Clone Name | bastl04e07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_468441.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2967 Score = 172 bits (87), Expect = 5e-40 Identities = 111/119 (93%) Strand = Plus / Plus Query: 232 gggttctggagcatggacaacatcttccggtggcagaaggtgagcgacctgctgatcgcg 291 ||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct: 469 gggttgtggagcatggacagcatcttcaggtggcagaaggtgagcgacctgctgatcgcg 528 Query: 292 gcggcctacttcagcatcccgctcgagatcctctacttcgtggccgggctacggcatct 350 |||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct: 529 gcggcctacttctccatcccgctggagatcctctacttcgtcgccgggctccggcatct 587
>gb|AY434735.1| Oryza sativa (indica cultivar-group) putative ethylene receptor (ETR3) mRNA, complete cds Length = 3294 Score = 172 bits (87), Expect = 5e-40 Identities = 111/119 (93%) Strand = Plus / Plus Query: 232 gggttctggagcatggacaacatcttccggtggcagaaggtgagcgacctgctgatcgcg 291 ||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct: 666 gggttgtggagcatggacagcatcttcaggtggcagaaggtgagcgacctgctgatcgcg 725 Query: 292 gcggcctacttcagcatcccgctcgagatcctctacttcgtggccgggctacggcatct 350 |||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct: 726 gcggcctacttctccatcccgctggagatcctctacttcgtcgccgggctccggcatct 784
>gb|AF420318.2| Oryza sativa ethylene receptor-like protein 2 mRNA, complete cds Length = 2511 Score = 172 bits (87), Expect = 5e-40 Identities = 111/119 (93%) Strand = Plus / Plus Query: 232 gggttctggagcatggacaacatcttccggtggcagaaggtgagcgacctgctgatcgcg 291 ||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct: 358 gggttgtggagcatggacagcatcttcaggtggcagaaggtgagcgacctgctgatcgcg 417 Query: 292 gcggcctacttcagcatcccgctcgagatcctctacttcgtggccgggctacggcatct 350 |||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct: 418 gcggcctacttctccatcccgctggagatcctctacttcgtcgccgggctccggcatct 476
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 172 bits (87), Expect = 5e-40 Identities = 111/119 (93%) Strand = Plus / Plus Query: 232 gggttctggagcatggacaacatcttccggtggcagaaggtgagcgacctgctgatcgcg 291 ||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct: 35270965 gggttgtggagcatggacagcatcttcaggtggcagaaggtgagcgacctgctgatcgcg 35271024 Query: 292 gcggcctacttcagcatcccgctcgagatcctctacttcgtggccgggctacggcatct 350 |||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct: 35271025 gcggcctacttctccatcccgctggagatcctctacttcgtcgccgggctccggcatct 35271083 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cgccgctgtggcggcggcgg 178 |||||||||||||||||||| Sbjct: 18288001 cgccgctgtggcggcggcgg 18288020 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 ggcggcggcgggcggtgacg 187 |||||||||||||||||||| Sbjct: 15275773 ggcggcggcgggcggtgacg 15275792
>dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1119_A01 Length = 108727 Score = 172 bits (87), Expect = 5e-40 Identities = 111/119 (93%) Strand = Plus / Plus Query: 232 gggttctggagcatggacaacatcttccggtggcagaaggtgagcgacctgctgatcgcg 291 ||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct: 21299 gggttgtggagcatggacagcatcttcaggtggcagaaggtgagcgacctgctgatcgcg 21358 Query: 292 gcggcctacttcagcatcccgctcgagatcctctacttcgtggccgggctacggcatct 350 |||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct: 21359 gcggcctacttctccatcccgctggagatcctctacttcgtcgccgggctccggcatct 21417
>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0474F11 Length = 139544 Score = 172 bits (87), Expect = 5e-40 Identities = 111/119 (93%) Strand = Plus / Plus Query: 232 gggttctggagcatggacaacatcttccggtggcagaaggtgagcgacctgctgatcgcg 291 ||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct: 83015 gggttgtggagcatggacagcatcttcaggtggcagaaggtgagcgacctgctgatcgcg 83074 Query: 292 gcggcctacttcagcatcccgctcgagatcctctacttcgtggccgggctacggcatct 350 |||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct: 83075 gcggcctacttctccatcccgctggagatcctctacttcgtcgccgggctccggcatct 83133
>ref|XM_468442.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2715 Score = 168 bits (85), Expect = 8e-39 Identities = 106/113 (93%) Strand = Plus / Plus Query: 238 tggagcatggacaacatcttccggtggcagaaggtgagcgacctgctgatcgcggcggcc 297 ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 5 tggagcatggacagcatcttcaggtggcagaaggtgagcgacctgctgatcgcggcggcc 64 Query: 298 tacttcagcatcccgctcgagatcctctacttcgtggccgggctacggcatct 350 |||||| ||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct: 65 tacttctccatcccgctggagatcctctacttcgtcgccgggctccggcatct 117
