Clone Information

BLAST Search Result

Clone Name	bastl04e11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	COPB2_MOUSE (O55029) Coatomer subunit beta' (Beta'-coat protein)...	137	9e-33
2	COPB2_HUMAN (P35606) Coatomer subunit beta' (Beta'-coat protein)...	135	3e-32
3	COPB2_BOVIN (P35605) Coatomer subunit beta' (Beta'-coat protein)...	135	3e-32
4	COPB2_RAT (O35142) Coatomer subunit beta' (Beta'-coat protein) (...	133	2e-31
5	COPB2_CAEEL (Q20168) Probable coatomer subunit beta' (Beta'-coat...	122	3e-28
6	COPB2_DROME (O62621) Coatomer subunit beta' (Beta'-coat protein)...	114	1e-25
7	COPB2_YEAST (P41811) Coatomer subunit beta' (Beta'-coat protein)...	108	6e-24
8	COPB2_SCHPO (O42937) Probable coatomer subunit beta' (Beta'-coat...	106	3e-23
9	COPA_HUMAN (P53621) Coatomer subunit alpha (Alpha-coat protein) ...	60	3e-09
10	COPA_BOVIN (Q27954) Coatomer subunit alpha (Alpha-coat protein) ...	60	3e-09
11	COPA_YEAST (P53622) Coatomer subunit alpha (Alpha-coat protein) ...	54	2e-07
12	COPA_CANFA (P40765) Coatomer subunit alpha (Alpha-coat protein) ...	35	0.061
13	Y1409_SYNY3 (P73594) Hypothetical WD-repeat protein slr1409	35	0.061
14	Y143_SYNY3 (P74442) Hypothetical WD-repeat protein slr0143	33	0.23
15	TAF5_HUMAN (Q15542) Transcription initiation factor TFIID subuni...	33	0.30
16	TAF5_MOUSE (Q8C092) Transcription initiation factor TFIID subuni...	33	0.30
17	KTNB1_CHICK (Q5ZIU8) Katanin p80 WD40-containing subunit B1 (Kat...	32	0.51
18	GBB_ORYSA (Q40687) Guanine nucleotide-binding protein beta subunit	32	0.51
19	GBB_MAIZE (P49178) Guanine nucleotide-binding protein beta subunit	32	0.51
20	KTNB1_MOUSE (Q8BG40) Katanin p80 WD40-containing subunit B1 (Kat...	32	0.51
21	TLE6_MOUSE (Q9WVB3) Transducin-like enhancer protein 6 (Groucho-...	32	0.51
22	KTNB1_HUMAN (Q9BVA0) Katanin p80 WD40-containing subunit B1 (Kat...	32	0.51
23	YRIQ_CAEEL (P90794) Hypothetical WD-repeat protein D2030.9	32	0.67
24	KTNB1_BRARE (Q7ZUV2) Katanin p80 WD40-containing subunit B1 homolog	32	0.67
25	POL_HV2G1 (P18042) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	32	0.67
26	ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atr...	32	0.87
27	ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atr...	32	0.87
28	MN1_HUMAN (Q10571) Probable tumor suppressor protein MN1	32	0.87
29	POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	32	0.87
30	KTNB1_ARATH (Q8H0T9) Katanin p80 WD40-containing subunit B1 homo...	31	1.1
31	MYO2A_SACCA (Q875X3) Myosin-2A (Class V unconventional myosin MY...	31	1.5
32	LIS1_CAEEL (Q9NDC9) Lissencephaly-1 homolog (Pronuclear migratio...	30	1.9
33	KTNB1_STRPU (O61585) Katanin p80 WD40-containing subunit B1 (Kat...	30	1.9
34	WDR23_MOUSE (Q91VU6) WD-repeat protein 23	30	2.5
35	WDR23_HUMAN (Q8TEB1) WD-repeat protein 23	30	2.5
36	YR154_MIMIV (Q5UPL6) Putative BTB/POZ domain and WD-repeat prote...	30	2.5
37	WSB2_MOUSE (O54929) WD repeat and SOCS box-containing protein 2 ...	30	3.3
38	SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains pro...	30	3.3
39	YTM1_YEAST (Q12024) Microtubule-associated protein YTM1	29	4.3
40	ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrop...	29	4.3
41	TLE2_HUMAN (Q04725) Transducin-like enhancer protein 2 (ESG2)	29	5.7
42	HXD13_HETFR (Q9IA17) Homeobox protein Hox-D13	29	5.7
43	IRAK1_HUMAN (P51617) Interleukin-1 receptor-associated kinase 1 ...	29	5.7
44	PDE8B_HUMAN (O95263) High-affinity cAMP-specific and IBMX-insens...	29	5.7
45	IL32_HUMAN (P24001) Interleukin-32 precursor (IL-32) (Natural ki...	28	7.4
46	WDS_DROME (Q9V3J8) Protein will die slowly	28	7.4
47	SKB15_SCHPO (O74453) Shk1 kinase-binding protein 15	28	7.4
48	4ET_HUMAN (Q9NRA8) Eukaryotic translation initiation factor 4E t...	28	7.4
49	CHEB1_PSEAE (O87125) Chemotaxis response regulator protein-gluta...	28	7.4
50	PRP19_CHICK (Q5ZMA2) Pre-mRNA-splicing factor 19 (PRP19/PSO4 hom...	28	7.4
51	HAT2_YARLI (Q6C7Q4) Histone acetyltransferase type B subunit 2 (...	28	9.7
52	MKL1_HUMAN (Q969V6) MKL/myocardin-like protein 1 (Myocardin-rela...	28	9.7
53	AAC3_DICDI (P14197) AAC-rich mRNA clone AAC3 protein (Fragment)	28	9.7
54	WD51A_BOVIN (Q2TBP4) WD-repeat protein 51A	28	9.7
55	TLE1_XENLA (O42469) Enhancer of split groucho-like protein 1	28	9.7
56	GBB_YEAST (P18851) Guanine nucleotide-binding protein beta subunit	28	9.7
57	YMM1_CAEEL (P34489) Hypothetical protein K01B6.1	28	9.7
58	GBLP_NEUCR (Q01369) Guanine nucleotide-binding protein beta subu...	28	9.7
59	PRP19_RAT (Q9JMJ4) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homol...	28	9.7
60	PRP19_MOUSE (Q99KP6) Pre-mRNA-splicing factor 19 (PRP19/PSO4 hom...	28	9.7
61	PRP19_HUMAN (Q9UMS4) Pre-mRNA-splicing factor 19 (PRP19/PSO4 hom...	28	9.7

