ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl04f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1XYLA_AGRT5 (Q8U7G6) Xylose isomerase (EC 5.3.1.5) 28 4.9
2XYLA_BRUSU (Q8G204) Xylose isomerase (EC 5.3.1.5) 28 6.4
3XYLA_BRUME (Q8YFX5) Xylose isomerase (EC 5.3.1.5) 28 6.4

>XYLA_AGRT5 (Q8U7G6) Xylose isomerase (EC 5.3.1.5)|
          Length = 436

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 72  CLDGARGCGATSFSLWGGRRG 10
           C+D  +  G  ++ LWGGR G
Sbjct: 172 CMDATKTLGGANYVLWGGREG 192



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>XYLA_BRUSU (Q8G204) Xylose isomerase (EC 5.3.1.5)|
          Length = 435

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 72  CLDGARGCGATSFSLWGGRRG 10
           C+D  +  G  ++ LWGGR G
Sbjct: 172 CIDATKRLGGENYVLWGGREG 192



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>XYLA_BRUME (Q8YFX5) Xylose isomerase (EC 5.3.1.5)|
          Length = 435

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 72  CLDGARGCGATSFSLWGGRRG 10
           C+D  +  G  ++ LWGGR G
Sbjct: 172 CIDATKRLGGENYVLWGGREG 192


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.301    0.110    0.308 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,325,438
Number of Sequences: 219361
Number of extensions: 207770
Number of successful extensions: 524
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 80,573,946
effective HSP length: 52
effective length of database: 69,167,174
effective search space used: 1660012176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
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