>dbj|AK111581.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013083A04, full insert sequence Length = 2716 Score = 168 bits (85), Expect = 8e-39 Identities = 106/113 (93%) Strand = Plus / Plus Query: 238 tggagcatggacaacatcttccggtggcagaaggtgagcgacctgctgatcgcggcggcc 297 ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 5 tggagcatggacagcatcttcaggtggcagaaggtgagcgacctgctgatcgcggcggcc 64 Query: 298 tacttcagcatcccgctcgagatcctctacttcgtggccgggctacggcatct 350 |||||| ||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct: 65 tacttctccatcccgctggagatcctctacttcgtcgccgggctccggcatct 117
>dbj|AK111520.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002K22, full insert sequence Length = 2967 Score = 165 bits (83), Expect = 1e-37 Identities = 110/119 (92%) Strand = Plus / Plus Query: 232 gggttctggagcatggacaacatcttccggtggcagaaggtgagcgacctgctgatcgcg 291 ||||| ||||||||||||| ||||||| ||||||| |||||||||||||||||||||||| Sbjct: 469 gggttgtggagcatggacagcatcttcaggtggcacaaggtgagcgacctgctgatcgcg 528 Query: 292 gcggcctacttcagcatcccgctcgagatcctctacttcgtggccgggctacggcatct 350 |||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct: 529 gcggcctacttctccatcccgctggagatcctctacttcgtcgccgggctccggcatct 587
>gb|AY022856.1| Oryza sativa microsatellite MRG5181 containing (CGG)X8, closest to marker C1470, genomic sequence Length = 224 Score = 149 bits (75), Expect = 7e-33 Identities = 93/99 (93%) Strand = Plus / Plus Query: 232 gggttctggagcatggacaacatcttccggtggcagaaggtgagcgacctgctgatcgcg 291 ||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct: 126 gggttgtggagcatggacagcatcttcaggtggcagaaggtgagcgacctgctgatcgcg 185 Query: 292 gcggcctacttcagcatcccgctcgagatcctctacttc 330 |||||||||||| ||||||||| ||||||||||||||| Sbjct: 186 gcggcctacttctccatcccgctggagatcctctacttc 224
>gb|AY359581.1| Zea mays B73 ethylene receptor (ETR40) gene, complete cds Length = 5515 Score = 61.9 bits (31), Expect = 1e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 265 cagaaggtgagcgacctgctgatcgcggcggcctacttcagcatcccgctcgagatcctc 324 |||||||| |||||| | || ||||| |||||||||||| ||||||||||||| | ||| Sbjct: 1908 cagaaggtcagcgacttcctcatcgccgcggcctacttctccatcccgctcgagctgctc 1967 Query: 325 tacttcg 331 ||||||| Sbjct: 1968 tacttcg 1974
>gb|AY359580.1| Zea mays B73 ethylene receptor (ETR9) gene, complete cds Length = 5707 Score = 61.9 bits (31), Expect = 1e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 265 cagaaggtgagcgacctgctgatcgcggcggcctacttcagcatcccgctcgagatcctc 324 |||||||| |||||| | || ||||| |||||||||||| ||||||||||||| | ||| Sbjct: 2336 cagaaggtcagcgacttcctcatcgccgcggcctacttctccatcccgctcgagctgctc 2395 Query: 325 tacttcg 331 ||||||| Sbjct: 2396 tacttcg 2402
>gb|AY359583.1| Zea mays B73 Etr2-like ethylene receptor (ETR61) pseudogene, partial sequence Length = 9532 Score = 61.9 bits (31), Expect = 1e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 265 cagaaggtgagcgacctgctgatcgcggcggcctacttcagcatcccgctcgagatcctc 324 |||||||| |||||| | || ||||| |||||||||||| ||||||||||||| | ||| Sbjct: 5959 cagaaggtcagcgacttcctcatcgccgcggcctacttctccatcccgctcgagctgctc 6018 Query: 325 tacttcg 331 ||||||| Sbjct: 6019 tacttcg 6025
>gb|AY359582.1| Zea mays B73 Etr2-like ethylene receptor (ETR6) pseudogene, partial sequence Length = 8579 Score = 61.9 bits (31), Expect = 1e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 265 cagaaggtgagcgacctgctgatcgcggcggcctacttcagcatcccgctcgagatcctc 324 |||||||| |||||| | || ||||| |||||||||||| ||||||||||||| | ||| Sbjct: 5874 cagaaggtcagcgacttcctcatcgccgcggcctacttctccatcccgctcgagctgctc 5933 Query: 325 tacttcg 331 ||||||| Sbjct: 5934 tacttcg 5940
>gb|AY105084.1| Zea mays PCO124492 mRNA sequence Length = 2949 Score = 61.9 bits (31), Expect = 1e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 265 cagaaggtgagcgacctgctgatcgcggcggcctacttcagcatcccgctcgagatcctc 324 |||||||| |||||| | || ||||| |||||||||||| ||||||||||||| | ||| Sbjct: 304 cagaaggtcagcgacttcctcatcgccgcggcctacttctccatcccgctcgagctgctc 363 Query: 325 tacttcg 331 ||||||| Sbjct: 364 tacttcg 370
>dbj|AB040406.1| Zea mays ZmETR2 mRNA for ethylene receptor homologue, complete cds Length = 2922 Score = 61.9 bits (31), Expect = 1e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 265 cagaaggtgagcgacctgctgatcgcggcggcctacttcagcatcccgctcgagatcctc 324 |||||||| |||||| | || ||||| |||||||||||| ||||||||||||| | ||| Sbjct: 744 cagaaggtcagcgacttcctcatcgccgcggcctacttctccatcccgctcgagctgctc 803 Query: 325 tacttcg 331 ||||||| Sbjct: 804 tacttcg 810
