>CL011_MOUSE (Q8QZV7) Protein C12orf11 homolog|
          Length = 732

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
 Frame = +2

Query: 203 LDALRESNMDPNETAQKLL-------NQDPFHEVKRKRDKKRESAVQKNCTETTAQGEHG 361
           L+ L  +++  +E  Q++L       ++ P  E ++KR +KRE    K+     A  EHG
Sbjct: 536 LETLVRAHISNSEKHQRVLECLMACRSKPPEEEERKKRGRKREDREDKS---EQAGKEHG 592

Query: 362 TQRTKPHTQRVEIDQRRAHNQGPTREFRVVRDN 460
           T++ +P   R++    R   +    E  V++D+
Sbjct: 593 TEKARPDADRLKGILERGKEE--LAEAEVIKDS 623

>WAPL_DROME (Q9W517) Protein wings apart-like (Protein parallel sister|
           chromatids)
          Length = 1741

 Score = 32.0 bits (71), Expect = 0.79
 Identities = 22/82 (26%), Positives = 35/82 (42%)
 Frame = +2

Query: 131 PPTAIDSTVQSIKEVVGGHSEADILDALRESNMDPNETAQKLLNQDPFHEVKRKRDKKRE 310
           PPTA DS V      VGG S  D  +  +  +++PNE  +         E + + D++ E
Sbjct: 405 PPTAADS-VDGSSAAVGGASAGDSFEERKSQSLEPNEDEE---------EEEEEEDEEEE 454

Query: 311 SAVQKNCTETTAQGEHGTQRTK 376
                 CT   +  +   +R K
Sbjct: 455 PPEINYCTVKISPDKPPKERLK 476

>TRPA_VIBPA (P22095) Tryptophan synthase alpha chain (EC 4.2.1.20)|
          Length = 268

 Score = 32.0 bits (71), Expect = 0.79
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +2

Query: 128 APPTAIDSTVQSIKEVVGGH----SEADILDALRESNMDPNETAQKL 256
           APPTA D T++ + E+ GG+    S A +  A  ++NM  +   +KL
Sbjct: 154 APPTASDETLKQVSELGGGYTYLLSRAGVTGAETKANMPVDHMLEKL 200

>HAS1_DEBHA (Q6BH93) ATP-dependent RNA helicase HAS1 (EC 3.6.1.-)|
          Length = 568

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
 Frame = +2

Query: 131 PPTAIDSTVQSIKEVVGGHSEADILDALRESNMDPNETAQKLLNQDPFHEVKRKRDKKRE 310
           P   ++S  +  +E     SE+D    + E + D +E A+ L   D   + + K+DKK+E
Sbjct: 20  PSKKVESRKREHEEESSDSSESDNEKLVEELDDDFDEVAELL--GDDIKDPEAKKDKKKE 77

Query: 311 SAVQ-----KNCTETTAQGEH 358
             +Q     +  T+ TA+  H
Sbjct: 78  KKIQEEERTRELTKPTAESNH 98

>TENA_BACSU (P25052) Thiaminase-2 (EC 3.5.99.2) (Thiaminase II)|
           (Transcriptional activator tenA)
          Length = 236

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +2

Query: 110 DTKAARAPPTAIDSTVQSIKEVVGGHSEADILDALRESNMDPNETAQKLLNQDPFHEVKR 289
           + KA +  PTA   T    + V+ G+  A+IL AL        E  +KLL+ DP H + +
Sbjct: 99  ERKAFKPSPTAYSYTSHMYRSVLSGNF-AEILAALLPCYWLYYEVGEKLLHCDPGHPIYQ 157

Query: 290 K 292
           K
Sbjct: 158 K 158

>YAFA_SCHPO (Q09863) Hypothetical protein C29E6.10c in chromosome I|
          Length = 1085

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +2

Query: 215 RESNMDPNETAQKLLNQDPFHEVKRKRDKKR-ESAVQKNCTETTAQGEHGTQRTKPHTQR 391
           RE+     + AQK L      E ++KR+++R +   +K   E   Q     Q+ K   ++
Sbjct: 615 REAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKEREKK 674

