ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl04e12 |
|---|---|
| Clone Library Name | barley_pub |
>CUL1_ARATH (Q94AH6) Cullin-1| Length = 738 Score = 194 bits (492), Expect = 1e-49 Identities = 89/106 (83%), Positives = 95/106 (89%) Frame = +2 Query: 158 ERKTVDLEEGWAFMQKGITKLKNILEGKPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQ 337 ERKT+DLE+GW +MQ GITKLK ILEG EP F SE YMMLYTTIYNMCTQKPPHDYSQQ Sbjct: 2 ERKTIDLEQGWDYMQTGITKLKRILEGLNEPAFDSEQYMMLYTTIYNMCTQKPPHDYSQQ 61 Query: 338 LYDKYRESFEEYISSMVLPSLREKHDEFMLRELVKRWSNHKAMVRW 475 LYDKYRE+FEEYI+S VLP+LREKHDEFMLREL KRWSNHK MVRW Sbjct: 62 LYDKYREAFEEYINSTVLPALREKHDEFMLRELFKRWSNHKVMVRW 107
>CUL1_DROME (Q24311) Cullin homolog 1 (Lin-19 homolog protein)| Length = 774 Score = 39.3 bits (90), Expect = 0.005 Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 13/113 (11%) Frame = +2 Query: 161 RKTVDLEEGWAFMQKGITKLKNILEGKPEPQFSSEDYMMLYTTIYNMCTQ--KPPHDYS- 331 +K V+L++ W+ + +GI ++ + E + YM YT +Y+ CT P S Sbjct: 11 QKLVNLDDIWSELVEGIMQVF-----EHEKSLTRSQYMRFYTHVYDYCTSVSAAPSGRSS 65 Query: 332 ----------QQLYDKYRESFEEYISSMVLPSLREKHDEFMLRELVKRWSNHK 460 ++LYD+ + + Y+S ++ +E +L K+W +++ Sbjct: 66 GKTGGAQLVGKKLYDRLEQFLKSYLSELLTKFKAISGEEVLLSRYTKQWKSYQ 118
>CDC53_YEAST (Q12018) Cell division control protein 53 (Cullin-A) (E3 ubiquitin| ligase complex SCF subunit CDC53) Length = 815 Score = 37.0 bits (84), Expect = 0.026 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 21/113 (18%) Frame = +2 Query: 173 DLEEGWAFMQKGITKLKNILEGKPEPQ------FSSEDYMMLYTTIYNMCTQKPPHD--- 325 DLE W F++ GI ++ + + S YM +YT IYN C K Sbjct: 10 DLEATWNFIEPGINQILGNEKNQASTSKRVYKILSPTMYMEVYTAIYNYCVNKSRSSGHF 69 Query: 326 ------------YSQQLYDKYRESFEEYISSMVLPSLREKHDEFMLRELVKRW 448 ++Y+K + + YI + ++ + E L+ VKRW Sbjct: 70 STDSRTGQSTILVGSEIYEKLKNYLKNYIL-----NFKQSNSETFLQFYVKRW 117
>CUL6_CAEEL (Q21346) Cullin-6| Length = 729 Score = 34.7 bits (78), Expect = 0.13 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 12/113 (10%) Frame = +2 Query: 170 VDLEEGWAFMQKGITKLKNILEGKPEPQFSSEDYMMLYTTIYNMCT--------QKPPHD 325 + +E W +Q G+ L S + YMMLY +YN+CT P Sbjct: 1 MSIEAVWGTLQDGLNLLYR------REHMSKKYYMMLYDAVYNICTTTTLANSNNNSPEF 54 Query: 326 YSQQLYDKYRESFEEYISSMVLPSLREK----HDEFMLRELVKRWSNHKAMVR 472 S+ LY + E YI + V+ ++R++ + +L + W N K R Sbjct: 55 ASEFLY----KQLENYIRTYVI-AIRDRISACSGDELLGKCTIEWDNFKFSTR 102