>ref|NM_186923.2| Oryza sativa (japonica cultivar-group), mRNA Length = 2676 Score = 58.0 bits (29), Expect = 2e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 271 gtgagcgacctgctgatcgcggcggcctacttcagcatcccgctcgagatcctctacttc 330 |||||||||||||| ||||||||| ||| | || ||||||||||||| || |||||||| Sbjct: 150 gtgagcgacctgctcatcgcggcgtccttcctctccatcccgctcgagctcttctacttc 209 Query: 331 g 331 | Sbjct: 210 g 210
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 58.0 bits (29), Expect = 2e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 271 gtgagcgacctgctgatcgcggcggcctacttcagcatcccgctcgagatcctctacttc 330 |||||||||||||| ||||||||| ||| | || ||||||||||||| || |||||||| Sbjct: 9040492 gtgagcgacctgctcatcgcggcgtccttcctctccatcccgctcgagctcttctacttc 9040433 Query: 331 g 331 | Sbjct: 9040432 g 9040432
>dbj|AP003756.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1370_E02 Length = 128326 Score = 58.0 bits (29), Expect = 2e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 271 gtgagcgacctgctgatcgcggcggcctacttcagcatcccgctcgagatcctctacttc 330 |||||||||||||| ||||||||| ||| | || ||||||||||||| || |||||||| Sbjct: 30899 gtgagcgacctgctcatcgcggcgtccttcctctccatcccgctcgagctcttctacttc 30840 Query: 331 g 331 | Sbjct: 30839 g 30839
>dbj|AP003755.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1354_H07 Length = 157974 Score = 58.0 bits (29), Expect = 2e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 271 gtgagcgacctgctgatcgcggcggcctacttcagcatcccgctcgagatcctctacttc 330 |||||||||||||| ||||||||| ||| | || ||||||||||||| || |||||||| Sbjct: 91935 gtgagcgacctgctcatcgcggcgtccttcctctccatcccgctcgagctcttctacttc 91876 Query: 331 g 331 | Sbjct: 91875 g 91875
>dbj|AK109593.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-C08, full insert sequence Length = 2676 Score = 58.0 bits (29), Expect = 2e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 271 gtgagcgacctgctgatcgcggcggcctacttcagcatcccgctcgagatcctctacttc 330 |||||||||||||| ||||||||| ||| | || ||||||||||||| || |||||||| Sbjct: 150 gtgagcgacctgctcatcgcggcgtccttcctctccatcccgctcgagctcttctacttc 209 Query: 331 g 331 | Sbjct: 210 g 210
>ref|XM_474620.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2292 Score = 52.0 bits (26), Expect = 0.001 Identities = 77/94 (81%) Strand = Plus / Plus Query: 238 tggagcatggacaacatcttccggtggcagaaggtgagcgacctgctgatcgcggcggcc 297 ||||||| |||||||||| | | || |||| |||||||||| | || ||||| |||| Sbjct: 130 tggagcacggacaacatcctgcaatgccagagggtgagcgacttcctcatcgccatggcc 189 Query: 298 tacttcagcatcccgctcgagatcctctacttcg 331 |||||| ||||||||||||| | |||||||||| Sbjct: 190 tacttctccatcccgctcgagctgctctacttcg 223
>gb|AY136816.2| Oryza sativa (indica cultivar-group) putative ethylene receptor (ETR2) mRNA, complete cds Length = 2595 Score = 52.0 bits (26), Expect = 0.001 Identities = 77/94 (81%) Strand = Plus / Plus Query: 238 tggagcatggacaacatcttccggtggcagaaggtgagcgacctgctgatcgcggcggcc 297 ||||||| |||||||||| | | || |||| |||||||||| | || ||||| |||| Sbjct: 145 tggagcacggacaacatcctgcaatgccagagggtgagcgacttcctcatcgccatggcc 204 Query: 298 tacttcagcatcccgctcgagatcctctacttcg 331 |||||| ||||||||||||| | |||||||||| Sbjct: 205 tacttctccatcccgctcgagctgctctacttcg 238
>emb|AL663013.4|OSJN00214 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089K06, complete sequence Length = 129608 Score = 52.0 bits (26), Expect = 0.001 Identities = 77/94 (81%) Strand = Plus / Plus Query: 238 tggagcatggacaacatcttccggtggcagaaggtgagcgacctgctgatcgcggcggcc 297 ||||||| |||||||||| | | || |||| |||||||||| | || ||||| |||| Sbjct: 101551 tggagcacggacaacatcctgcaatgccagagggtgagcgacttcctcatcgccatggcc 101610 Query: 298 tacttcagcatcccgctcgagatcctctacttcg 331 |||||| ||||||||||||| | |||||||||| Sbjct: 101611 tacttctccatcccgctcgagctgctctacttcg 101644
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 52.0 bits (26), Expect = 0.001 Identities = 77/94 (81%) Strand = Plus / Plus Query: 238 tggagcatggacaacatcttccggtggcagaaggtgagcgacctgctgatcgcggcggcc 297 ||||||| |||||||||| | | || |||| |||||||||| | || ||||| |||| Sbjct: 4711418 tggagcacggacaacatcctgcaatgccagagggtgagcgacttcctcatcgccatggcc 4711477 Query: 298 tacttcagcatcccgctcgagatcctctacttcg 331 |||||| ||||||||||||| | |||||||||| Sbjct: 4711478 tacttctccatcccgctcgagctgctctacttcg 4711511 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 gcgcgccggctgctgctgctcgcgc 148 |||||||| |||||||||||||||| Sbjct: 22119805 gcgcgccgcctgctgctgctcgcgc 22119829 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 206 gctgcgacggcgggggcggca 226 ||||||||||||||||||||| Sbjct: 17127732 gctgcgacggcgggggcggca 17127712 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 ctgctgctcgcgctcgcgcc 155 |||||||||||||||||||| Sbjct: 32499569 ctgctgctcgcgctcgcgcc 32499550