>COPB2_MOUSE (O55029) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)|
           (p102)
          Length = 905

 Score =  137 bits (346), Expect = 9e-33
 Identities = 61/79 (77%), Positives = 73/79 (92%)
 Frame = +3

Query: 198 MPLRLDIKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPV 377
           MPLRLDIKRKL  RS+RVKS DLHPTEPW+L+SLY+GSVC+WN++TQT+VK+FEV +LPV
Sbjct: 1   MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV 60

Query: 378 RSAKFIARKQWVVAGADDM 434
           R+AKF+ARK WVV GADDM
Sbjct: 61  RAAKFVARKNWVVTGADDM 79



 Score = 30.8 bits (68), Expect = 1.5
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 276 EPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQWVVAGADD 431
           +P+++S      V IW+YQ +T V++ E     V  A F      ++ G++D
Sbjct: 199 KPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSED 250

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>COPB2_HUMAN (P35606) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)|
           (p102)
          Length = 905

 Score =  135 bits (341), Expect = 3e-32
 Identities = 60/78 (76%), Positives = 72/78 (92%)
 Frame = +3

Query: 201 PLRLDIKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVR 380
           PLRLDIKRKL  RS+RVKS DLHPTEPW+L+SLY+GSVC+WN++TQT+VK+FEV +LPVR
Sbjct: 1   PLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVR 60

Query: 381 SAKFIARKQWVVAGADDM 434
           +AKF+ARK WVV GADDM
Sbjct: 61  AAKFVARKNWVVTGADDM 78



 Score = 30.8 bits (68), Expect = 1.5
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 276 EPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQWVVAGADD 431
           +P+++S      V IW+YQ +T V++ E     V  A F      ++ G++D
Sbjct: 198 KPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSED 249

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>COPB2_BOVIN (P35605) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)|
           (p102)
          Length = 905

 Score =  135 bits (341), Expect = 3e-32
 Identities = 60/78 (76%), Positives = 72/78 (92%)
 Frame = +3

Query: 201 PLRLDIKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVR 380
           PLRLDIKRKL  RS+RVKS DLHPTEPW+L+SLY+GSVC+WN++TQT+VK+FEV +LPVR
Sbjct: 1   PLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVR 60

Query: 381 SAKFIARKQWVVAGADDM 434
           +AKF+ARK WVV GADDM
Sbjct: 61  AAKFVARKNWVVTGADDM 78



 Score = 30.8 bits (68), Expect = 1.5
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 276 EPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQWVVAGADD 431
           +P+++S      V IW+YQ +T V++ E     V  A F      ++ G++D
Sbjct: 198 KPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSED 249

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>COPB2_RAT (O35142) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)|
           (p102)
          Length = 904

 Score =  133 bits (335), Expect = 2e-31
 Identities = 59/78 (75%), Positives = 71/78 (91%)
 Frame = +3

Query: 201 PLRLDIKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVR 380
           PLRLDIKRKL   S+RVKS DLHPTEPW+L+SLY+GSVC+WN++TQT+VK+FEV +LPVR
Sbjct: 1   PLRLDIKRKLTAMSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVR 60

Query: 381 SAKFIARKQWVVAGADDM 434
           +AKF+ARK WVV GADDM
Sbjct: 61  AAKFVARKNWVVTGADDM 78



 Score = 28.9 bits (63), Expect = 5.7
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 276 EPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQWVVAGADD 431
           +P+++S      V IW+YQ +T V++ E     V  A F      ++ G++D
Sbjct: 198 KPYLISGADDRLVKIWDYQNKTCVQTPEGHAQNVSCATFHPELPIIITGSED 249

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>COPB2_CAEEL (Q20168) Probable coatomer subunit beta' (Beta'-coat protein)|
           (Beta'-COP)
          Length = 1000

 Score =  122 bits (307), Expect = 3e-28
 Identities = 54/79 (68%), Positives = 68/79 (86%)
 Frame = +3

Query: 198 MPLRLDIKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPV 377
           MPLRLD+KRKL  RS+RVK  DLHP E W+L++LY+G+V IWNY+TQT+VKSFEV ++PV
Sbjct: 1   MPLRLDVKRKLLARSDRVKCVDLHPVETWLLAALYNGNVHIWNYETQTLVKSFEVCDVPV 60