>CUL1_PONPY (Q5R4G6) Cullin-1 (CUL-1)| Length = 776 Score = 33.9 bits (76), Expect = 0.22 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 23/125 (18%) Frame = +2 Query: 155 HERKTVDLEEGWAFMQKGITKLKNILEGKPEPQFSSEDYMMLYTTIYNMCTQ-------- 310 H K + L++ W ++ GI ++ + YM LYT +YN CT Sbjct: 10 HGLKQIGLDQIWDDLRAGIQQVYT------RQSMAKSRYMELYTHVYNYCTSVHQSNQAR 63 Query: 311 ---KPPHDYSQ------------QLYDKYRESFEEYISSMVLPSLREKHDEFMLRELVKR 445 PP + +LY + +E + Y++++ L + DE +L+ ++ Sbjct: 64 GAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNL-LKDGEDLMDESVLKFYTQQ 122 Query: 446 WSNHK 460 W +++ Sbjct: 123 WEDYR 127
>CUL1_MOUSE (Q9WTX6) Cullin-1 (CUL-1)| Length = 776 Score = 33.9 bits (76), Expect = 0.22 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 23/125 (18%) Frame = +2 Query: 155 HERKTVDLEEGWAFMQKGITKLKNILEGKPEPQFSSEDYMMLYTTIYNMCTQ-------- 310 H K + L++ W ++ GI ++ + YM LYT +YN CT Sbjct: 10 HGLKQIGLDQIWDDLRAGIQQVYT------RQSMAKSRYMELYTHVYNYCTSVHQSNQAR 63 Query: 311 ---KPPHDYSQ------------QLYDKYRESFEEYISSMVLPSLREKHDEFMLRELVKR 445 PP + +LY + +E + Y++++ L + DE +L+ ++ Sbjct: 64 GAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNL-LKDGEDLMDESVLKFYTQQ 122 Query: 446 WSNHK 460 W +++ Sbjct: 123 WEDYR 127
>CUL1_HUMAN (Q13616) Cullin-1 (CUL-1)| Length = 776 Score = 33.9 bits (76), Expect = 0.22 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 23/125 (18%) Frame = +2 Query: 155 HERKTVDLEEGWAFMQKGITKLKNILEGKPEPQFSSEDYMMLYTTIYNMCTQ-------- 310 H K + L++ W ++ GI ++ + YM LYT +YN CT Sbjct: 10 HGLKQIGLDQIWDDLRAGIQQVYT------RQSMAKSRYMELYTHVYNYCTSVHQSNQAR 63 Query: 311 ---KPPHDYSQ------------QLYDKYRESFEEYISSMVLPSLREKHDEFMLRELVKR 445 PP + +LY + +E + Y++++ L + DE +L+ ++ Sbjct: 64 GAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNL-LKDGEDLMDESVLKFYTQQ 122 Query: 446 WSNHK 460 W +++ Sbjct: 123 WEDYR 127
>AMA1_PLAFH (P50491) Apical membrane antigen 1 precursor (Merozoite surface| antigen) Length = 622 Score = 32.7 bits (73), Expect = 0.50 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 6/75 (8%) Frame = +2 Query: 251 QFSSEDYMMLYTTIYNMCTQKPPHDYSQQL--YDKYRESFEEYISSMV----LPSLREKH 412 +FS+ D ++ + P Y Q L Y+K +E F+ +SM+ LP+ K Sbjct: 328 EFSANDLFECNKLVFELSASDQPKQYEQHLTDYEKIKEGFKNKNASMIKSAFLPTGAFKA 387 Query: 413 DEFMLRELVKRWSNH 457 D + R W N+ Sbjct: 388 DRYKSRGKGYNWGNY 402
>AMA1_PLAF8 (P50492) Apical membrane antigen 1 precursor (Merozoite surface| antigen) Length = 622 Score = 32.7 bits (73), Expect = 0.50 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 6/75 (8%) Frame = +2 Query: 251 QFSSEDYMMLYTTIYNMCTQKPPHDYSQQL--YDKYRESFEEYISSMV----LPSLREKH 412 +FS+ D ++ + P Y Q L Y+K +E F+ +SM+ LP+ K Sbjct: 328 EFSANDLFECNKLVFELSASDQPKQYEQHLTDYEKIKEGFKNKNASMIKSAFLPTGAFKA 387 Query: 413 DEFMLRELVKRWSNH 457 D + R W N+ Sbjct: 388 DRYKSRGKGYNWGNY 402