>dbj|AK111765.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056E19, full insert sequence Length = 2856 Score = 52.0 bits (26), Expect = 0.001 Identities = 77/94 (81%) Strand = Plus / Plus Query: 238 tggagcatggacaacatcttccggtggcagaaggtgagcgacctgctgatcgcggcggcc 297 ||||||| |||||||||| | | || |||| |||||||||| | || ||||| |||| Sbjct: 963 tggagcacggacaacatcctgcaatgccagagggtgagcgacttcctcatcgccatggcc 1022 Query: 298 tacttcagcatcccgctcgagatcctctacttcg 331 |||||| ||||||||||||| | |||||||||| Sbjct: 1023 tacttctccatcccgctcgagctgctctacttcg 1056
>dbj|AK111748.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048C17, full insert sequence Length = 3179 Score = 52.0 bits (26), Expect = 0.001 Identities = 77/94 (81%) Strand = Plus / Plus Query: 238 tggagcatggacaacatcttccggtggcagaaggtgagcgacctgctgatcgcggcggcc 297 ||||||| |||||||||| | | || |||| |||||||||| | || ||||| |||| Sbjct: 737 tggagcacggacaacatcctgcaatgccagagggtgagcgacttcctcatcgccatggcc 796 Query: 298 tacttcagcatcccgctcgagatcctctacttcg 331 |||||| ||||||||||||| | |||||||||| Sbjct: 797 tacttctccatcccgctcgagctgctctacttcg 830
>gb|AF420319.2| Oryza sativa ethylene receptor-like protein 1 mRNA, partial cds Length = 2292 Score = 52.0 bits (26), Expect = 0.001 Identities = 77/94 (81%) Strand = Plus / Plus Query: 238 tggagcatggacaacatcttccggtggcagaaggtgagcgacctgctgatcgcggcggcc 297 ||||||| |||||||||| | | || |||| |||||||||| | || ||||| |||| Sbjct: 130 tggagcacggacaacatcctgcaatgccagagggtgagcgacttcctcatcgccatggcc 189 Query: 298 tacttcagcatcccgctcgagatcctctacttcg 331 |||||| ||||||||||||| | |||||||||| Sbjct: 190 tacttctccatcccgctcgagctgctctacttcg 223
>gb|AY434734.1| Oryza sativa (indica cultivar-group) putative ethylene receptor (ETR4) mRNA, complete cds Length = 2711 Score = 50.1 bits (25), Expect = 0.005 Identities = 52/61 (85%) Strand = Plus / Plus Query: 271 gtgagcgacctgctgatcgcggcggcctacttcagcatcccgctcgagatcctctacttc 330 |||||| ||||||| ||||||||| ||| | || ||||||||||||| || |||||||| Sbjct: 165 gtgagcaacctgctcatcgcggcgtccttcctctccatcccgctcgagctcttctacttc 224 Query: 331 g 331 | Sbjct: 225 g 225
>gb|AF497626.1| Oryza sativa putative protein kinase PK3 mRNA, complete cds Length = 2334 Score = 50.1 bits (25), Expect = 0.005 Identities = 52/61 (85%) Strand = Plus / Plus Query: 271 gtgagcgacctgctgatcgcggcggcctacttcagcatcccgctcgagatcctctacttc 330 |||||| ||||||| ||||||||| ||| | || ||||||||||||| || |||||||| Sbjct: 136 gtgagcaacctgctcatcgcggcgtccttcctctccatcccgctcgagctcttctacttc 195 Query: 331 g 331 | Sbjct: 196 g 196
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.076 Identities = 47/55 (85%) Strand = Plus / Plus Query: 235 ttctggagcatggacaacatcttccggtggcagaaggtgagcgacctgctgatcg 289 |||| ||||||||||||||||||| ||| || ||||| || |||||||| |||| Sbjct: 235151 ttctagagcatggacaacatcttcatgtgacacaaggtaagagacctgctcatcg 235205
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.076 Identities = 47/55 (85%) Strand = Plus / Plus Query: 235 ttctggagcatggacaacatcttccggtggcagaaggtgagcgacctgctgatcg 289 |||| ||||||||||||||||||| ||| || ||||| || |||||||| |||| Sbjct: 235151 ttctagagcatggacaacatcttcatgtgacacaaggtaagagacctgctcatcg 235205
>emb|BX000491.1|CNS08CDH Oryza sativa chromosome 12, . BAC OSJNBb0068K19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 96667 Score = 46.1 bits (23), Expect = 0.076 Identities = 47/55 (85%) Strand = Plus / Minus Query: 235 ttctggagcatggacaacatcttccggtggcagaaggtgagcgacctgctgatcg 289 |||| ||||||||||||||||||| ||| || ||||| || |||||||| |||| Sbjct: 40105 ttctagagcatggacaacatcttcatgtgacacaaggtaagagacctgctcatcg 40051
>gb|AY124589.1| Agromyces mediolanus decaprenoxanthin biosynthetic operon, complete sequence Length = 8651 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 275 gcgacctgctgatcgcggcggc 296 |||||||||||||||||||||| Sbjct: 2962 gcgacctgctgatcgcggcggc 2983
>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence Length = 139999 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 132 gctgctgctgctcgcgctcgcg 153 |||||||||||||||||||||| Sbjct: 118851 gctgctgctgctcgcgctcgcg 118872
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.30 Identities = 34/38 (89%) Strand = Plus / Plus Query: 235 ttctggagcatggacaacatcttccggtggcagaaggt 272 |||| ||||||||||||||||||| || ||| |||||| Sbjct: 219922 ttctagagcatggacaacatcttcagggggctgaaggt 219959