Query: 378 RSAKFIARKQWVVAGADDM 434
           R+AKF+ RK WVV G+DDM
Sbjct: 61  RAAKFVPRKSWVVTGSDDM 79



 Score = 30.0 bits (66), Expect = 2.5
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 276 EPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQWVVAGADD 431
           +P+I+S      V IW+YQ +T V++ +     V S  F      ++ G++D
Sbjct: 199 KPYIISGADDHLVKIWDYQNKTCVQTLDGHAQNVSSVCFHPELPLIITGSED 250



 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 240 SERVKSADLHPTEPWILSSLYSGSVCIWNYQTQ-TMVKSFE 359
           S+ ++S  +HPT P+++SS     V +W++  +  M +SFE
Sbjct: 99  SDYLRSLVVHPTLPYVISSSDDMLVKMWDWDNKWAMKQSFE 139

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>COPB2_DROME (O62621) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)|
          Length = 914

 Score =  114 bits (284), Expect = 1e-25
 Identities = 50/79 (63%), Positives = 64/79 (81%)
 Frame = +3

Query: 198 MPLRLDIKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPV 377
           MPL+LDIKR+L  RS+RVK  DLHP EPW+L +LY+G V I NY+ Q MVK FEV ++PV
Sbjct: 1   MPLKLDIKRRLTSRSDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQQMVKDFEVCDVPV 60

Query: 378 RSAKFIARKQWVVAGADDM 434
           RSA+F+ARK W++ G+DDM
Sbjct: 61  RSARFVARKNWILTGSDDM 79



 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +3

Query: 276 EPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQWVVAGADD 431
           +P+++S      V IW+YQ +T V++ E     + +  F      V+ G++D
Sbjct: 199 KPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNISAVCFHPELPIVLTGSED 250

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>COPB2_YEAST (P41811) Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP)|
          Length = 889

 Score =  108 bits (270), Expect = 6e-24
 Identities = 45/76 (59%), Positives = 61/76 (80%)
 Frame = +3

Query: 204 LRLDIKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRS 383
           ++LDIK+  + RS+RVK  D HPTEPW+L++LYSG V +WNY+TQ  V+S +VTE PVR+
Sbjct: 1   MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60

Query: 384 AKFIARKQWVVAGADD 431
            KFIARK W++ G+DD
Sbjct: 61  GKFIARKNWIIVGSDD 76



 Score = 30.0 bits (66), Expect = 2.5
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 249 VKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEV 362
           V  A  HPT P I+S    G++ IWN  T  + K+  V
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268



 Score = 29.6 bits (65), Expect = 3.3
 Identities = 14/54 (25%), Positives = 31/54 (57%)
 Frame = +3

Query: 270 PTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQWVVAGADD 431
           P +P+++++    ++ IW+YQT++ V + E     V  A F      +++G++D
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249



 Score = 29.6 bits (65), Expect = 3.3
 Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +3

Query: 249 VKSADLHPTEPWILSSLYSGSVCIWNYQTQ-TMVKSFE 359
           ++S  +HPT+P++LS     +V +WN++    + ++FE
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137

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>COPB2_SCHPO (O42937) Probable coatomer subunit beta' (Beta'-coat protein)|
           (Beta'-COP)
          Length = 796

 Score =  106 bits (264), Expect = 3e-23
 Identities = 43/76 (56%), Positives = 60/76 (78%)
 Frame = +3

Query: 204 LRLDIKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRS 383
           +RLD +RKL   +ERVK+ D HPTEPW+++S Y+G V IWNY TQT+V+SF++ ++P+R+
Sbjct: 2   MRLDFQRKLLSHTERVKAVDFHPTEPWVIASHYNGQVGIWNYNTQTLVRSFDINDVPIRA 61

Query: 384 AKFIARKQWVVAGADD 431
             FIARK W V G+DD
Sbjct: 62  CAFIARKNWFVCGSDD 77

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>COPA_HUMAN (P53621) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
           (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related
           peptide); Proxenin]
          Length = 1224

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 26/69 (37%), Positives = 41/69 (59%)
 Frame = +3

Query: 225 KLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARK 404
           K   +S RVK    HP  PWIL+SL++G + +W+Y+  T++  F+  + PVR   F  ++
Sbjct: 4   KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQ 63

Query: 405 QWVVAGADD 431
              V+G DD
Sbjct: 64  PLFVSGGDD 72



 Score = 31.6 bits (70), Expect = 0.87
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +3

Query: 249 VKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQWVVAGAD 428
           +++   H   PWILS+    ++ +WN+Q++T V         V  A+F   +  VV+ + 
Sbjct: 96  IRTTFFHHEYPWILSASDDQTIRVWNWQSRTCVCVLTGHNHYVMCAQFHPTEDLVVSASL 155

Query: 429 D 431
           D
Sbjct: 156 D 156

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>COPA_BOVIN (Q27954) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
           (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related
           peptide); Proxenin]
          Length = 1224

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 26/69 (37%), Positives = 41/69 (59%)
 Frame = +3

Query: 225 KLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARK 404
           K   +S RVK    HP  PWIL+SL++G + +W+Y+  T++  F+  + PVR   F  ++
Sbjct: 4   KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQ 63

Query: 405 QWVVAGADD 431
              V+G DD
Sbjct: 64  PLFVSGGDD 72



 Score = 31.6 bits (70), Expect = 0.87
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +3

