGLPR-APRFSGGTS 444
           + GHLLG      ++  PP + W  V  PR  PR SG  S
Sbjct: 81  IRGHLLGRYLVSYQVVPPPVSAWYFVQRPRERPRLSGPPS 120

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>VGLH_PRVKA (P27416) Glycoprotein H precursor|
          Length = 686

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 328 VSGHLLGSAKHKQRISSPPAATWLTVGLPR-APRFSGGTS 444
           + GHLLG      ++  PP + W  V  PR  PR SG  S
Sbjct: 81  IRGHLLGRYLVSYQVVPPPVSAWYFVQRPRERPRLSGPPS 120

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>SYNJ2_HUMAN (O15056) Synaptojanin-2 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 2)
          Length = 1496

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 26/99 (26%), Positives = 40/99 (40%)
 Frame = -2

Query: 455  PIGSEVPPENRGALGRPTVNQVAAGGLEIRCLCFADPSR*PETQDRQSHHMQLPPPRHNV 276
            P+    PP    A+ +PT+ +               P    E  ++Q+ H  + PP  +V
Sbjct: 1225 PLLPRRPPPRVPAIKKPTLRRTGK------------PLSPEEQFEQQTVHFTIGPPETSV 1272

Query: 275  DLPRSTGAPRGGHSPRSGRDRRPSAANRSHSLRGPSSPE 159
            + P    APR    P+  R  +P  A    S R P+S E
Sbjct: 1273 EAPPVVTAPRVPPVPKP-RTFQPGKAAERPSHRKPASDE 1310

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>SMCA4_HUMAN (P51532) Probable global transcription activator SNF2L4 (EC|
           3.6.1.-) (ATP-dependent helicase SMARCA4) (SNF2-beta)
           (BRG-1 protein) (Mitotic growth and transcription
           activator) (Brahma protein homolog 1) (SWI/SNF-related
           matrix-associated actin
          Length = 1647

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = -2

Query: 299 LPPPRHNVDLPRSTGAPRGGHSPRSGRDRRPSAANRSHSLRGPSSPEPG 153
           LPPP  +   P     P  G  P  G    P   +R H + GP+ P PG
Sbjct: 220 LPPPSVSATGP----GPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPG 264

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>CD2_MOUSE (P08920) T-cell surface antigen CD2 precursor (T-cell surface|
           antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (Lymphocyte
           antigen Ly-37)
          Length = 344

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -2

Query: 296 PPPRHNVDLPRSTGAPRGGHSPRSGRDRR--PSAANRSHSLRGPSSPEPGQQ 147
           PPP H++  P     P  GH  R  + ++  P +  + H  +GP  P P  Q
Sbjct: 277 PPPGHHLQTPGHRPLP-PGHRTREHQQKKRPPPSGTQIHQQKGPPLPRPRVQ 327

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>HUNB_MUSDO (Q01778) Protein hunchback|
          Length = 817

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 26/94 (27%), Positives = 37/94 (39%)
 Frame = -2

Query: 446 SEVPPENRGALGRPTVNQVAAGGLEIRCLCFADPSR*PETQDRQSHHMQLPPPRHNVDLP 267
           +E+PP     +    VN VAAG         AD S   E+ +   HH    P   N    
Sbjct: 678 NEMPPTTSSPIHPSQVNGVAAGA--------ADHSSADESMETGHHHHHHNPTTANTS-- 727

Query: 266 RSTGAPRGGHSPRSGRDRRPSAANRSHSLRGPSS 165
            S+ A   G+S  S      S +N S +   P++
Sbjct: 728 ASSTASSSGNSSNSSSTSTSSNSNSSSAGNSPNT 761

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>SYN3_RAT (O70441) Synapsin-3 (Synapsin III)|
          Length = 579

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = -2

Query: 296 PPPRHNVDLPRSTGAPRGGHSPRSGRDRRPSAANRSHSLRGPSSPEPG 153
           P PR     P   G PR   SP+  R R PS    S   + P SP+ G
Sbjct: 431 PQPR-----PPPQGGPRQAQSPQPPRSRSPSQQRLSPQGQQPVSPQSG 473

