>IF3X_HUMAN (O75153) Putative eukaryotic translation initiation factor 3|
           subunit (eIF-3)
          Length = 1309

 Score =  101 bits (252), Expect = 7e-22
 Identities = 56/140 (40%), Positives = 75/140 (53%), Gaps = 2/140 (1%)
 Frame = +1

Query: 22  ITGNSKSFYVNASNGSVLDSRPLKQSHEASTLVGLLQKISAKFKKGFREILDRKASAHPF 201
           IT +++ FY+N S     + +P      + +LV LL +IS  FKK F  +  ++   HPF
Sbjct: 251 ITASTRGFYLNQSTAYHFNPKPASPRFLSHSLVELLNQISPTFKKNFAVLQKKRVQRHPF 310

Query: 202 ENVQALLPVTSWLGAHPVPEHRRDSARAEDSVV--LSYGTELIGMQRDWNEELQSCREFP 375
           E +     V SW    P  EH  D  RAED+    L Y   + G  RDWNEELQ+ RE P
Sbjct: 311 ERIATPFQVYSWTA--PQAEHAMDCVRAEDAYTSRLGYEEHIPGQTRDWNEELQTTRELP 368

Query: 376 HANPQERILRGRALYKVTCD 435
             N  ER+LR RA++KV  D
Sbjct: 369 RKNLPERLLRERAIFKVHSD 388

>IF3X_DICDI (O15818) Putative eukaryotic translation initiation factor 3|
           subunit (eIF-3)
          Length = 1321

 Score = 92.0 bits (227), Expect = 6e-19
 Identities = 48/145 (33%), Positives = 82/145 (56%)
 Frame = +1

Query: 1   LEGSKHCITGNSKSFYVNASNGSVLDSRPLKQSHEASTLVGLLQKISAKFKKGFREILDR 180
           LEG+  C+T +++ F++N S+ +  +     ++    +L  LL ++S  F++G  +IL  
Sbjct: 297 LEGTTICVTASTQGFFINQSSNATFNPSVSPKATINHSLHQLLTQVSRLFRRGLNQILTN 356

Query: 181 KASAHPFENVQALLPVTSWLGAHPVPEHRRDSARAEDSVVLSYGTELIGMQRDWNEELQS 360
               HPF+ +  +LPV +W+ +     +R D  +  D+ V     EL G  RDWNEE+Q+
Sbjct: 357 IGRNHPFDMLPGVLPVHNWVASSKT--NRYDINKGTDTFVSVQDVELRGNPRDWNEEIQA 414

Query: 361 CREFPHANPQERILRGRALYKVTCD 435
            +E P +  QERI+R RA+ KV  +
Sbjct: 415 PKELPKSTVQERIIRDRAISKVNSE 439

>IF3X_SCHPO (O59742) Probable eukaryotic translation initiation factor 3 135|
           kDa subunit (eIF3 p135) (Translation initiation factor
           eIF3, p135 subunit)
          Length = 1173

 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 54/149 (36%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
 Frame = +1

Query: 1   LEGSKHCITGNSKSFYVNASNGSVLDSRPLK--QSHEASTLVGLLQKISAKFKKGFREIL 174
           +EG  + IT +   FYVN    +  D  P    QSH   +LV LL+++S  FK+     L
Sbjct: 232 IEGKTYNITSHVSGFYVNNCTSTKFDPSPCDDLQSH---SLVLLLEQLSPLFKERLHLSL 288

Query: 175 D--RKASAHPFENVQALLPVTSWLGAHPVPEHRRDSARAEDSVVLSYGTELIGMQRDWNE 348
           +  +   A    ++   LP   W+   PVP HR D +R + S +  Y  E  G  RDWNE
Sbjct: 289 NDYKSGDAIAQASITGTLPQAPWI-TFPVP-HRADLSRTQKSELFPY-IENQGNLRDWNE 345

Query: 349 ELQSCREFPHANPQERILRGRALYKVTCD 435
           E+QS RE  H + Q+R+LR R   K   D
Sbjct: 346 EIQSTREMDHEDVQDRVLRERLTVKTLQD 374

>IF3X_CAEEL (P34466) Putative eukaryotic translation initiation factor 3|
           subunit (eIF-3)
          Length = 1247

 Score = 69.3 bits (168), Expect = 4e-12
 Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 6/151 (3%)
 Frame = +1

Query: 1   LEGSKHCITGNSKSFYVNASNGSVLDSRPLKQSHEA-STLVGLLQKISAKFKKGFREILD 177
           +E   + +T  ++ FYVN S     D      +     +++ LLQ +S  FKK + +IL 
Sbjct: 238 VENRIYHVTCCTRGFYVNNSQDGRFDPTVSNSNKTVYQSVIELLQNVSPGFKKVYPQILK 297