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 132 gctgctgctgctcgcgctcgcg 153 |||||||||||||||||||||| Sbjct: 22664182 gctgctgctgctcgcgctcgcg 22664203 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 120 cggcgcgcgccggctgctgctgct 143 ||||||||||| |||||||||||| Sbjct: 9822537 cggcgcgcgcctgctgctgctgct 9822560
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.30 Identities = 31/34 (91%) Strand = Plus / Plus Query: 118 gccggcgcgcgccggctgctgctgctcgcgctcg 151 ||||||||| || ||||| ||||||||||||||| Sbjct: 1325248 gccggcgcgggcgggctggtgctgctcgcgctcg 1325281 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 127 cgccggctgctgctgctcgcgctcg 151 |||||||||||||| |||||||||| Sbjct: 616941 cgccggctgctgctcctcgcgctcg 616965 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 gcggagccggcgcgcgccgg 132 |||||||||||||||||||| Sbjct: 3973632 gcggagccggcgcgcgccgg 3973613
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 132 gctgctgctgctcgcgctcgcg 153 |||||||||||||||||||||| Sbjct: 22676650 gctgctgctgctcgcgctcgcg 22676671 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 120 cggcgcgcgccggctgctgctgct 143 ||||||||||| |||||||||||| Sbjct: 9828576 cggcgcgcgcctgctgctgctgct 9828599
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.30 Identities = 34/38 (89%) Strand = Plus / Plus Query: 235 ttctggagcatggacaacatcttccggtggcagaaggt 272 |||| ||||||||||||||||||| || ||| |||||| Sbjct: 219922 ttctagagcatggacaacatcttcagggggctgaaggt 219959
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160673 Score = 44.1 bits (22), Expect = 0.30 Identities = 34/38 (89%) Strand = Plus / Minus Query: 235 ttctggagcatggacaacatcttccggtggcagaaggt 272 |||| ||||||||||||||||||| || ||| |||||| Sbjct: 85071 ttctagagcatggacaacatcttcagggggctgaaggt 85034
>gb|AC167718.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940130D9, complete sequence Length = 117683 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 ggctgctgctgctcgcgctcg 151 ||||||||||||||||||||| Sbjct: 103532 ggctgctgctgctcgcgctcg 103552
>ref|NM_189965.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1587 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 gctgcgacggcgggggcggca 226 ||||||||||||||||||||| Sbjct: 150 gctgcgacggcgggggcggca 170
>ref|XM_472635.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 528 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 gcgcgccggctgctgctgctcgcgc 148 |||||||| |||||||||||||||| Sbjct: 329 gcgcgccgcctgctgctgctcgcgc 353
>emb|AL645568.9| Human DNA sequence from clone RP11-296O14 on chromosome 1 Contains a pseudogene similar to part of ribosomal protein L26 (RPL26), a novel pseudogene and a novel gene, complete sequence Length = 136031 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 gcgccggctgctgctgctcgc 146 ||||||||||||||||||||| Sbjct: 73544 gcgccggctgctgctgctcgc 73524
>gb|AC167662.6| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940141D9, complete sequence Length = 117679 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 ggctgctgctgctcgcgctcg 151 ||||||||||||||||||||| Sbjct: 14152 ggctgctgctgctcgcgctcg 14132
>emb|AL731606.2|OSJN00249 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058G03, complete sequence Length = 46422 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 gcgcgccggctgctgctgctcgcgc 148 |||||||| |||||||||||||||| Sbjct: 18286 gcgcgccgcctgctgctgctcgcgc 18310
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 206 gctgcgacggcgggggcggca 226 ||||||||||||||||||||| Sbjct: 40066837 gctgcgacggcgggggcggca 40066817 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 ggcggcggcgggcggtgacg 187 |||||||||||||||||||| Sbjct: 29122147 ggcggcggcgggcggtgacg 29122166 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 ggcggcggcgggcggtgacg 187 |||||||||||||||||||| Sbjct: 6862182 ggcggcggcgggcggtgacg 6862201
>dbj|AP003451.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0413C03 Length = 162161 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 206 gctgcgacggcgggggcggca 226 ||||||||||||||||||||| Sbjct: 158288 gctgcgacggcgggggcggca 158268
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0678F11 Length = 154292 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 206 gctgcgacggcgggggcggca 226 ||||||||||||||||||||| Sbjct: 9921 gctgcgacggcgggggcggca 9901
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 213 cggcgggggcggcatgggcgg 233 ||||||||||||||||||||| Sbjct: 1475828 cggcgggggcggcatgggcgg 1475848 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gctgctcgcgctcgcgccct 157 |||||||||||||||||||| Sbjct: 1642730 gctgctcgcgctcgcgccct 1642749