Query: 392 VEIDQRRAHNQGPTREFRV 448
           ++  Q+ A  +   RE R+
Sbjct: 675 LKKQQQEADREKMAREQRL 693

>RR4_GUITH (P17072) Chloroplast 30S ribosomal protein S4|
          Length = 200

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 320 QKNCTETTAQGEHGTQRTKP--HTQRVEIDQRRAHNQGPTRE 439
           +K  T T+  G+HGTQ  KP  +  R+E  Q+   N G T +
Sbjct: 23  RKTTTRTSRPGQHGTQARKPSEYAIRLEEKQKLRFNYGLTEK 64

>TRPA_VIBVY (Q7MM57) Tryptophan synthase alpha chain (EC 4.2.1.20)|
          Length = 268

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +2

Query: 128 APPTAIDSTVQSIKEVVGGH----SEADILDALRESNMDPNETAQKL 256
           APPTA D T++ + ++ GG+    S A +  A  ++NM   +   KL
Sbjct: 154 APPTASDETLKQVSQLGGGYTYLLSRAGVTGAETKANMPVGDMLAKL 200

>TRPA_VIBVU (Q8D8B1) Tryptophan synthase alpha chain (EC 4.2.1.20)|
          Length = 268

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +2

Query: 128 APPTAIDSTVQSIKEVVGGH----SEADILDALRESNMDPNETAQKL 256
           APPTA D T++ + ++ GG+    S A +  A  ++NM   +   KL
Sbjct: 154 APPTASDETLKQVSQLGGGYTYLLSRAGVTGAETKANMPVGDMLAKL 200

>AHI1_MOUSE (Q8K3E5) Jouberin (Abelson helper integration site 1 protein)|
           (AHI-1)
          Length = 1047

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
 Frame = +2

Query: 113 TKAARAPPTAIDSTVQSIKEVVGGHSEADILDALRESNMDPNETAQKLLNQDPFHEVKRK 292
           TK   +P    DS V+  ++  G   ++  ++ +     D + T  +  N  P    K K
Sbjct: 99  TKPESSPSDVCDSAVEGEQKKEGTPEDSQHMEGICSREQDVDATVPE--NAKP----KPK 152

Query: 293 RDKKRESAVQKNCTETTAQGEHG-TQRTKP 379
           + KK+  AV  +  +T   G H  T R  P
Sbjct: 153 KTKKKTKAVSNDNEDTNGDGVHEITSRDSP 182

>SON_MOUSE (Q9QX47) SON protein|
          Length = 2404

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 16/82 (19%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
 Frame = +2

Query: 215  RESNMDPNETAQKLLNQDPFHEVKRKRDKKRESAVQKNCTETTAQGEHGTQRTKPHT--- 385
            R  +      +++   + P H  K +  K++ S+ + N     A+    ++R++ HT   
Sbjct: 1862 RSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKAARARSRTPSRRSRSHTPSR 1921

Query: 386  --QRVEIDQRRAHNQGPTREFR 445
              + + + +RR+ +  P+R  R
Sbjct: 1922 RRRSISVGRRRSFSISPSRRSR 1943

>TRPA_VIBME (Q9RCE7) Tryptophan synthase alpha chain (EC 4.2.1.20)|
          Length = 268

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +2

Query: 128 APPTAIDSTVQSIKEVVGGH----SEADILDALRESNMDPNETAQKL 256
           APPTA D T+QS+ E+  G+    S + +  A  ++NM  +   ++L
Sbjct: 152 APPTASDETLQSVAELGSGYTYLLSRSGVTGAETKANMPVHALLERL 198

>ZDS1_YEAST (P50111) Protein ZDS1 (Protein NRC1) (RT2GS1)|
          Length = 915

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 293 RDKKRESAVQKNCTETTAQGEHGTQRTKPHTQRVEIDQRRAHNQGPTRE 439
           RD++ E A +KN   +    E   Q+   H Q+   D+++A  Q P +E
Sbjct: 713 RDREEEEAKKKNKKRSNTT-EISNQQHSKHVQKENTDEQKAQLQAPAQE 760