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>SYN3_MOUSE (Q8JZP2) Synapsin-3 (Synapsin III)|
          Length = 579

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = -2

Query: 296 PPPRHNVDLPRSTGAPRGGHSPRSGRDRRPSAANRSHSLRGPSSPEPG 153
           P PR     P   G PR   SP+  R R PS    S   + P SP+ G
Sbjct: 431 PQPR-----PPPQGGPRQAQSPQPPRSRSPSQQRLSPQGQQPVSPQSG 473

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>CAC1H_HUMAN (O95180) Voltage-dependent T-type calcium channel alpha-1H subunit|
            (Voltage-gated calcium channel alpha subunit Cav3.2)
            (Low-voltage-activated calcium channel alpha1 3.2
            subunit)
          Length = 2353

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 20/79 (25%), Positives = 25/79 (31%), Gaps = 11/79 (13%)
 Frame = -3

Query: 265  GPPERPAAGIRR-----------DPAEIDXXXXXXXXXASGVRAAPSRASKCSGEAPQEE 119
            GP   PA G RR           +P   D           G      R   C     ++ 
Sbjct: 2172 GPEAEPALGARRKKKMSPPCISVEPPAEDEGSARPSAAEGGSTTLRRRTPSCEATPHRDS 2231

Query: 118  AEPTTVTAVRSEPARKGGR 62
             EPT  +    +PA KG R
Sbjct: 2232 LEPTEGSGAGGDPAAKGER 2250

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>IE63_EBV (Q04360) Transcriptional regulator IE63 homolog (Diffuse early|
           antigen)
          Length = 438

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = -2

Query: 329 TQDRQSHHMQLPPPRHNVDLPRSTGAPRGGHSPRSGRDRRPSAANRSHS 183
           T +       LPP       PR+   PR   SPR+ R  R +   RS S
Sbjct: 96  TDESYGKRRHLPPGARAPRAPRAPRVPRAPRSPRAPRSNRATRGPRSES 144

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>MK15_MOUSE (Q80Y86) Mitogen-activated protein kinase 15 (EC 2.7.11.24)|
           (Extracellular signal-regulated kinase 7)
          Length = 549

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
 Frame = -3

Query: 352 QTPADDQKHKIAKVTTCSFLLPVIMLTCPGPPERPAAGIRRDPAEIDXXXXXXXXXASGV 173
           ++P  D +H   +  +     P+  L  PG  ERP     + P+             + V
Sbjct: 401 RSPGHDPEHVEVRRQSSD---PLFQLPPPGRGERPPGATGQPPS-------APSGVKTQV 450

Query: 172 RA-APSRASKCSGEAPQEEAEPTTVTAVRSEPARKGG 65
           RA APS  S       Q EA+      +RS+PAR GG
Sbjct: 451 RAMAPSLTS-------QAEAQAANQALIRSDPARGGG 480

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>PRPC_HUMAN (P02810) Salivary acidic proline-rich phosphoprotein 1/2 precursor|
           (PRP-1/PRP-2) (Parotid proline-rich protein 1/2)
           (Pr1/Pr2) (Protein C) (Parotid acidic protein) (Pa)
           (Parotid isoelectric focusing variant protein) (PIF-S)
           (Parotid double-band
          Length = 166

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 20/66 (30%), Positives = 26/66 (39%)
 Frame = -2

Query: 347 PSR*PETQDRQSHHMQLPPPRHNVDLPRSTGAPRGGHSPRSGRDRRPSAANRSHSLRGPS 168
           P   P+   +Q  H   PPP       R  G P+ G  PR  R R      +    +GP 
Sbjct: 87  PQGKPQGPPQQGGH---PPPPQG----RPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPP 139

Query: 167 SPEPGQ 150
            P PG+
Sbjct: 140 PPPPGK 145

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>MIS_HUMAN (P03971) Muellerian-inhibiting factor precursor (MIS)|
           (Anti-Muellerian hormone) (AMH) (Mullerian-inhibiting
           substance)
          Length = 560