>CUL1_SCHPO (O13790) Cullin-1 (Cul-1) (Cell division control 53 homolog)| Length = 767 Score = 32.0 bits (71), Expect = 0.85 Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 12/117 (10%) Frame = +2 Query: 161 RKTVDLEEGWAFMQKGITKLKNILEGKPEPQFSSEDYMMLYTTIYNMC------------ 304 +K L W F++ G++++ L+ + YM LYT I+N C Sbjct: 15 KKYDSLNGTWDFLKTGVSQIFERLD----EGMTITKYMELYTAIHNYCADASKTITVDNF 70 Query: 305 TQKPPHDYSQQLYDKYRESFEEYISSMVLPSLREKHDEFMLRELVKRWSNHKAMVRW 475 + + + LY+ EEY++ + + + + E L K W+ R+ Sbjct: 71 NDQTANVLGEALYNNLVLYLEEYLARLRKECISQTNHEEQLAAYAKYWTRFTTSARF 127
>CUL1_CAEEL (Q17389) Cullin-1 (Abnormal cell lineage protein 19)| Length = 780 Score = 31.2 bits (69), Expect = 1.4 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Frame = +2 Query: 146 MTTHE--RKTVDLEEGWAFMQKGITKLKNILEGKPEPQFSSEDYMMLYTTIYNMCT 307 MT E R T D E W +Q G+ + +DYM LYT++Y+ CT Sbjct: 1 MTNSEPRRMTCDSEVVWKKLQDGLDVAYR------RENMAPKDYMTLYTSVYDYCT 50
>AMA1_PLAFG (P50490) Apical membrane antigen 1 precursor (Merozoite surface| antigen) Length = 622 Score = 30.8 bits (68), Expect = 1.9 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 6/75 (8%) Frame = +2 Query: 251 QFSSEDYMMLYTTIYNMCTQKPPHDYSQQL--YDKYRESFEEYISSMV----LPSLREKH 412 +FS+ D ++ + P Y Q L Y+K +E F+ +SM+ LP+ K Sbjct: 328 EFSANDLFECNKLVFELSASDQPKQYEQHLTDYEKIKEGFKNKNASMIKSAFLPTGAFKA 387 Query: 413 DEFMLRELVKRWSNH 457 D + W N+ Sbjct: 388 DRYKSHGKGYNWGNY 402
>AMA1_PLAFC (P50489) Apical membrane antigen 1 precursor (Merozoite surface| antigen) Length = 622 Score = 30.8 bits (68), Expect = 1.9 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 6/75 (8%) Frame = +2 Query: 251 QFSSEDYMMLYTTIYNMCTQKPPHDYSQQL--YDKYRESFEEYISSMV----LPSLREKH 412 +FS+ D ++ + P Y Q L Y+K +E F+ +SM+ LP+ K Sbjct: 328 EFSANDLFECNKLVFELSASDQPKQYEQHLTDYEKIKEGFKNKNASMIKSAFLPTGAFKA 387 Query: 413 DEFMLRELVKRWSNH 457 D + W N+ Sbjct: 388 DRYKSHGKGYNWGNY 402
>JEM1_YEAST (P40358) DnaJ-like chaperone JEM1 precursor (DnaJ-like protein of| the ER membrane 1) Length = 645 Score = 30.4 bits (67), Expect = 2.5 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = +2 Query: 182 EGWAFMQKGITKLKNILEGKPEPQFSSEDYMMLY--TTIYNMCTQKPPHDYSQQLYDKYR 355 E W Q ++ K + E ++S ++++Y +I N KP + +QLYD+ Sbjct: 410 ETWKHYQDAKSEQKPLPETVLSDVWNSNPHLLMYMVNSILNKSRSKPHSQFKKQLYDQIN 469 Query: 356 ESFEE 370 + F++ Sbjct: 470 KFFQD 474