>THTR_SACER (P16385) Putative thiosulfate sulfurtransferase (EC 2.8.1.1)|
           (Rhodanese-like protein)
          Length = 281

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
 Frame = +2

Query: 182 GHSEADILDALRE---------SNMDPNETAQKLLNQDPFHEVKRKRDKKRESAVQKNCT 334
           GHS+  +LD  R+         +  +PN  A     Q+P   ++  RD+  ++   KN  
Sbjct: 102 GHSDVKLLDGGRKKWELDGRELTKEEPNRAATAYKAQEPDASIRAFRDEVVDAIGNKNLV 161

Query: 335 ETTAQGEHGTQRTKPHTQRVEIDQRRAH 418
           +  +  E   +   P     E  QR  H
Sbjct: 162 DVRSPDEFAGKLLAPAHLPQESAQRAGH 189

>GLYA_RICCN (Q92GH7) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 420

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = +2

Query: 152 TVQSIKE---VVGGHSEADILDALRESNMDPNETAQKLLNQ 265
           T +  KE   V+ GH  ADILD L+ +N D +   QK+LN+
Sbjct: 369 TTRGFKEKDFVLVGHMVADILDGLK-NNEDNSALEQKVLNE 408

>NKTR_HUMAN (P30414) NK-tumor recognition protein (Natural-killer cells|
           cyclophilin-related protein) (NK-TR protein)
          Length = 1462

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
 Frame = +2

Query: 158 QSIKEVVGGHSEADILDALRESNMDPNETAQKLLNQDPFHEVKRKRDKKRESAVQ----- 322
           +SIK+V     +        +S+ + + +++     +  HE  R+R  KR   V+     
Sbjct: 179 KSIKDVFEKKRKKPTHSEGSDSSSNSSSSSESSSESELEHERSRRRKHKRRPKVKRSKKR 238

Query: 323 -KNCTETTAQGEHGTQRTKPHTQRVEIDQRRAHNQGPTREFRVVR 454
            K  + +           K H++R + +++R+ +    RE  VVR
Sbjct: 239 RKEASSSEEPRNKHAMNPKGHSERSDTNEKRSVDSSAKREKPVVR 283

>CROP_MOUSE (Q5SUF2) Cisplatin resistance-associated overexpressed protein|
          Length = 432

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 12/110 (10%)
 Frame = +2

Query: 143 IDSTVQSIKEVVGGHSEADILDAL------------RESNMDPNETAQKLLNQDPFHEVK 286
           I +TV+ +KE +   +E    D              +E   +  E  +K   ++   E +
Sbjct: 223 IKATVEELKEKLRKRTEEPDRDERLKKEKQEREEREKEREREREERERKRRREEEEREKE 282

Query: 287 RKRDKKRESAVQKNCTETTAQGEHGTQRTKPHTQRVEIDQRRAHNQGPTR 436
           R RD++R    +     ++   +    R++ H +    D+RR+ ++   R
Sbjct: 283 RARDRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRDRRRSRSRDRRR 332

>TNIK_MOUSE (P83510) Traf2 and NCK-interacting kinase (EC 2.7.11.1) (Fragments)|
          Length = 916

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
 Frame = +2

Query: 173 VVGGHSEADILDALRESNM---DPNETAQKLLNQDPFHEVKRKRDKKRESAVQKNCTETT 343
           +V  HS+    + L +       PNE   ++  +D     K+KR +K E+  + + +E  
Sbjct: 270 LVKNHSQRPATEQLMKHPFIRDQPNERQVRIQLKDHIDRTKKKRGEKDETEYEYSGSECK 329

Query: 344 AQGE----HGTQRTKPHTQR-VEIDQRRAHNQGPTREFRVVR 454
           ++G     H   + KP   R +    R A      +E R +R
Sbjct: 330 SEGSPVLPHEPSKVKPEESRDITRPSRPADLTALAKELRELR 371


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,462,191
Number of Sequences: 219361
Number of extensions: 785443
Number of successful extensions: 3270
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3267
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)