Query: 249 VKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQWVVAGAD 428
           +++   H   PWILS+    ++ +WN+Q++T V         V  A+F   +  VV+ + 
Sbjct: 96  IRTTFFHHEYPWILSASDDQTIRVWNWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASL 155

Query: 429 D 431
           D
Sbjct: 156 D 156

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>COPA_YEAST (P53622) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
          Length = 1201

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 24/69 (34%), Positives = 38/69 (55%)
 Frame = +3

Query: 225 KLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARK 404
           K   +S R K    HP+ PW+L +L+S ++ +W+Y+  T++  FE  E PVR   F   +
Sbjct: 6   KFESKSTRAKGIAFHPSRPWVLVALFSSTIQLWDYRMGTLLHRFEDHEGPVRGLDFHPTQ 65

Query: 405 QWVVAGADD 431
              V+  DD
Sbjct: 66  PIFVSAGDD 74



 Score = 32.3 bits (72), Expect = 0.51
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +3

Query: 249 VKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQWVVAGAD 428
           V+  D HPT+P  +S+    ++ +W+  T   + +       VR+  F     W+++ +D
Sbjct: 56  VRGLDFHPTQPIFVSAGDDYTIKVWSLDTNKCLYTLTGHLDYVRTVFFHRELPWIISASD 115

Query: 429 D 431
           D
Sbjct: 116 D 116

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>COPA_CANFA (P40765) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
           (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related
           peptide); Proxenin] (Fragment)
          Length = 35

 Score = 35.4 bits (80), Expect = 0.061
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 225 KLAQRSERVKSADLHPTEPWILSSLYSGSV 314
           K   +S RVK    HP  PWIL+SL++G +
Sbjct: 4   KFETKSARVKGLSFHPKRPWILTSLHNGVI 33

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>Y1409_SYNY3 (P73594) Hypothetical WD-repeat protein slr1409|
          Length = 326

 Score = 35.4 bits (80), Expect = 0.061
 Identities = 18/72 (25%), Positives = 37/72 (51%)
 Frame = +3

Query: 216 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFI 395
           I+R+++    R+ + +  P    +L+S  +GS  +WN   + + +   V    V SA+F 
Sbjct: 204 IEREISTGQGRINNVNFSPNGEQLLTSGINGSAKLWNLAGELIHEYKVVPTGWVNSAQFY 263

Query: 396 ARKQWVVAGADD 431
            + +W+   +DD
Sbjct: 264 PKGEWLATASDD 275

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>Y143_SYNY3 (P74442) Hypothetical WD-repeat protein slr0143|
          Length = 1191

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +3

Query: 234  QRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKS 353
            QR E ++S  LHPT P + +    G++ +WN+   T+++S
Sbjct: 995  QRKEPIRSVSLHPTLPQLAAGDEQGNLTLWNFD-GTLIRS 1033

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>TAF5_HUMAN (Q15542) Transcription initiation factor TFIID subunit 5|
           (Transcription initiation factor TFIID 100 kDa subunit)
           (TAF(II)100) (TAFII-100) (TAFII100)
          Length = 800

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 249 VKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQWVVAGAD 428
           V  A   P   ++LSS   G+V +W+ QT T +  ++    PV   +F     + V+G  
Sbjct: 546 VYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGH 605

Query: 429 D 431
           D
Sbjct: 606 D 606

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>TAF5_MOUSE (Q8C092) Transcription initiation factor TFIID subunit 5|
           (Transcription initiation factor TFIID 100 kDa subunit)
           (TAF(II)100) (TAFII-100) (TAFII100)
          Length = 801

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 249 VKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQWVVAGAD 428
           V  A   P   ++LSS   G+V +W+ QT T +  ++    PV   +F     + V+G  
Sbjct: 547 VYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGH 606

Query: 429 D 431
           D
Sbjct: 607 D 607

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>KTNB1_CHICK (Q5ZIU8) Katanin p80 WD40-containing subunit B1 (Katanin p80|
           subunit B1) (p80 katanin)
          Length = 657

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 16/72 (22%), Positives = 31/72 (43%)
 Frame = +3

Query: 216 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFI 395
           I R L      + S D HP   ++ S      + +W+ + +  +  ++     VR  +F 
Sbjct: 96  ILRTLLGHKANICSLDFHPYGSFVASGSLDTDIKLWDVRRKGCIFKYKSHTQAVRCLRFS 155

Query: 396 ARKQWVVAGADD 431
              +W+ + ADD
Sbjct: 156 PDGKWLASAADD 167

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>GBB_ORYSA (Q40687) Guanine nucleotide-binding protein beta subunit|
          Length = 380

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 22/77 (28%), Positives = 32/77 (41%)
 Frame = +3

Query: 201 PLRLDIKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVR 380
           P  L   R L   S +V S D  P + WI+S+   G + +WN  T     + ++    V 
Sbjct: 53  PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVM 112

Query: 381 SAKFIARKQWVVAGADD 431
           +  F    Q V  G  D
Sbjct: 113 TCAFAPNGQSVACGGLD 129

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>GBB_MAIZE (P49178) Guanine nucleotide-binding protein beta subunit|
          Length = 380

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 22/77 (28%), Positives = 32/77 (41%)
 Frame = +3

Query: 201 PLRLDIKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVR 380
           P  L   R L   S +V S D  P + WI+S+   G + +WN  T     + ++    V 
Sbjct: 53  PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVM 112