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 274 TCPGPPERPAAGIRRDPAEIDXXXXXXXXXASGVRAAPSRAS 149
           T P PP RP+A +   P   D            +R  P+RAS
Sbjct: 268 TVPFPPPRPSAELEESPPSADPFLETLTRLVRALRVPPARAS 309

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>VCY1_HUMAN (O14598) Testis-specific basic protein Y 1 (Variably charged|
           protein Y)
          Length = 125

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = -2

Query: 347 PSR*PETQDRQSHHMQLP--PPRHNVDLPRSTGAPRGGHSPRSGRDRRPSAANRSHSLRG 174
           P++  ET  R+S     P  P +    +     A RGG   + G   + +A     +  G
Sbjct: 11  PAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMAAVTAPEAESG 70

Query: 173 PSSPEPGQQ 147
           P++P P  Q
Sbjct: 71  PAAPGPSDQ 79

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>PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor|
          Length = 261

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 26/95 (27%), Positives = 32/95 (33%)
 Frame = -2

Query: 437 PPENRGALGRPTVNQVAAGGLEIRCLCFADPSR*PETQDRQSHHMQLPPPRHNVDLPRST 258
           PP   G   RP       GG ++R      P   P     Q    Q PPP          
Sbjct: 122 PPPPGGPQPRPPQGPPPPGGPQLR-----PPQGPPPPAGPQPRPPQGPPPPAGPQPRPPQ 176

Query: 257 GAPRGGHSPRSGRDRRPSAANRSHSLRGPSSPEPG 153
           G P  G  PR  +   P+   +    +GP  P PG
Sbjct: 177 GPPTTGPQPRPTQGPPPTGGPQQQPPQGP--PPPG 209

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>Y525_PSEAE (Q51484) Hypothetical protein PA0525|
          Length = 612

 Score = 26.2 bits (56), Expect(2) = 3.8
 Identities = 24/71 (33%), Positives = 32/71 (45%)
 Frame = +1

Query: 52  ATFISPLSLPARSGRR*RWWALPLLEALLRSICWPGSGLLGPRRLWERLAAEGRRSRPDL 231
           A    PL   A+  +R   WA  LL+A      +P    L PR  + RL A   R RP L
Sbjct: 117 AASAGPLRHWAQDNQR---WARQLLDA------YPA---LRPR--YARLVAAHLRQRPSL 162

Query: 232 GECPPRGAPVD 264
            +CP   A ++
Sbjct: 163 DDCPAADAELE 173



 Score = 21.9 bits (45), Expect(2) = 3.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 257 RWTGAGQHYDGEEEAA 304
           RWT +    DGEE AA
Sbjct: 208 RWTPSASAEDGEEAAA 223

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>CUTL1_CANFA (P39881) Homeobox protein cut-like 1 (CCAAT displacement protein)|
           (CDP) (Homeobox protein Clox) (Clox-1) (Fragment)
          Length = 975

 Score = 25.0 bits (53), Expect(2) = 4.7
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 178 GVRAAPSRASKCSGEAPQEEAEPTTVTAVRSEPARKGGR 62
           G  AAP+ A++     P   A+P      R   AR GGR
Sbjct: 849 GAPAAPAAAARGPSRRPGARAKPRRRRRRRRRHARGGGR 887



 Score = 22.7 bits (47), Expect(2) = 4.7
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -2

Query: 254 APRGGHSPRSGRDRRPSAANRSHSLRGPSSPEPG 153
           APR    P   R RRP         RG   P PG
Sbjct: 820 APR----PAEKRSRRPRGPGPGPGRRGGGGPAPG 849

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>SYD_PROMA (Q7V9I1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 605

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 16/36 (44%), Positives = 16/36 (44%)
 Frame = +1

Query: 124 LEALLRSICWPGSGLLGPRRLWERLAAEGRRSRPDL 231
           LEAL    C P    LG RRLWE      R    DL
Sbjct: 457 LEALHHPFCAPNQSDLGQRRLWETNLPTARAQAYDL 492

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>RNB_HHV11 (P04487) RNA-binding protein (Vmw21)|
          Length = 161

