ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl04e07 |
|---|---|
| Clone Library Name | barley_pub |
>ETR1_PELHO (Q9XH58) Ethylene receptor 1 (EC 2.7.13.3) (PhETR1)| Length = 740 Score = 41.6 bits (96), Expect = 5e-04 Identities = 18/33 (54%), Positives = 25/33 (75%), Gaps = 1/33 (3%) Frame = +1 Query: 238 WSMDNIF-RWQKVSDLLIAAAYFSIPLEILYFV 333 W D++ ++Q +SD IA AYFSIPLE++YFV Sbjct: 11 WPADDLLMKYQYISDFFIAVAYFSIPLELIYFV 43
>ETR1_BRAOL (O49230) Ethylene receptor (EC 2.7.13.3)| Length = 735 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Frame = +1 Query: 238 WSMDNIF-RWQKVSDLLIAAAYFSIPLEILYFV 333 W D + ++Q +SD IA AYFSIPLE++YFV Sbjct: 11 WPADELLMKYQYISDFFIAVAYFSIPLELIYFV 43
>ETR2_PELHO (Q9XH57) Ethylene receptor 2 (EC 2.7.13.3) (PhETR2)| Length = 741 Score = 40.8 bits (94), Expect = 8e-04 Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Frame = +1 Query: 238 WSMDNIF-RWQKVSDLLIAAAYFSIPLEILYFV 333 W D + ++Q +SD IA AYFSIPLE++YFV Sbjct: 11 WPADELLMKYQYISDFFIAIAYFSIPLELIYFV 43
>ETR1_MALDO (O81122) Ethylene receptor (EC 2.7.13.3)| Length = 741 Score = 40.8 bits (94), Expect = 8e-04 Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Frame = +1 Query: 238 WSMDNIF-RWQKVSDLLIAAAYFSIPLEILYFV 333 W D + ++Q +SD IA AYFSIPLE++YFV Sbjct: 11 WPADELLMKYQYISDFFIALAYFSIPLELIYFV 43
>ETR1_CUCSA (Q9SSY6) Ethylene receptor (EC 2.7.13.3) (CS-ETR1)| Length = 740 Score = 40.8 bits (94), Expect = 8e-04 Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Frame = +1 Query: 238 WSMDNIF-RWQKVSDLLIAAAYFSIPLEILYFV 333 W D + ++Q +SD IA AYFSIPLE++YFV Sbjct: 11 WPADELLMKYQYISDFFIALAYFSIPLELIYFV 43
>ETR1_CUCMR (O82436) Ethylene receptor (EC 2.7.13.3) (MEETR1) (Cm-ETR1)| Length = 740 Score = 40.8 bits (94), Expect = 8e-04 Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Frame = +1 Query: 238 WSMDNIF-RWQKVSDLLIAAAYFSIPLEILYFV 333 W D + ++Q +SD IA AYFSIPLE++YFV Sbjct: 11 WPADELLMKYQYISDFFIALAYFSIPLELIYFV 43
>ETR1_PRUPE (Q9M7M1) Ethylene receptor (EC 2.7.13.3)| Length = 738 Score = 40.8 bits (94), Expect = 8e-04 Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Frame = +1 Query: 238 WSMDNIF-RWQKVSDLLIAAAYFSIPLEILYFV 333 W D + ++Q +SD IA AYFSIPLE++YFV Sbjct: 11 WPADELLMKYQYISDFFIALAYFSIPLELIYFV 43
>ETR1_ARATH (P49333) Ethylene receptor (EC 2.7.13.3)| Length = 738 Score = 40.8 bits (94), Expect = 8e-04 Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Frame = +1 Query: 238 WSMDNIF-RWQKVSDLLIAAAYFSIPLEILYFV 333 W D + ++Q +SD IA AYFSIPLE++YFV Sbjct: 11 WPADELLMKYQYISDFFIAIAYFSIPLELIYFV 43
>ETR1_TOBAC (O48929) Ethylene receptor (EC 2.7.13.3) (NT-ETR1)| Length = 738 Score = 40.0 bits (92), Expect = 0.001 Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Frame = +1 Query: 238 WSMDNIF-RWQKVSDLLIAAAYFSIPLEILYFV 333 W D + ++Q +SD IA AYFSIP+E++YFV Sbjct: 10 WPADELLMKYQYISDFFIAVAYFSIPIELVYFV 42