Query: 381 SAKFIARKQWVVAGADD 431
           +  F    Q V  G  D
Sbjct: 113 ACAFAPNGQSVACGGLD 129

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>KTNB1_MOUSE (Q8BG40) Katanin p80 WD40-containing subunit B1 (Katanin p80|
           subunit B1) (p80 katanin)
          Length = 658

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +3

Query: 216 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFI 395
           I R L      + S D HP   ++ S     ++ +W+ + +  V  +      VR  +F 
Sbjct: 97  ILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFS 156

Query: 396 ARKQWVVAGADD 431
              +W+ + ADD
Sbjct: 157 PDGKWLASAADD 168



 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/68 (22%), Positives = 34/68 (50%)
 Frame = +3

Query: 228 LAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQ 407
           L   +  V+S  L+  E  I++   SGS+ +W+ +   ++++    +  + S  F    +
Sbjct: 59  LTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGE 118

Query: 408 WVVAGADD 431
           +V +G+ D
Sbjct: 119 FVASGSQD 126

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>TLE6_MOUSE (Q9WVB3) Transducin-like enhancer protein 6 (Groucho-related|
           protein 6)
          Length = 581

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 270 PTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQW 410
           PTE W+L  L +G  C++N + +  V + +  +  +   KF    +W
Sbjct: 478 PTEDWLLLGLANGQHCLFNSRKRDQVLTVDTKDNTILGLKFSPNGKW 524

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>KTNB1_HUMAN (Q9BVA0) Katanin p80 WD40-containing subunit B1 (Katanin p80|
           subunit B1) (p80 katanin)
          Length = 655

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +3

Query: 216 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFI 395
           I R L      + S D HP   ++ S     ++ +W+ + +  V  +      VR  +F 
Sbjct: 97  ILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFS 156

Query: 396 ARKQWVVAGADD 431
              +W+ + ADD
Sbjct: 157 PDGKWLASAADD 168



 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/68 (22%), Positives = 34/68 (50%)
 Frame = +3

Query: 228 LAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQ 407
           L   +  V+S  L+  E  I++   SGS+ +W+ +   ++++    +  + S  F    +
Sbjct: 59  LTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGE 118

Query: 408 WVVAGADD 431
           +V +G+ D
Sbjct: 119 FVASGSQD 126

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>YRIQ_CAEEL (P90794) Hypothetical WD-repeat protein D2030.9|
          Length = 571

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 216 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNY 329
           + R+L   +  V+  D HPTE  I+SS + G   +W +
Sbjct: 476 VSRRLKGHTAVVRECDWHPTENEIVSSAWDGVTTVWTW 513

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>KTNB1_BRARE (Q7ZUV2) Katanin p80 WD40-containing subunit B1 homolog|
          Length = 694

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 16/72 (22%), Positives = 31/72 (43%)
 Frame = +3

Query: 216 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFI 395
           I R L      + S D HP   ++ S     ++ +W+ + +  V  ++     VR   F 
Sbjct: 97  ILRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFS 156

Query: 396 ARKQWVVAGADD 431
              +W+ + +DD
Sbjct: 157 PDGKWLASASDD 168

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>POL_HV2G1 (P18042) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1463

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 86  REAGHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVG--YQEEARAEVGEGQ 253
           R+AG  R  +    AP  P G SSS G+   + PSR ++  +G  Y    RAE  EG+
Sbjct: 428 RQAGFLRDGSMGKEAPQLPRGPSSS-GADTNSTPSRSSSGSIGKIYAAGERAEGAEGE 484

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>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1186

 Score = 31.6 bits (70), Expect = 0.87
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = +2

Query: 95  GHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVG 214
           G P G   H P PT P+  SSS  S  GA P++    PVG
Sbjct: 244 GGPNGGKQHPP-PTTPISVSSSGAS--GAPPTKPPTTPVG 280

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>ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1185

 Score = 31.6 bits (70), Expect = 0.87
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = +2

Query: 95  GHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVG 214
           G P G   H P PT P+  SSS  S  GA P++    PVG
Sbjct: 245 GGPNGGKQHPP-PTTPISVSSSGAS--GAPPTKPPTTPVG 281

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>MN1_HUMAN (Q10571) Probable tumor suppressor protein MN1|
          Length = 1319

 Score = 31.6 bits (70), Expect = 0.87
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 98  HPRGSASHA-PAPTNPLGTSSSRGSRFGALPSRHNAAPVGYQEEARAEVGEGQV 256
           H  G++SHA PAP  PL  S +R + F  LPS  ++    +  E R    +G V
Sbjct: 177 HSSGASSHAVPAPCLPLDQSPNRAASFHGLPS--SSGSDSHSLEPRRVTNQGAV 228

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>POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 31.6 bits (70), Expect = 0.87
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +2

Query: 86  REAGHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVG--YQEEARAEVGEGQ 253
           R+AG   G    A AP  P G SSS G+   + P+R ++ PVG  Y    +AE  EG+
Sbjct: 427 RQAGFLDGPTGKA-APQLPRGPSSS-GADTNSTPNRSSSGPVGEIYAAREKAERAEGE 482

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>KTNB1_ARATH (Q8H0T9) Katanin p80 WD40-containing subunit B1 homolog 1|
          Length = 837

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +3

Query: 216 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFI 395
           I R L        S D HP   +  S     ++ IW+ + +  + +++     V   +F 
Sbjct: 93  IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFT 152

