Clone Name | bastl04e08 |
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Clone Library Name | barley_pub |
>dbj|AK121282.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108L12, full insert sequence Length = 2972 Score = 252 bits (127), Expect = 9e-64 Identities = 243/279 (87%), Gaps = 2/279 (0%) Strand = Plus / Plus Query: 137 acggcgatcgactccaccgtccagtccatcaaggaggtcgtcggcggccactccgaggcc 196 ||||||||| | |||||| ||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 223 acggcgatccagtccaccatccagtctatcaaggaggtcgtcggcggccactccgacgcc 282 Query: 197 gacatcctagacgccctccgcgagtccaacatggaccccaacgagacggcgcagaagctc 256 |||||| | |||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 283 gacatctacgccgccctccgcgagtgcaacatggaccccaacgagaccacgcagaagctc 342 Query: 257 ctcaaccaagatccatttcatgaagtgaaacggaaaagggacaagaaaagagagagtgct 316 |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct: 343 ctcaaccaagatccatttcatgaagtgaaaagaaaaagggacaagaaaagagagagtgct 402 Query: 317 gtccagaagaactg-tactgagaccacagcacaaggtgagcacggcacacaacggacaaa 375 | ||||| ||||| | |||| | | ||||||| ||||||| | |||| |||| || Sbjct: 403 ggacagaa-aactgttcctgatgcttctgcacaagctgagcacaactcacagtggacgaa 461 Query: 376 gccacacactcaaagggttgagatcgatcaaagaagagc 414 ||||| ||| ||||||||||||| || ||||||||||| Sbjct: 462 gccacgcacacaaagggttgagaatgaccaaagaagagc 500
>dbj|AK099498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013028A11, full insert sequence Length = 2906 Score = 252 bits (127), Expect = 9e-64 Identities = 243/279 (87%), Gaps = 2/279 (0%) Strand = Plus / Plus Query: 137 acggcgatcgactccaccgtccagtccatcaaggaggtcgtcggcggccactccgaggcc 196 ||||||||| | |||||| ||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 157 acggcgatccagtccaccatccagtctatcaaggaggtcgtcggcggccactccgacgcc 216 Query: 197 gacatcctagacgccctccgcgagtccaacatggaccccaacgagacggcgcagaagctc 256 |||||| | |||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 217 gacatctacgccgccctccgcgagtgcaacatggaccccaacgagaccacgcagaagctc 276 Query: 257 ctcaaccaagatccatttcatgaagtgaaacggaaaagggacaagaaaagagagagtgct 316 |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct: 277 ctcaaccaagatccatttcatgaagtgaaaagaaaaagggacaagaaaagagagagtgct 336 Query: 317 gtccagaagaactg-tactgagaccacagcacaaggtgagcacggcacacaacggacaaa 375 | ||||| ||||| | |||| | | ||||||| ||||||| | |||| |||| || Sbjct: 337 ggacagaa-aactgttcctgatgcttctgcacaagctgagcacaactcacagtggacgaa 395 Query: 376 gccacacactcaaagggttgagatcgatcaaagaagagc 414 ||||| ||| ||||||||||||| || ||||||||||| Sbjct: 396 gccacgcacacaaagggttgagaatgaccaaagaagagc 434
>gb|AF466199.1| Sorghum bicolor putative receptor protein kinase, aminoalcoholphosphotransferase, putative growth-regulating factor 1, putative GAG-POL precursor, putative GAG-POL precursor, putative RIRE2 orf3, putative anthocyanin regulatory C1, putative protein T30F21.6, putative copia polyprotein, putative copia polyprotein, putative protein NP_196765.1, and gb protein genes, complete cds; and putative zinc finger protein gene, partial cds Length = 144159 Score = 176 bits (89), Expect = 4e-41 Identities = 110/117 (94%) Strand = Plus / Plus Query: 150 ccaccgtccagtccatcaaggaggtcgtcggcggccactccgaggccgacatcctagacg 209 ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 117581 ccaccatccagtcgatcaaggaggtcgtcggcggccactccgacgccgacatcctggaca 117640 Query: 210 ccctccgcgagtccaacatggaccccaacgagacggcgcagaagctcctcaaccaag 266 |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct: 117641 ccctccgcgagtccaacatggaccccaacgagacggcgcagaagctgctcaatcaag 117697 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 265 agatccatttcatgaagtgaaacggaaaagggacaa 300 |||||| ||||||||||||||| ||||||||||||| Sbjct: 118297 agatccttttcatgaagtgaaaaggaaaagggacaa 118332