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -2

Query: 302 QLPPPRHNVDLPRSTGAPRGGHSPRSGRD-RRPSAANRSHSLRGPSSP 162
           ++P P      PR   APR    PR  RD R+P +     S R P SP
Sbjct: 95  RVPRPPREPREPRVPRAPRDPRVPRDPRDPRQPRSPREPRSPREPRSP 142

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>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding|
           protein MBD6)
          Length = 1003

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
 Frame = -2

Query: 317 QSHHMQLPPPRHNVDLPRSTGAPRGGHS----PRSGRDRRPSAANRSHSLRGPSSP 162
           ++ H  LPPP           AP   HS    P   R RRP    R    RGP +P
Sbjct: 329 KAQHPPLPPPSTLQGRRPRAQAPSASHSSSLRPSQRRPRRPPTVFRLLEGRGPQTP 384

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>PGK_MYCAV (O32848) Phosphoglycerate kinase (EC 2.7.2.3) (Fragment)|
          Length = 388

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = -2

Query: 266 RSTGAPRGGH---SPRSGRDRRPSAANRSHSLRGP 171
           R+ G  RGGH    PR G DRR   A   H +R P
Sbjct: 95  RAAGLGRGGHRRPGPRRGVDRRRRPAAGKHPVRRP 129

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>CAD22_RAT (Q63315) Cadherin-22 precursor (Pituitary and brain cadherin)|
           (PB-cadherin)
          Length = 813

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 18/32 (56%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -2

Query: 242 GHSPRSGRDRRPSAANRS--HSL-RGPSSPEP 156
           G  P  G    P AA+ S  HSL RGPSSPEP
Sbjct: 696 GGDPGGGAASPPQAASSSERHSLPRGPSSPEP 727

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>CAD22_MOUSE (Q9WTP5) Cadherin-22 precursor (Pituitary and brain cadherin)|
           (PB-cadherin)
          Length = 813

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 18/32 (56%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -2

Query: 242 GHSPRSGRDRRPSAANRS--HSL-RGPSSPEP 156
           G  P  G    P AA+ S  HSL RGPSSPEP
Sbjct: 696 GGDPGGGAASPPQAASSSERHSLPRGPSSPEP 727

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>PMP3_MOUSE (P05143) Proline-rich protein MP-3 (Fragment)|
          Length = 296

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 27/95 (28%), Positives = 33/95 (34%)
 Frame = -2

Query: 437 PPENRGALGRPTVNQVAAGGLEIRCLCFADPSR*PETQDRQSHHMQLPPPRHNVDLPRST 258
           PP   G   RPT      GG + R      P   P     Q    Q PPP        + 
Sbjct: 157 PPPPAGPHLRPTQGPPPTGGPQQRY-----PQSPPPPGGPQPRPPQGPPPPGGPHPRPTQ 211

Query: 257 GAPRGGHSPRSGRDRRPSAANRSHSLRGPSSPEPG 153
           G P  G  PR  +   P+   +    +GP  P PG
Sbjct: 212 GPPPTGPQPRPTQGPPPTGGPQQRPPQGP--PPPG 244

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>ONEC_DROME (Q9NJB5) Homeobox protein onecut|
          Length = 1081

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 364 VCALQTPADDQKHKIAKVTTCSFLLPVIMLTCPGPP 257
           +C     ADD KH  A V + +  +PV++   P PP
Sbjct: 621 ICPADWKADDWKHSNAGVVSLTADMPVVVSLTPTPP 656

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>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2160

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 31/134 (23%), Positives = 45/134 (33%), Gaps = 5/134 (3%)
 Frame = -3

Query: 454 PSAAKFLPRTVVPLADPQSTR*LPAGLKSAVCALQTPADDQKHKIAKVTTCSFLLPVIML 275
           P+A    P T  P   P   + LPA L  +  +  TP  + +                  
Sbjct: 508 PAAPPAAPSTPAP--PPAVPKELPAPLAPSPASAPTPEKEPEE----------------- 548