Query: 396 ARKQWVVAGADD 431
              +WVV+G +D
Sbjct: 153 PDGRWVVSGGED 164

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>MYO2A_SACCA (Q875X3) Myosin-2A (Class V unconventional myosin MYO2A) (Type V|
            myosin heavy chain MYO2A) (Myosin V MYO2A)
          Length = 1567

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 143  LGTSSSRGSRFGALPSRHNAAPVGYQEEARAEVGEGQVRGSASDRAMDFV 292
            LGT ++  +     PSR N  P G+   A   +   Q++   SD A D V
Sbjct: 1091 LGTVTTNTNIVPHTPSRENRMPSGHMRAAEENISPNQLKSIPSDTAADHV 1140

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>LIS1_CAEEL (Q9NDC9) Lissencephaly-1 homolog (Pronuclear migration abnormal|
           protein 1)
          Length = 404

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 17/74 (22%), Positives = 31/74 (41%)
 Frame = +3

Query: 213 DIKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKF 392
           D+   L      V+    HP   +++S     ++ +W    Q  +K+ E  E  V +  F
Sbjct: 323 DVLFTLLAHENWVRGLAFHPKGKYLISVADDKTLRVWELSAQRCMKAIEAHEHFVSTVAF 382

Query: 393 IARKQWVVAGADDM 434
                +V+ G+ DM
Sbjct: 383 HQTSPFVITGSVDM 396

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>KTNB1_STRPU (O61585) Katanin p80 WD40-containing subunit B1 (Katanin p80|
           subunit B1) (p80 katanin)
          Length = 690

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 15/72 (20%), Positives = 32/72 (44%)
 Frame = +3

Query: 216 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFI 395
           I R L      ++  D HP   ++ S     +V +W+ + +  + +++     V   KF 
Sbjct: 93  IVRTLTGHRNSIRCMDFHPFGEFVASGSTDTNVKLWDVRRKGCIYTYKGHSDQVNMIKFS 152

Query: 396 ARKQWVVAGADD 431
              +W+V  ++D
Sbjct: 153 PDGKWLVTASED 164

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>WDR23_MOUSE (Q91VU6) WD-repeat protein 23|
          Length = 549

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 216 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQ 332
           I +KL      V+    HP E  I+SS + G++ +W Y+
Sbjct: 475 IVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYR 513

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>WDR23_HUMAN (Q8TEB1) WD-repeat protein 23|
          Length = 546

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 216 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQ 332
           I +KL      V+    HP E  I+SS + G++ +W Y+
Sbjct: 475 IVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYR 513

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>YR154_MIMIV (Q5UPL6) Putative BTB/POZ domain and WD-repeat protein R154|
          Length = 468

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +3

Query: 285 ILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIAR-KQWVVAGAD 428
           IL   ++G + IWN +  T+VKS ++ ++P+ S  +     Q +VA  D
Sbjct: 376 ILVGCHNGLMDIWNLKKLTLVKSTQLFDVPIISMTYSPNGDQLIVANCD 424

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>WSB2_MOUSE (O54929) WD repeat and SOCS box-containing protein 2 (WSB-2) (SOCS|
           box-containing WD protein SWiP-2)
          Length = 404

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 222 RKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTEL 371
           RKL      V S D  P    ++++ Y  SV +W+  T   ++S   T+L
Sbjct: 233 RKLEGHQSSVVSCDFSPDSALLVTASYDTSVIMWDPYTGARLRSLHHTQL 282

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>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
           (Somatostatin receptor-interacting protein)
           (SSTR-interacting protein) (SSTRIP)
          Length = 2161

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 19/113 (16%)
 Frame = +2

Query: 101 PRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVGYQEEARAEVG------------ 244
           P G    +  P   LG+   R   + A+P R   A   YQ +A  E+             
Sbjct: 527 PAGGTGGSGGPGGSLGSRGRRRKLYSAVPGRSFMAVKSYQAQAEGEISLSKGEKIKVLSI 586

Query: 245 ------EGQVRGSASDRAMDFVESLLGECLHLELPN-ADNGEII*SHRVTGSF 382
                 EGQV+G       D +E +       +  + +D  + +  H   GS+
Sbjct: 587 GEGGFWEGQVKGRVGWFPSDCLEEVANRSQESKQESRSDKAKRLFRHYTVGSY 639

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>YTM1_YEAST (Q12024) Microtubule-associated protein YTM1|
          Length = 460

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +3

Query: 249 VKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQWVVAGAD 428
           V S D+      I+S  Y G V  W+       K +     P+R+ K+I+  + V AG D
Sbjct: 106 VSSLDVGDGSKHIISGSYDGIVRTWDLSGNVQ-KQYSGHSGPIRAVKYISNTRLVSAGND 164

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>ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1183

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = +2

Query: 95  GHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVG 214
           G P G   H P PT P+  SSS  S  GA P++    PVG
Sbjct: 246 GPPSGGKQHPP-PTTPIPISSSGAS--GAPPAKPPNTPVG 282

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>TLE2_HUMAN (Q04725) Transducin-like enhancer protein 2 (ESG2)|
          Length = 743

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 216 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFE 359
           IK +L   +    +  + P      S    G++ +W+ Q QTMV+ F+
Sbjct: 539 IKAELTSSAPACYALAVSPDAKVCFSCCSDGNIVVWDLQNQTMVRQFQ 586