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 163 bits (82), Expect = 6e-37 Identities = 118/130 (90%) Strand = Plus / Plus Query: 137 acggcgatcgactccaccgtccagtccatcaaggaggtcgtcggcggccactccgaggcc 196 ||||||||| | |||||| ||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 5370632 acggcgatccagtccaccatccagtctatcaaggaggtcgtcggcggccactccgacgcc 5370691 Query: 197 gacatcctagacgccctccgcgagtccaacatggaccccaacgagacggcgcagaagctc 256 |||||| | |||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 5370692 gacatctacgccgccctccgcgagtgcaacatggaccccaacgagaccacgcagaagctc 5370751 Query: 257 ctcaaccaag 266 |||||||||| Sbjct: 5370752 ctcaaccaag 5370761 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Plus Query: 265 agatccatttcatgaagtgaaacggaaaagggacaagaaaagagag 310 |||||||||||||||||||||| | ||||||||||||||||||||| Sbjct: 5371393 agatccatttcatgaagtgaaaagaaaaagggacaagaaaagagag 5371438 Score = 46.1 bits (23), Expect = 0.10 Identities = 59/71 (83%) Strand = Plus / Plus Query: 344 gcacaaggtgagcacggcacacaacggacaaagccacacactcaaagggttgagatcgat 403 ||||||| ||||||| | |||| |||| ||||||| ||| ||||||||||||| || Sbjct: 5372090 gcacaagctgagcacaactcacagtggacgaagccacgcacacaaagggttgagaatgac 5372149 Query: 404 caaagaagagc 414 ||||||||||| Sbjct: 5372150 caaagaagagc 5372160
>dbj|AP005652.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0015B15 Length = 123083 Score = 163 bits (82), Expect = 6e-37 Identities = 118/130 (90%) Strand = Plus / Plus Query: 137 acggcgatcgactccaccgtccagtccatcaaggaggtcgtcggcggccactccgaggcc 196 ||||||||| | |||||| ||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 112144 acggcgatccagtccaccatccagtctatcaaggaggtcgtcggcggccactccgacgcc 112203 Query: 197 gacatcctagacgccctccgcgagtccaacatggaccccaacgagacggcgcagaagctc 256 |||||| | |||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 112204 gacatctacgccgccctccgcgagtgcaacatggaccccaacgagaccacgcagaagctc 112263 Query: 257 ctcaaccaag 266 |||||||||| Sbjct: 112264 ctcaaccaag 112273 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Plus Query: 265 agatccatttcatgaagtgaaacggaaaagggacaagaaaagagag 310 |||||||||||||||||||||| | ||||||||||||||||||||| Sbjct: 112905 agatccatttcatgaagtgaaaagaaaaagggacaagaaaagagag 112950 Score = 46.1 bits (23), Expect = 0.10 Identities = 59/71 (83%) Strand = Plus / Plus Query: 344 gcacaaggtgagcacggcacacaacggacaaagccacacactcaaagggttgagatcgat 403 ||||||| ||||||| | |||| |||| ||||||| ||| ||||||||||||| || Sbjct: 113602 gcacaagctgagcacaactcacagtggacgaagccacgcacacaaagggttgagaatgac 113661 Query: 404 caaagaagagc 414 ||||||||||| Sbjct: 113662 caaagaagagc 113672
>dbj|AP004754.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0529B09 Length = 138188 Score = 163 bits (82), Expect = 6e-37 Identities = 118/130 (90%) Strand = Plus / Plus Query: 137 acggcgatcgactccaccgtccagtccatcaaggaggtcgtcggcggccactccgaggcc 196 ||||||||| | |||||| ||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 1566 acggcgatccagtccaccatccagtctatcaaggaggtcgtcggcggccactccgacgcc 1625 Query: 197 gacatcctagacgccctccgcgagtccaacatggaccccaacgagacggcgcagaagctc 256 |||||| | |||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 1626 