>ETR1_LYCES (Q41342) Ethylene receptor 1 (EC 2.7.13.3) (LeETR1)| Length = 754 Score = 39.7 bits (91), Expect = 0.002 Identities = 16/29 (55%), Positives = 23/29 (79%) Frame = +1 Query: 247 DNIFRWQKVSDLLIAAAYFSIPLEILYFV 333 D + ++Q +SD IA AYFSIP+E++YFV Sbjct: 30 DLLMKYQYISDFFIALAYFSIPVELIYFV 58
>ETR1_PASED (Q9ZWL6) Ethylene receptor (EC 2.7.13.3) (PE-ETR1)| Length = 738 Score = 39.7 bits (91), Expect = 0.002 Identities = 16/27 (59%), Positives = 22/27 (81%) Frame = +1 Query: 253 IFRWQKVSDLLIAAAYFSIPLEILYFV 333 + ++Q +SD IA AYFSIPLE++YFV Sbjct: 17 LMKYQYISDFFIALAYFSIPLELIYFV 43
>ETR2_LYCES (O49187) Ethylene receptor 2 (EC 2.7.13.3) (LeETR2)| Length = 736 Score = 38.9 bits (89), Expect = 0.003 Identities = 15/27 (55%), Positives = 22/27 (81%) Frame = +1 Query: 253 IFRWQKVSDLLIAAAYFSIPLEILYFV 333 + ++Q +SD IA AYFSIP+E++YFV Sbjct: 16 LMKYQYISDFFIAVAYFSIPIELVYFV 42
>LIZ1_SCHPO (O43000) Pantothenate transporter liz1| Length = 514 Score = 31.2 bits (69), Expect = 0.66 Identities = 16/39 (41%), Positives = 18/39 (46%) Frame = +2 Query: 2 WCVPDFAFFPGYLAQSVCH*QDCVWRSWTGWRPRDSDAE 118 W VPD A F Y A + VW SW RD+D E Sbjct: 349 WNVPDGAKFFAYFASGCTYAGQAVWFSWANDICRDNDQE 387
>CHSS2_MOUSE (Q6IQX7) Chondroitin sulfate synthase 2 (EC 2.4.1.175)| (Glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase II) (N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase II) (EC 2.4.1.226) (Chon Length = 774 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +3 Query: 219 GRHGRVLEHGQHLPVAEGERPADRGGLLQHPARDPL 326 G H LE PV EG+ P R L HP RDP+ Sbjct: 297 GMHYNYLELSPGEPVQEGD-PRFRSALTAHPVRDPV 331
>CXCC1_MOUSE (Q9CWW7) CpG-binding protein (PHD finger and CXXC domain-containing| protein 1) (CXXC finger protein 1) Length = 660 Score = 28.5 bits (62), Expect = 4.3 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = +3 Query: 195 PALQLRRRGRHGRVLEHGQHLPVAEGERPADRGGLLQHPARDPLLRGRA 341 P L++R R + R + + G P D GG + PA DP L+ RA Sbjct: 78 PKLEIRYRHKKCRERDGSERA----GSEPRDEGGGRKRPASDPELQRRA 122
>ISPF_TREDE (Q73KC6) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC| 4.6.1.12) (MECPS) (MECDP-synthase) Length = 161 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +3 Query: 207 LRRRGRHGRVLEHGQHLPVAEGERPADRGGLLQHPARDPLL 329 L R R +++ G H+P +GE+ G +L H D LL Sbjct: 9 LHRLVRGKKLMMGGVHIPFKKGEKAHSDGDVLLHAITDALL 49
>PEX5_ASHGO (Q752X0) Peroxisomal targeting signal receptor (Peroxin-5) (PTS1| receptor) Length = 569 Score = 27.3 bits (59), Expect = 9.5 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +3 Query: 195 PALQLRRRGRHGRVLEHGQHLPVAEG 272 P QL +R + R L+HG H+ + +G Sbjct: 11 PLAQLNKRVQQDRTLQHGSHVNIHQG 36 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,802,289 Number of Sequences: 219361 Number of extensions: 462678 Number of successful extensions: 1560 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1525 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1560 length of database: 80,573,946 effective HSP length: 92 effective length of database: 60,392,734 effective search space used: 1449425616 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