Query: 274 TCPGPPER--PAAGIRRDPAEIDXXXXXXXXXASGVRAAPSRA---SKCSGEAPQEEAEP 110
           +   PP +  P  G+   P  +          +    A+P      SK   E P+E   P
Sbjct: 549 SAQAPPAQCTPTPGVAAAPTLVSGGGSTSSTSSGSFEASPVEPQLPSKEGPEPPEEVPPP 608

Query: 109 TTVTAVRSEPARKG 68
           TT  A + EP   G
Sbjct: 609 TTPPAPKVEPKGDG 622

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>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556|
          Length = 348

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
 Frame = -2

Query: 296 PPPRHNVDLPRSTG----APRG----GHSPRSGRDRRPSAANRSHSLRGPSSPEPGQQ 147
           PPPR     PR       AP G      +P +  DRR  AA R  S R P++  PG+Q
Sbjct: 283 PPPRRTPGTPRPAAARARAPAGCSPARRTPSAPTDRRCRAARRG-SPRPPAARPPGRQ 339

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>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6|
          Length = 1268

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = -2

Query: 407  PTVNQVAAGGLEIRCLCFADPSR*PETQDRQSHHMQLPPPRH--NVDLPR-STGAPRGGH 237
            PT N V+A G   R     DPS       R+S  ++    R+  +V+ P  STG PRG  
Sbjct: 1164 PTNNDVSAPGYASRSHPTTDPSH----SVRRSSRIRRVLDRYGSSVEHPSTSTGTPRGST 1219

Query: 236  SPRSGRDRRPSAANRSHSLRGPS 168
            S + G+    + +  + S R PS
Sbjct: 1220 STQLGQASTRNGSRYTASGRNPS 1242

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>TTLL7_HUMAN (Q6ZT98) Tubulin--tyrosine ligase-like protein 7 (Protein NYD-SP30)|
          Length = 887

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 14/64 (21%)
 Frame = -2

Query: 314 SHHMQLPPP---RHNVDLPRSTGAPRGGHSPRSGRDR-----------RPSAANRSHSLR 177
           +H+  +  P   R +V  PRS  A     SP SG  R           RP++A+RSHSL 
Sbjct: 587 NHYKLIQQPSSIRRSVSCPRSISA----QSPSSGDTRPFSAQQMISVSRPTSASRSHSLN 642

Query: 176 GPSS 165
             SS
Sbjct: 643 RASS 646

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>PHLB1_MOUSE (Q6PDH0) Pleckstrin homology-like domain family B member 1 (Protein|
           LL5-alpha)
          Length = 1371

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -2

Query: 314 SHHMQLPPPRHNVDLPRSTGAPRGGHSPRSGRDRRPSAANRSHSLRGPSSPEPGQQML 141
           S+H+ L PP+      RS+ +PR G   + G +R PS       LRG  +  P   +L
Sbjct: 291 SYHLALQPPQSRPSGSRSSDSPRLGR--KGGHERPPSP-----GLRGLLTDSPAATVL 341

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>DNAK_NATPD (Q3IUI0) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 656

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 21/53 (39%), Positives = 23/53 (43%)
 Frame = +2

Query: 137 SGAFAGPARGCSDPGGCGSGWRRRGVDLGRISANARRGALRWTGAGQHYDGEE 295
           +GA AG A G    G  G G    G  +G        GA    GAGQ  DGEE
Sbjct: 588 AGAGAGAAGGMGGAGPGGMGGAGPG-GMGGAGPGGMGGAGPGAGAGQQGDGEE 639

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>ANMX_CRILO (Q99MI9) Protein arginine N-methyltransferase (EC 2.1.1.-)|
          Length = 729

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 233 ANARRGALRWTGAGQHYDGEEEAACGDFGDLV 328
           AN   G+L W    +HYD  +E A   + D++
Sbjct: 45  ANPTTGSLEWLEEDEHYDYHQEIARSSYADML 76

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>GLI1_MOUSE (P47806) Zinc finger protein GLI1 (Glioma-associated oncogene|
            homolog)
          Length = 1111