>dbj|AK072446.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111G02, full insert sequence Length = 2836 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 gctgcgacggcgggggcggca 226 ||||||||||||||||||||| Sbjct: 178 gctgcgacggcgggggcggca 198
>gb|AC157500.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0056O04, from chromosome 4, complete sequence Length = 90825 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 124 gcgcgccggctgctgctgctcgcgc 148 |||||||| |||||||||||||||| Sbjct: 44310 gcgcgccgcctgctgctgctcgcgc 44334
>emb|AL662956.3|OSJN00159 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0018J19, complete sequence Length = 169559 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 206 gctgcgacggcgggggcggca 226 ||||||||||||||||||||| Sbjct: 72029 gctgcgacggcgggggcggca 72009
>ref|NM_188540.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 876 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ggcggcggcgggcggtgacg 187 |||||||||||||||||||| Sbjct: 829 ggcggcggcgggcggtgacg 810
>ref|XM_474058.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 906 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 ctgctgctcgcgctcgcgcc 155 |||||||||||||||||||| Sbjct: 603 ctgctgctcgcgctcgcgcc 584
>ref|XM_465912.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1305 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cgccgctgtggcggcggcgg 178 |||||||||||||||||||| Sbjct: 721 cgccgctgtggcggcggcgg 740
>ref|XM_463158.1| Oryza sativa (japonica cultivar-group), mRNA Length = 432 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 gctgtggcggcggcgggcgg 182 |||||||||||||||||||| Sbjct: 46 gctgtggcggcggcgggcgg 65
>ref|NM_195898.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0045C13.7), mRNA Length = 1386 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 120 cggcgcgcgccggctgctgctgct 143 ||||||||||| |||||||||||| Sbjct: 322 cggcgcgcgcctgctgctgctgct 345
>gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1045_C06, complete sequence Length = 143130 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ggcggcggcgggcggtgacg 187 |||||||||||||||||||| Sbjct: 78857 ggcggcggcgggcggtgacg 78838
>gb|BT019161.1| Zea mays clone Contig826.F mRNA sequence Length = 946 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 gaaggtgagcgacctgctga 286 |||||||||||||||||||| Sbjct: 592 gaaggtgagcgacctgctga 573
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 266 agaaggtgagcgacctgctgatcgcggc 293 |||||| | ||||||||||||||||||| Sbjct: 1025493 agaaggcgcgcgacctgctgatcgcggc 1025466
>gb|AC135500.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0034J04 map S1466, complete sequence Length = 140012 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 gctgtggcggcggcgggcgg 182 |||||||||||||||||||| Sbjct: 135501 gctgtggcggcggcgggcgg 135482
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 119 ccggcgcgcgccggctgctgctgc 142 ||||| |||||||||||||||||| Sbjct: 3265637 ccggcacgcgccggctgctgctgc 3265614 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 ggagccggcgcgcgccggct 134 |||||||||||||||||||| Sbjct: 1931901 ggagccggcgcgcgccggct 1931920
>gb|AY313901.1| Zea mays yabby14 protein mRNA, complete cds Length = 1267 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 cgccgctgtggcggcggcgg 178 |||||||||||||||||||| Sbjct: 923 cgccgctgtggcggcggcgg 904
>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila) (NOTCH1), mRNA Length = 9312 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 202 tgcagctgcgacggcgggggcggc 225 |||||||||| ||||||||||||| Sbjct: 5207 tgcagctgcgccggcgggggcggc 5184
>gb|AY657079.1| Synthetic construct Peudomonas aeruginosa clone FLH031942.01F PA2045 gene, partial cds Length = 261 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 cggcgcgcgccggctgctgc 139 |||||||||||||||||||| Sbjct: 147 cggcgcgcgccggctgctgc 166
>gb|AY530889.1| HIV-2 isolate 96FR12034 from France, complete genome Length = 9607 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 gcctacttcagcatcccgct 314 |||||||||||||||||||| Sbjct: 2756 gcctacttcagcatcccgct 2775
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 gctcgcgctcgcgcccttcgccgc 164 |||||||||||||| ||||||||| Sbjct: 2959292 gctcgcgctcgcgctcttcgccgc 2959269
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 119 ccggcgcgcgccggctgctgctgc 142 ||||| |||||||||||||||||| Sbjct: 723964 ccggcacgcgccggctgctgctgc 723941
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 124 gcgcgccggctgctgctgctcgcg 147 ||||||| |||||||||||||||| Sbjct: 845021 gcgcgcccgctgctgctgctcgcg 845044