Query: 178 RKASAHPFENVQALLPVTSWLGAHPVPE--HRRDSARA---EDSVVLSYGTELIGMQRDW 342
           R+      E +    PV+SW+G +P+    +  DS RA    +   + +   + G+ RDW
Sbjct: 298 RRQEKTLVERLPTSYPVSSWVG-NPLKTDGYMSDSLRAIELTEPFRVGFEDHMPGLLRDW 356

Query: 343 NEELQSCREFPHANPQERILRGRALYKVTCD 435
           NEELQ+  E    +  ER++R R+ YK+  D
Sbjct: 357 NEELQTTFEMTRKSISERVIRDRSYYKIHAD 387

>IF3X_YEAST (Q03690) Eukaryotic translation initiation factor 3 135 kDa subunit|
           (eIF3 p135) (Translation initiation factor eIF3, p135
           subunit)
          Length = 1277

 Score = 37.7 bits (86), Expect = 0.013
 Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 8/150 (5%)
 Frame = +1

Query: 1   LEGSKHCITGNSKSFYVNASNGSVLDSRPL----KQSHEASTLVGLLQKISAKFKKGFRE 168
           LEG    IT     FYVN SN +  D  P     + +H +     L   I+++ KK    
Sbjct: 246 LEGESFYITAIPSGFYVNKSNSTKFDPSPKENTDENAHSSLIYYSLFDLIASRSKKFISH 305

Query: 169 ILDRKASAHPFENVQALLPVTSWLG----AHPVPEHRRDSARAEDSVVLSYGTELIGMQR 336
           +   +      ++   + P  ++L        +P +  D  R + + + +        +R
Sbjct: 306 VQAFEKKLSALDSTSYVRPSNTFLHKPWFVSSLPPNNPDYLRLQTAALDT------TPER 359

Query: 337 DWNEELQSCREFPHANPQERILRGRALYKV 426
           ++N+E Q+ ++   +  Q+RI   R   KV
Sbjct: 360 NFNDEFQAIKDLTTSTLQDRIEMERLFSKV 389

>OAZ_CANGA (Q6FJC4) Ornithine decarboxylase antizyme|
          Length = 255

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 205 NVQALLPVTSWLGAHPVPEHRRDSARAEDSVVLSYGTELI 324
           N+Q LL    W+GA+ +P   R+     D + LS  T +I
Sbjct: 211 NIQTLLKNLHWIGANLLPNENRNECNENDDITLSDETYII 250

>NHR47_CAEEL (Q17370) Nuclear hormone receptor family member nhr-47|
          Length = 579

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 30/150 (20%), Positives = 62/150 (41%), Gaps = 8/150 (5%)
 Frame = +1

Query: 10  SKHCITGNSKSFYVNASNGSVLDSRPLKQSHEASTLVGLLQKISAKFKKGFREILDRKAS 189
           S+H   G+S S  +N  +   +D + +K   + + L  +  +++   +  F  +L R A 
Sbjct: 109 SEHIRDGSSGSPQMNDESPESMDMKDIKI--DLNCLDPIADRLTT-LENNFTLLLSRCAD 165

Query: 190 AHPFENVQALLPVTSWLGAHPVPEHRRDSARAEDSVVLS--------YGTELIGMQRDWN 345
            H +  ++  L   S     P+      S    D+VVL+        +   LI +  DW 
Sbjct: 166 LHSYATLEDALNAPSRF-MQPI------SCEWSDNVVLTNRDDKLPFWRQRLIALYIDWA 218

Query: 346 EELQSCREFPHANPQERILRGRALYKVTCD 435
           +   + R  P+A+    +    + + + C+
Sbjct: 219 KTFSTFRSLPYADKVAMVTNHASSFMIMCE 248

>KLF17_HUMAN (Q5JT82) Krueppel-like factor 17 (Zinc finger protein 393)|
          Length = 389

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +1

Query: 226 VTSWLGAHPVPEHRRDSARAEDSVVLSYGTELIGMQRDWNEELQSCREFPHA 381
           ++ W  AH   +   +SA   +   +S  +   G+   WN+ L S + FPH+
Sbjct: 16  LSRWQAAHQAAQDNENSAPILN---MSSSSGSSGVHTSWNQGLPSIQHFPHS 64

>RECF_SYNSC (Q3AML2) DNA replication and repair protein recF|
          Length = 364

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 21/60 (35%), Positives = 27/60 (45%)
 Frame = +1

Query: 229 TSWLGAHPVPEHRRDSARAEDSVVLSYGTELIGMQRDWNEELQSCREFPHANPQERILRG 408
           T  L  H  P  R D   AE+   L+   E +  QR+  E L SCR  PH +    +L G
Sbjct: 209 TETLELHYKPGSRLDGEDAEEPWRLAI-EEQLRQQREEEERLGSCRVGPHRDEIALLLGG 267


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,594,585
Number of Sequences: 219361
Number of extensions: 1362683
Number of successful extensions: 3254
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3248
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)