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = -2

Query: 335  PETQDRQSHHMQLPPPRHNVDLPRSTGAPRGGH-----SPRSGRDRRPSAANRSHSLR 177
            P  Q   SHH QLP P++    P+S   P+  H      PR G +  PS+++ +  L+
Sbjct: 843  PGPQPLFSHHPQLPQPQY----PQSGPYPQPPHGYLSTEPRLGLNFNPSSSHSTGQLK 896

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>YRR2_CAEEL (Q09345) Hypothetical protein R144.2|
          Length = 823

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = -2

Query: 335 PETQDRQSHHMQLPPPRHNVDLPRSTGAPRGGHSPRSGRDRRP 207
           P  Q  Q HH QLPPP      P   G  RG H     +D  P
Sbjct: 343 PPFQHPQQHHPQLPPP------PVHQGMGRGYHHNSPPQDPAP 379

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>PTC1_MOUSE (Q61115) Protein patched homolog 1 (PTC1) (PTC)|
          Length = 1434

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
 Frame = -2

Query: 320  RQSHHMQLPPPRHNVDLPRSTGAPRG--------GHSPRSGRDRRPSAANRSHSLRGPSS 165
            RQ    +  PPR  +  P     PR         GHS  S RDR      RSH+ R P+S
Sbjct: 1283 RQGQQPRRDPPREGLRPPPYR--PRRDAFEISTEGHSGPSNRDRSGPRGARSHNPRNPTS 1340

Query: 164  PEPGQQM 144
               G  +
Sbjct: 1341 TAMGSSV 1347

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>ANM7_MOUSE (Q922X9) Protein arginine N-methyltransferase 7 (EC 2.1.1.-)|
          Length = 692

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 233 ANARRGALRWTGAGQHYDGEEEAACGDFGDLV 328
           AN   G+L W    +HYD  +E A   + D++
Sbjct: 8   ANPTTGSLEWLEEDEHYDYHQEIARSSYADML 39

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>CD2L5_MOUSE (Q69ZA1) Cell division cycle 2-like protein kinase 5 (EC 2.7.11.22)|
           (CDC2-related protein kinase 5)
          Length = 1511

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -2

Query: 296 PPPRHNVDL--PRSTGAPRGGHSPRSGRDRRPSAANRSHSLRGPSSPEP 156
           PP  +  D   P++    +   SP  GRD  P +   S SLR   SP P
Sbjct: 296 PPKAYREDKSEPKAYRRRQRSLSPLGGRDESPVSHRASQSLRSRKSPSP 344

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>WDR46_CANFA (Q5TJE7) WD-repeat protein 46|
          Length = 612

 Score = 26.2 bits (56), Expect(2) = 8.0
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -2

Query: 335 PETQDRQSHHMQLPPPR-HNVDLPRSTGAPRGGHSPRSGRDRRPSAANRSHSLRGPSSPE 159
           P     +  + +L P R  N++LP+ +  P     P+  R++R     R  +L G   P 
Sbjct: 42  PGPPRNKKRNRELRPQRPKNINLPKKSRIPGKPQFPKKPREQRNLEPQR--NLSGAQDPF 99

Query: 158 PG 153
           PG
Sbjct: 100 PG 101



 Score = 20.8 bits (42), Expect(2) = 8.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 177 GSEQPRAGPANAPEKRLKK 121
           G++ P  GPA  PE+  +K
Sbjct: 94  GAQDPFPGPAPIPEEVARK 112

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>IF2_COREF (Q8FPA7) Translation initiation factor IF-2|
          Length = 964

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
 Frame = -2

Query: 257 GAPRGGHSPRSGRDRRPSAANRSHSLR----GPSSPEPG 153
           G PR G  PR G   RP    RS + R    GP    PG
Sbjct: 206 GGPRPGGGPRPGGAPRPQGGQRSGAPRDGQGGPRGQRPG 244

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>ETV5_HUMAN (P41161) ETS translocation variant 5 (Ets-related protein ERM)|
          Length = 510

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 22/63 (34%), Positives = 28/63 (44%)
 Frame = -2