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 gctgtggcggcggcgggcgg 182 |||||||||||||||||||| Sbjct: 22865570 gctgtggcggcggcgggcgg 22865551
>ref|XM_861862.1| PREDICTED: Canis familiaris hypothetical protein LOC610520 (LOC610520), mRNA Length = 933 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 cgcgcgccggctgctgctgc 142 |||||||||||||||||||| Sbjct: 306 cgcgcgccggctgctgctgc 325
>gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete sequence Length = 184783 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 gctgtggcggcggcgggcgg 182 |||||||||||||||||||| Sbjct: 68100 gctgtggcggcggcgggcgg 68081
>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3' end of the gene for activator of G-protein signalling 3 (AGS3), two novel genes, the CARD9 gene for caspase recruitment domain family member 9, the SNAPC4 gene for a 190kDa small nuclear RNA activating complex polypeptide 4, the SDCCAG3 gene for serologically defined colon cancer antigen 3, the INPP5E gene for a 72kDa inositol polyphosphate-5-phosphatase, the gene for phosphatidylinositol polyphosphate 5-phosphatase type IV (PPI5PIV), a novel gene (KIAA0310), the 3' end of the NOTCH1 gene for Notch homolog 1 translocation-associated (Drosophila) and twenty CpG islands, complete sequence Length = 188462 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 202 tgcagctgcgacggcgggggcggc 225 |||||||||| ||||||||||||| Sbjct: 146076 tgcagctgcgccggcgggggcggc 146099
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 gctgctgctgctcgcgctcg 151 |||||||||||||||||||| Sbjct: 3910907 gctgctgctgctcgcgctcg 3910926
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 gcccaatctgtttgccactg 60 |||||||||||||||||||| Sbjct: 3451247 gcccaatctgtttgccactg 3451266
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 ccggcgcgcgccggctgctg 138 |||||||||||||||||||| Sbjct: 47502 ccggcgcgcgccggctgctg 47521
>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12 Length = 257701 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 ccggcgcgcgccggctgctg 138 |||||||||||||||||||| Sbjct: 96870 ccggcgcgcgccggctgctg 96851
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 gctcgcgctcgcgcccttcgccgc 164 |||||||||||||| ||||||||| Sbjct: 1137859 gctcgcgctcgcgctcttcgccgc 1137836
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 119 ccggcgcgcgccggctgctgctgc 142 ||||| |||||||||||||||||| Sbjct: 532609 ccggcacgcgccggctgctgctgc 532586
>emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003B01, complete sequence Length = 153643 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 ctgctgctcgcgctcgcgcc 155 |||||||||||||||||||| Sbjct: 18303 ctgctgctcgcgctcgcgcc 18284
>emb|AL606657.4|OSJN00101 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034I13, complete sequence Length = 123480 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 ctgctgctcgcgctcgcgcc 155 |||||||||||||||||||| Sbjct: 116370 ctgctgctcgcgctcgcgcc 116351
>gb|AC079634.3|AC079634 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045C13, from Chromosome 10, complete sequence Length = 161250 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 120 cggcgcgcgccggctgctgctgct 143 ||||||||||| |||||||||||| Sbjct: 55016 cggcgcgcgcctgctgctgctgct 55039
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 gctcgcgctcgcgcccttcgccgc 164 |||||||||||||| ||||||||| Sbjct: 732401 gctcgcgctcgcgctcttcgccgc 732378
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ggcggcggcgggcggtgacg 187 |||||||||||||||||||| Sbjct: 16866361 ggcggcggcgggcggtgacg 16866342
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 gctgtggcggcggcgggcgg 182 |||||||||||||||||||| Sbjct: 22858598 gctgtggcggcggcgggcgg 22858579
>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds Length = 7693 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 202 tgcagctgcgacggcgggggcggc 225 |||||||||| ||||||||||||| Sbjct: 5207 tgcagctgcgccggcgggggcggc 5184
>gb|AE004631.1| Pseudomonas aeruginosa PAO1, section 192 of 529 of the complete genome Length = 10864 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 cggcgcgcgccggctgctgc 139 |||||||||||||||||||| Sbjct: 2274 cggcgcgcgccggctgctgc 2255
>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0421H07 Length = 158126 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 ggcggcggcgggcggtgacg 187 |||||||||||||||||||| Sbjct: 82513 ggcggcggcgggcggtgacg 82532
>dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492F05 Length = 159242 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 ggcggcggcgggcggtgacg 187 |||||||||||||||||||| Sbjct: 29906 ggcggcggcgggcggtgacg 29925