gacatctacgccgccctccgcgagtgcaacatggaccccaacgagaccacgcagaagctc 1685 Query: 257 ctcaaccaag 266 |||||||||| Sbjct: 1686 ctcaaccaag 1695 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Plus Query: 265 agatccatttcatgaagtgaaacggaaaagggacaagaaaagagag 310 |||||||||||||||||||||| | ||||||||||||||||||||| Sbjct: 2327 agatccatttcatgaagtgaaaagaaaaagggacaagaaaagagag 2372 Score = 46.1 bits (23), Expect = 0.10 Identities = 59/71 (83%) Strand = Plus / Plus Query: 344 gcacaaggtgagcacggcacacaacggacaaagccacacactcaaagggttgagatcgat 403 ||||||| ||||||| | |||| |||| ||||||| ||| ||||||||||||| || Sbjct: 3024 gcacaagctgagcacaactcacagtggacgaagccacgcacacaaagggttgagaatgac 3083 Query: 404 caaagaagagc 414 ||||||||||| Sbjct: 3084 caaagaagagc 3094
>gb|AY530950.1| Zea mays putative zinc finger protein (Z438D03.1), unknown (Z438D03.5), epsilon-COP (Z438D03.6), putative kinase (Z438D03.7), unknown (Z438D03.25), and C1-B73 (Z438D03.27) genes, complete cds Length = 185988 Score = 151 bits (76), Expect = 2e-33 Identities = 118/132 (89%) Strand = Plus / Minus Query: 135 ccacggcgatcgactccaccgtccagtccatcaaggaggtcgtcggcggccactccgagg 194 |||||||||| | || ||| |||| || |||||||||||||||| |||||||||||| | Sbjct: 36405 ccacggcgatacagtcgaccatccaatcgatcaaggaggtcgtcgtcggccactccgacg 36346 Query: 195 ccgacatcctagacgccctccgcgagtccaacatggaccccaacgagacggcgcagaagc 254 |||||||| | ||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 36345 ccgacatcttggacaccctccgcgaatccaacatggaccccaacgagacggcgcagaagc 36286 Query: 255 tcctcaaccaag 266 | |||||||||| Sbjct: 36285 tgctcaaccaag 36274 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 265 agatccatttcatgaagtgaaacggaaaagggacaagaa 303 |||||||||||||||||| ||| | |||||||||||||| Sbjct: 35737 agatccatttcatgaagtaaaaagaaaaagggacaagaa 35699 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 437 gaatttcgggtagtgagggacaacaga 463 ||||||||||| ||||||||||||||| Sbjct: 34528 gaatttcgggttgtgagggacaacaga 34502
>ref|XM_320053.2| Anopheles gambiae str. PEST ENSANGP00000012258 (ENSANGG00000009769), partial mRNA Length = 2583 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 19 ggcaccacccccaccgcccccgg 41 ||||||||||||||||||||||| Sbjct: 2358 ggcaccacccccaccgcccccgg 2380
>ref|XM_553211.1| Anopheles gambiae str. PEST ENSANGP00000025467 (ENSANGG00000009769), partial mRNA Length = 3120 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 19 ggcaccacccccaccgcccccgg 41 ||||||||||||||||||||||| Sbjct: 2892 ggcaccacccccaccgcccccgg 2914
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 ccggcgtagcgttcggcgatc 58 ||||||||||||||||||||| Sbjct: 1653740 ccggcgtagcgttcggcgatc 1653760
>emb|BX056440.1|CNS09FPO Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC35CH08 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 482 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 283 gaaacggaaaagggacaagaaaaga 307 ||||||||||||||| ||||||||| Sbjct: 22 gaaacggaaaagggagaagaaaaga 46
>emb|AL663001.3|OSJN00197 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022P19, complete sequence Length = 135836 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 288 ggaaaagggacaagaaaagagagag 312 |||||||||| |||||||||||||| Sbjct: 75043 ggaaaagggaaaagaaaagagagag 75067
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 288 ggaaaagggacaagaaaagagagag 312 |||||||||| |||||||||||||| Sbjct: 7347673 ggaaaagggaaaagaaaagagagag 7347697