Query: 335 PETQDRQSHHMQLPPPRHNVDLPRSTGAPRGGHSPRSGRDRRPSAANRSHSLRGPSSPEP 156
           P T    +H   L PP      P++T  P  GH+P +G  +    A   HSL     PEP
Sbjct: 137 PTTPLSPTHQNPLFPP------PQAT-LPTSGHAPAAGPVQGVGPAPAPHSL-----PEP 184

Query: 155 GQQ 147
           G Q
Sbjct: 185 GPQ 187

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>TM16B_HUMAN (Q9NQ90) Transmembrane protein 16B|
          Length = 999

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
 Frame = -2

Query: 275 DLPRSTGAPR---------GGHSPRSGRDRRPSAANRSHSLRGPSSPEPGQ 150
           D+P   G+PR         GG  P+ G+        R+  L+G S+ +PGQ
Sbjct: 4   DIPLLPGSPRRLSPQAGSRGGQGPKHGQQCLKMPGPRAPGLQGGSNRDPGQ 54

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>MARCS_BOVIN (P12624) Myristoylated alanine-rich C-kinase substrate (MARCKS)|
           (ACAMP-81)
          Length = 331

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -3

Query: 262 PPERPAAGIRRDPAEIDXXXXXXXXXASGVRAAPSRASKC--SGEAPQEEAEPTTVTAVR 89
           PP    A    +P++ +         A+G  A  +    C  +G AP+EEA P   ++  
Sbjct: 250 PPASEEAKAVEEPSKAEEKAEEAGVSAAGCEAPSAAGPGCPRAGGAPREEAAPPRASSAC 309

Query: 88  SEPARK 71
           S P+++
Sbjct: 310 SAPSQE 315

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>IF2_CORDI (Q6NGN2) Translation initiation factor IF-2|
          Length = 953

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -2

Query: 269 PRSTGAPRGGHSPRSGRDRRPSAANRSHSLRGPS--SPEPG 153
           PR  G  R G++PR G   RP          GP+  +P PG
Sbjct: 188 PRPGGGNRSGNAPRPGGGPRPGGNRPQGGQGGPAERAPRPG 228

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>JHD1A_XENTR (Q5U263) JmjC domain-containing histone demethylation protein 1A|
           (EC 1.14.11.-) (F-box/LRR-repeat protein 11) (F-box and
           leucine-rich repeat protein 11)
          Length = 1146

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 335 PETQDRQSHHMQLPPPRHNVDLPRSTGAPRGGHSPRSGRDRR 210
           P+ Q  + H M+ P  RH+   PR++G P G  +    R RR
Sbjct: 549 PKIQFTKPHTMR-PASRHSTAPPRTSGTPSGTTASSGARRRR 589

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>DNAK_SYMTH (Q67S54) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 612

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 373 KSAVCALQTPADDQKHKIAKVTTCSFLLPVIMLTCPGP 260
           K A+  L+  A+  K +++ VTT +  LP I +T  GP
Sbjct: 227 KQALQRLREAAEKAKIELSSVTTTNINLPFISMTADGP 264

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>DNAE2_RHILO (Q98E34) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 1118

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 118  PLLEALLRSICWPGSGLLGPRRL-WERLAAEGRRSRPDLGECPPR 249
            P L  LL  +   G+G  GP+ + + +     RRSRP++G  P R
Sbjct: 1055 PWLTVLLEKVS--GAGAPGPQPMGYAKEVGSDRRSRPEIGNAPAR 1097

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>ANKY1_HUMAN (Q9P2S6) Ankyrin repeat and MYND domain-containing protein 1|
           (Testis-specific ankyrin-like protein 1) (Zinc-finger
           MYND domain protein 13)
          Length = 941

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -2

Query: 302 QLPPPRHNVDLPRSTGAPRGGHSPRSGRDRRPSAANRSHSLRGPS 168
           +L PP   + LPR +G+  GGH   +G+    S  +RS SL+G S
Sbjct: 392 ELRPPPAPLLLPRVSGSHEGGHFQDTGQ-CGGSIDHRSSSLKGDS 435


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,612,527
Number of Sequences: 219361
Number of extensions: 1503014
Number of successful extensions: 5933
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 5182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5859
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result