>CUL3_MOUSE (Q9JLV5) Cullin-3 (CUL-3)| Length = 768 Score = 30.4 bits (67), Expect = 2.5 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%) Frame = +2 Query: 218 LKNILEGKPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSMVLPS 397 LKN ++ S + LY Y M H + ++LY RE E++ + V Sbjct: 37 LKNAIQEIQRKNNSGLSFEELYRNAYTMVL----HKHGEKLYTGLREVVTEHLINKVRED 92 Query: 398 LREKHDEFMLRELVKRWSNHK-AMV 469 + + L+ L + W++H+ AMV Sbjct: 93 VLNSLNNNFLQTLNQAWNDHQTAMV 117
>CUL3_HUMAN (Q13618) Cullin-3 (CUL-3)| Length = 768 Score = 30.4 bits (67), Expect = 2.5 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%) Frame = +2 Query: 218 LKNILEGKPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSMVLPS 397 LKN ++ S + LY Y M H + ++LY RE E++ + V Sbjct: 37 LKNAIQEIQRKNNSGLSFEELYRNAYTMVL----HKHGEKLYTGLREVVTEHLINKVRED 92 Query: 398 LREKHDEFMLRELVKRWSNHK-AMV 469 + + L+ L + W++H+ AMV Sbjct: 93 VLNSLNNNFLQTLNQAWNDHQTAMV 117
>Y1206_METJA (Q58603) UPF0095 protein MJ1206| Length = 424 Score = 28.5 bits (62), Expect = 9.4 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%) Frame = +2 Query: 218 LKNILEGKPEPQFSSEDYMMLYTTIYNMCTQK--PPHDYSQQLYDKYRESFEEYIS---S 382 ++ I E KPE +S D + + + N + PP Y+KYR+ +E+ I S Sbjct: 295 IQTIPEIKPEISITSNDDVEVSSVECNPSNNEELPPK------YNKYRKFYEKLIELEDS 348 Query: 383 MVLPSLREKHDEFMLRELVKRWSNHKAM 466 VL +K + + EL+ N+K++ Sbjct: 349 KVLIINGDKEEIVSIEELINNTDNYKSI 376
>ABCA1_MOUSE (P41233) ATP-binding cassette sub-family A member 1 (ATP-binding| cassette transporter 1) (ATP-binding cassette 1) (ABC-1) Length = 2261 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -2 Query: 95 SSCRVASSPLSCVGKENGRTRREGKAGRG 9 SSCR +SS +SC+ KE+ ++ AG G Sbjct: 1140 SSCRNSSSTVSCLKKEDSVSQSSSDAGLG 1168
>IF4G1_HUMAN (Q04637) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1600 Score = 28.5 bits (62), Expect = 9.4 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 1/110 (0%) Frame = +2 Query: 68 GATTRPDTS*GSGEPPRPDPTXXXXXMTTHERKTVDLEEGWAFMQKGITKLKNILEGKPE 247 G+ P++ GSG PPRP+ + +E W + I +NI G+ + Sbjct: 551 GSNPGPESE-GSGVPPRPE----------------EADETWDSKEDKIHNAENIQPGEQK 593 Query: 248 PQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDK-YRESFEEYISSMVLP 394 ++ S+ + KPP+ ++ YD+ + F+ +SM P Sbjct: 594 YEYKSDQW-------------KPPNLEEKKRYDREFLLGFQFIFASMQKP 630 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,712,639 Number of Sequences: 219361 Number of extensions: 769259 Number of successful extensions: 2818 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2758 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2815 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