>emb|AJ252250.1|AAU252250 Androctonus australis ssp. garzonii 5.8S rRNA gene, internal transcribed spacer (ITS) and internal transcribed spacer 2 (ITS2) Length = 1162 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 289 gaaaagggacaagaaaagagagagt 313 ||||||||| ||||||||||||||| Sbjct: 1142 gaaaagggagaagaaaagagagagt 1118
>emb|CR382288.10| Zebrafish DNA sequence from clone CH211-234C14 in linkage group 25, complete sequence Length = 146063 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 tcaaccaagatccatttcat 277 |||||||||||||||||||| Sbjct: 40112 tcaaccaagatccatttcat 40093
>dbj|AP007164.1| Aspergillus oryzae RIB40 genomic DNA, SC111 Length = 2356219 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 agggacaagaaaagagagag 312 |||||||||||||||||||| Sbjct: 396434 agggacaagaaaagagagag 396453
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 212 ctccgcgagtccaacatggaccccaacgagac 243 |||||||| | ||||||||| ||||||||||| Sbjct: 4500844 ctccgcgaatgcaacatggatcccaacgagac 4500875
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 tcaaggaggtcgtcggcggc 184 |||||||||||||||||||| Sbjct: 2525713 tcaaggaggtcgtcggcggc 2525694
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 212 ctccgcgagtccaacatggaccccaacgagac 243 |||||||| | ||||||||| ||||||||||| Sbjct: 44218 ctccgcgaatgcaacatggatcccaacgagac 44249
>dbj|AP006157.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1077E10 Length = 100821 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 212 ctccgcgagtccaacatggaccccaacgagac 243 |||||||| | ||||||||| ||||||||||| Sbjct: 73332 ctccgcgaatgcaacatggatcccaacgagac 73363
>dbj|AK122268.1| Mus musculus mRNA for mKIAA0385 protein Length = 5945 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 ccacccccaccgcccccggc 42 |||||||||||||||||||| Sbjct: 3064 ccacccccaccgcccccggc 3083
>dbj|AK105353.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-B01, full insert sequence Length = 647 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 212 ctccgcgagtccaacatggaccccaacgagac 243 |||||||| | ||||||||| ||||||||||| Sbjct: 364 ctccgcgaatgcaacatggatcccaacgagac 395
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 cgccgcccacggcgatcgac 148 |||||||||||||||||||| Sbjct: 1369949 cgccgcccacggcgatcgac 1369930
>gb|BC050131.1| Mus musculus zinc finger, MYM-type 3, mRNA (cDNA clone IMAGE:5367958), containing frame-shift errors Length = 5196 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 ccacccccaccgcccccggc 42 |||||||||||||||||||| Sbjct: 2571 ccacccccaccgcccccggc 2590
>emb|AL831722.8| Mouse DNA sequence from clone RP23-312D15 on chromosome X, complete sequence Length = 148564 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ccacccccaccgcccccggc 42 |||||||||||||||||||| Sbjct: 17012 ccacccccaccgcccccggc 16993
>emb|Y00055.1|CFRNLSU Crithidia fasciculata ribosomal DNA repeat (complete) Length = 11315 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 ggacaagaaaagagagagtg 314 |||||||||||||||||||| Sbjct: 6748 ggacaagaaaagagagagtg 6729 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,884,618 Number of Sequences: 3902068 Number of extensions: 2884618 Number of successful extensions: 61980 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61767 Number of HSP's gapped (non-prelim): 213 length of query: 463 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 441 effective length of database: 17,147,199,772 effective search space: 7561915099452 effective search space used: 7561915099452 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)