>dbj|AP002835.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0417G05 Length = 147803 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 ggcggcggcgggcggtgacg 187 |||||||||||||||||||| Sbjct: 144243 ggcggcggcgggcggtgacg 144262
>dbj|AP005841.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0052M16 Length = 145423 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cgccgctgtggcggcggcgg 178 |||||||||||||||||||| Sbjct: 89214 cgccgctgtggcggcggcgg 89233
>dbj|AP005696.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0063K04 Length = 158792 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 ggcggcggcgggcggtgacg 187 |||||||||||||||||||| Sbjct: 86894 ggcggcggcgggcggtgacg 86913
>dbj|AK120994.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043O20, full insert sequence Length = 1930 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 120 cggcgcgcgccggctgctgctgct 143 ||||||||||| |||||||||||| Sbjct: 453 cggcgcgcgcctgctgctgctgct 476
>ref|XM_310848.2| Anopheles gambiae str. PEST ENSANGP00000012493 (ENSANGG00000010004), partial mRNA Length = 525 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 255 cttccggtggcagaaggtgagcga 278 ||||||||||||||| |||||||| Sbjct: 102 cttccggtggcagaacgtgagcga 125
>dbj|AK071753.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110I06, full insert sequence Length = 1100 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 ctgctgctcgcgctcgcgcc 155 |||||||||||||||||||| Sbjct: 728 ctgctgctcgcgctcgcgcc 709
>dbj|AK070319.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050M24, full insert sequence Length = 1140 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 ctgctgctcgcgctcgcgcc 155 |||||||||||||||||||| Sbjct: 726 ctgctgctcgcgctcgcgcc 707
>gb|BC032414.1| Homo sapiens cDNA clone IMAGE:5215912, with apparent retained intron Length = 3721 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 202 tgcagctgcgacggcgggggcggc 225 |||||||||| ||||||||||||| Sbjct: 16 tgcagctgcgccggcgggggcggc 39
>gb|AY107950.1| Zea mays PCO076023 mRNA sequence Length = 1046 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 gaaggtgagcgacctgctga 286 |||||||||||||||||||| Sbjct: 457 gaaggtgagcgacctgctga 476
>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence Length = 412348 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 gctgctgctcgcgctcgcgc 154 |||||||||||||||||||| Sbjct: 291667 gctgctgctcgcgctcgcgc 291686
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 138 gctgctcgcgctcgcgcccttcgc 161 ||||| |||||||||||||||||| Sbjct: 1991845 gctgcccgcgctcgcgcccttcgc 1991868 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 ggctgctgctgctcgcgctcgcgc 154 |||||| ||||||||||||||||| Sbjct: 1920643 ggctgccgctgctcgcgctcgcgc 1920620
>dbj|AB209873.1| Homo sapiens mRNA for notch1 preproprotein variant protein Length = 7831 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 202 tgcagctgcgacggcgggggcggc 225 |||||||||| ||||||||||||| Sbjct: 3741 tgcagctgcgccggcgggggcggc 3718
>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end Length = 7332 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 202 tgcagctgcgacggcgggggcggc 225 |||||||||| ||||||||||||| Sbjct: 5207 tgcagctgcgccggcgggggcggc 5184
>dbj|D50308.1| Lysobacter lactamgenus DNA for alpha-aminoadipyl-cysteinyl-valine synthetase, complete cds Length = 11401 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 tcgccgctgtggcggcggcg 177 |||||||||||||||||||| Sbjct: 8657 tcgccgctgtggcggcggcg 8638
>dbj|D84646.1|TTHILVB Thermus aquaticus DNA for acetolactate synthase (ilvB), fumarase, manganese superoxide dismutase, partial cds and complete cds Length = 6955 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 289 gcggcggcctacttcagcatcccg 312 |||||||||| ||||||||||||| Sbjct: 3209 gcggcggccttcttcagcatcccg 3186 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,059,216 Number of Sequences: 3902068 Number of extensions: 3059216 Number of successful extensions: 74924 Number of sequences better than 10.0: 106 Number of HSP's better than 10.0 without gapping: 114 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70089 Number of HSP's gapped (non-prelim): 4832 length of query: 352 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 330 effective length of database: 17,147,199,772 effective search space: 5658575924760 effective search space used: 5658575924760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)