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>HXD13_HETFR (Q9IA17) Homeobox protein Hox-D13|
          Length = 284

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +2

Query: 116 SHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVGYQEEARAEVGEGQVRGSASDRAMD 286
           S  PAPT+P   + S G  FG+  S ++   VG Q+          + G   D+ MD
Sbjct: 53  SPCPAPTSPPNPAISYGYHFGS--SYYSCRNVGIQQTGLKSGAHASLAGYPVDKYMD 107

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>IRAK1_HUMAN (P51617) Interleukin-1 receptor-associated kinase 1 (EC 2.7.11.1)|
           (IRAK-1)
          Length = 712

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = +2

Query: 95  GHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVGYQEEARAEVGEGQVRGSASD 274
           GH   ++   P+P      SS+  +  GA P +  AAP G   +A  ++  G  +   SD
Sbjct: 530 GHSEAASCIPPSPQENSYVSSTGRAHSGAAPWQPLAAPSGASAQAAEQLQRGPNQPVESD 589

Query: 275 RAMDFVESLL 304
            ++  + + L
Sbjct: 590 ESLGGLSAAL 599

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>PDE8B_HUMAN (O95263) High-affinity cAMP-specific and IBMX-insensitive|
           3',5'-cyclic phosphodiesterase 8B (EC 3.1.4.17)
           (HSPDE8B)
          Length = 885

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +2

Query: 89  EAGHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAP--VGYQEEARAEVGEGQVRG 262
           E+  PR + S +  P  PL     +     A+P    + P  V     AR E+G G   G
Sbjct: 22  ESSSPRQTTSVSQGPAAPLPGLFVQTDAADAIPPSRASGPPSVARVRRARTELGSGSSAG 81

Query: 263 SASDRA 280
           SA+  A
Sbjct: 82  SAAPAA 87

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>IL32_HUMAN (P24001) Interleukin-32 precursor (IL-32) (Natural killer cells|
           protein 4)
          Length = 234

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 182 LPSRHNAAPVGYQEEARAEVGEGQVRGSASDRAMDFVESLL 304
           L S+H A    Y +   AE G GQV  S ++   DF E  L
Sbjct: 61  LSSQHQAIERFYDKMQNAESGRGQVMSSLAELEDDFKEGYL 101

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>WDS_DROME (Q9V3J8) Protein will die slowly|
          Length = 361

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 16/72 (22%), Positives = 31/72 (43%)
 Frame = +3

Query: 216 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFI 395
           +K  LA  ++ V +    P   W+ SS     + IW        K+    +L +    + 
Sbjct: 64  LKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 123

Query: 396 ARKQWVVAGADD 431
           +  + +V+G+DD
Sbjct: 124 SDSRLLVSGSDD 135

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>SKB15_SCHPO (O74453) Shk1 kinase-binding protein 15|
          Length = 341

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 216 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWN 326
           I  +     +RVKS  ++P + +++++   GSVCIW+
Sbjct: 231 ILHEFTAHKKRVKS--VYPVDDYLITASSDGSVCIWD 265

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>4ET_HUMAN (Q9NRA8) Eukaryotic translation initiation factor 4E transporter|
            (eIF4E transporter) (4E-T) (Eukaryotic translation
            initiation factor 4E nuclear import factor 1)
          Length = 985

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
 Frame = +2

Query: 80   VRREAGHPRGSASHAPA---PTNPLGTSSSRG-----SRFGALPSRHNAAPVG 214
            ++R   HP GS SHA A    T P    S  G     S+    PS+ +++PVG
Sbjct: 902  LQRSVLHPPGSGSHAAAVSVQTTPQNVPSRSGLPHMHSQLEHRPSQRSSSPVG 954

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>CHEB1_PSEAE (O87125) Chemotaxis response regulator protein-glutamate|
           methylesterase of group 1 operon (EC 3.1.1.61)
          Length = 368

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 110 SASHAPAPTNPLGTSSSRGSRFGALPSRHNAAP 208
           S+SHAPA ++ +G S+  G+     P+  +AAP
Sbjct: 147 SSSHAPASSSSVGASARVGAGASPAPASTSAAP 179

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>PRP19_CHICK (Q5ZMA2) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog)|
          Length = 505

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 15/68 (22%), Positives = 31/68 (45%)
 Frame = +3

Query: 228 LAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQ 407
           L   S++V S   HP++  + S+    ++ IW+    + V+     E  V      A   
Sbjct: 261 LKGHSKKVTSVVFHPSQDLVFSASPDATIRIWSVPNASCVQVVRAHEGSVTGLSLHATGD 320

Query: 408 WVVAGADD 431
           ++++ +DD
Sbjct: 321 YLLSSSDD 328

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>HAT2_YARLI (Q6C7Q4) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)|
          Length = 452

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 240 SERVKSADLHPTEPWILSSLYSGSVC-IW 323
           S R+   D HPT PW+++S    +V  +W
Sbjct: 403 SSRISDFDWHPTLPWVIASAAEDNVIQVW 431

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>MKL1_HUMAN (Q969V6) MKL/myocardin-like protein 1 (Myocardin-related|
           transcription factor A) (MRTF-A) (Megakaryoblastic
           leukemia 1 protein) (Megacaryocytic acute leukemia
           protein)
          Length = 931

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +2

Query: 116 SHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVGYQEEARAEVGEGQVRGSASDRAMDFVE 295
           S APAP+  +         FG   S     P GY EEA ++  + Q  GS+S +  D  +
Sbjct: 695 SPAPAPSAQMDLEHPLQPLFGTPTSLLKKEPPGY-EEAMSQQPKQQENGSSSQQMDDLFD 753

Query: 296 SLL 304
            L+
Sbjct: 754 ILI 756

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>AAC3_DICDI (P14197) AAC-rich mRNA clone AAC3 protein (Fragment)|
          Length = 437

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +3

Query: 261 DLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQWVVAGA 425
           +  PT  ++ +      V +W+ +    VK+F  +  P RS  F    Q++ A +
Sbjct: 325 EFDPTGKYLAAGSADSIVSLWDIEDMMCVKTFIKSTFPCRSVSFSFDGQFIAASS 379

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>WD51A_BOVIN (Q2TBP4) WD-repeat protein 51A|
          Length = 407

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/61 (19%), Positives = 29/61 (47%)
 Frame = +3

Query: 249 VKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQWVVAGAD 428
           V   D HP+   I ++    +V +W+ +T  +++ +++    V +  F     ++V  + 
Sbjct: 190 VTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNYLVTASS 249

Query: 429 D 431
           D
Sbjct: 250 D 250

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>TLE1_XENLA (O42469) Enhancer of split groucho-like protein 1|
          Length = 767

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +3

Query: 216 IKRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFE 359
           IK +L   +    +  + P      S    G++ +W+ Q QT+V+ F+
Sbjct: 563 IKAELTSSAPACYALAISPDAKVCFSCCSDGNIVVWDLQNQTLVRQFQ 610

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>GBB_YEAST (P18851) Guanine nucleotide-binding protein beta subunit|
          Length = 423

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 306 GSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQWVVAGADD 431
           G   IW+ ++ + V+SF V +  + + +F      +VAG+D+
Sbjct: 250 GYTYIWDSRSPSAVQSFYVNDSDINALRFFKDGMSIVAGSDN 291

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>YMM1_CAEEL (P34489) Hypothetical protein K01B6.1|
          Length = 732

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 24/99 (24%), Positives = 42/99 (42%)
 Frame = +2

Query: 86  REAGHPRGSASHAPAPTNPLGTSSSRGSRFGALPSRHNAAPVGYQEEARAEVGEGQVRGS 265
           R  G P    S   +PT+P      RGS+  +LPSR N      Q +  A + + Q + +
Sbjct: 230 RGRGRPMQGRSSPKSPTSPT-QPGRRGSQASSLPSRRNTVS---QNDLLATLQQHQQQQA 285

Query: 266 ASDRAMDFVESLLGECLHLELPNADNGEII*SHRVTGSF 382
           A     +   + L       L N +N  ++ +++   +F
Sbjct: 286 AFHPLRNLRFNPLQSIFPAVLANNNNNSVLATNKHVNNF 324

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>GBLP_NEUCR (Q01369) Guanine nucleotide-binding protein beta subunit-like|
           protein (Cross-pathway control WD-repeat protein cpc-2)
          Length = 316

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = +3

Query: 219 KRKLAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIA 398
           KR+L   S  V    +     + LS+ +  ++ +W   T T  + F      V S  F A
Sbjct: 56  KRRLHGHSHIVSDCVISSDGAYALSASWDKTLRLWELSTGTTTRRFVGHTNDVLSVSFSA 115

Query: 399 RKQWVVAGADD 431
             + +V+G+ D
Sbjct: 116 DNRQIVSGSRD 126

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>PRP19_RAT (Q9JMJ4) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog) (Neuronal|
           differentiation-related gene protein)
          Length = 504

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/68 (20%), Positives = 31/68 (45%)
 Frame = +3

Query: 228 LAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQ 407
           L   +++V S   HP++  + S+    ++ IW+    + V+     E  V      A   
Sbjct: 260 LKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNTSCVQVVRAHESAVTGLSLHATGD 319

Query: 408 WVVAGADD 431
           ++++ +DD
Sbjct: 320 YLLSSSDD 327

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>PRP19_MOUSE (Q99KP6) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog) (Nuclear|
           matrix protein 200) (Nuclear matrix protein SNEV)
          Length = 504

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/68 (20%), Positives = 31/68 (45%)
 Frame = +3

Query: 228 LAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQ 407
           L   +++V S   HP++  + S+    ++ IW+    + V+     E  V      A   
Sbjct: 260 LKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNTSCVQVVRAHESAVTGLSLHATGD 319

Query: 408 WVVAGADD 431
           ++++ +DD
Sbjct: 320 YLLSSSDD 327

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>PRP19_HUMAN (Q9UMS4) Pre-mRNA-splicing factor 19 (PRP19/PSO4 homolog) (Nuclear|
           matrix protein 200) (hPso4)
          Length = 504

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/68 (20%), Positives = 31/68 (45%)
 Frame = +3

Query: 228 LAQRSERVKSADLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSAKFIARKQ 407
           L   +++V S   HP++  + S+    ++ IW+    + V+     E  V      A   
Sbjct: 260 LKGHTKKVTSVVFHPSQDLVFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGD 319

Query: 408 WVVAGADD 431
           ++++ +DD
Sbjct: 320 YLLSSSDD 327


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,408,400
Number of Sequences: 219361
Number of extensions: 884852
Number of successful extensions: 3314
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 3051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3309
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result