ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl04e04 |
|---|---|
| Clone Library Name | barley_pub |
>OXRP_RAT (Q63617) 150 kDa oxygen-regulated protein precursor (Orp150)| (Hypoxia up-regulated 1) Length = 999 Score = 42.4 bits (98), Expect = 3e-04 Identities = 22/53 (41%), Positives = 33/53 (62%) Frame = +2 Query: 179 IDLGSEWLKVAAEHLAPGRAPIAVAINEMSKRKSPALAALADGNRLAGEEAAG 337 +DLGSE +KVA + PG P+ + +N+ S+RK+P L + R G+ AAG Sbjct: 38 VDLGSESMKVAI--VKPG-VPMEIVLNKESRRKTPVTVTLKENERFLGDSAAG 87
>OXRP_CRIGR (Q60432) 150 kDa oxygen-regulated protein precursor (Orp150)| (Hypoxia up-regulated 1) (170 kDa glucose-regulated protein) Length = 999 Score = 42.4 bits (98), Expect = 3e-04 Identities = 22/53 (41%), Positives = 33/53 (62%) Frame = +2 Query: 179 IDLGSEWLKVAAEHLAPGRAPIAVAINEMSKRKSPALAALADGNRLAGEEAAG 337 +DLGSE +KVA + PG P+ + +N+ S+RK+P L + R G+ AAG Sbjct: 38 VDLGSESMKVAI--VKPG-VPMEIVLNKESRRKTPVTVTLKENERFLGDSAAG 87
>CHEB2_PSEF5 (Q4KG36) Chemotaxis response regulator protein-glutamate| methylesterase 2 (EC 3.1.1.61) Length = 373 Score = 32.7 bits (73), Expect = 0.23 Identities = 15/27 (55%), Positives = 17/27 (62%) Frame = +3 Query: 9 APAPSTLASSRSPNPDPPACHPTSPLA 89 APAPS+ ASSRSP P P +P A Sbjct: 151 APAPSSFASSRSPAPAPAPARAAAPAA 177
>XYLS_SULSO (Q9P999) Alpha-xylosidase (EC 3.2.1.-)| Length = 731 Score = 30.8 bits (68), Expect = 0.87 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = -3 Query: 121 EQETRRHAGERASGLVGWHAGGSGFGDLELASVDGAG 11 EQE GER GL G HAGG+G G +D +G Sbjct: 103 EQEFELSEGERVYGL-GQHAGGNGLGQSSAYKLDYSG 138
>IGHA1_GORGO (P20758) Ig alpha-1 chain C region| Length = 353 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = +3 Query: 6 RAPA-PSTLASSRSPNPDPPACHPTSPLAR 92 R P+ P T + S P P PP CHP L R Sbjct: 102 RVPSTPPTPSPSTPPTPSPPCCHPRLSLHR 131
>SSGP_VOLCA (P21997) Sulfated surface glycoprotein 185 precursor (SSG 185)| Length = 485 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = +3 Query: 12 PAPSTLASSRSPNPDPPACHPTSPLARSP 98 P+P ASSR P+P PP+ P SP SP Sbjct: 231 PSPQPTASSRPPSP-PPSPRPPSPPPPSP 258
>HXC4_HUMAN (P09017) Homeobox protein Hox-C4 (Hox-3E) (CP19)| Length = 264 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 6/35 (17%) Frame = +3 Query: 12 PAPSTLASSRSPNPDPPAC------HPTSPLARSP 98 PAP + AS+ SP+P PPAC HP+S ++ P Sbjct: 100 PAPLSGASA-SPSPAPPACSQPAPDHPSSAASKQP 133
>HSP7F_SCHPO (O59838) Heat shock protein homolog pss1| Length = 720 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/51 (37%), Positives = 29/51 (56%) Frame = +2 Query: 179 IDLGSEWLKVAAEHLAPGRAPIAVAINEMSKRKSPALAALADGNRLAGEEA 331 ID G+ +A +A RA I V +NE+S R +P+L + + +R GE A Sbjct: 10 IDFGNSKTVIA---VARNRA-IDVIVNEVSNRSTPSLVSYGERSRFLGEAA 56
>SPT5H_HUMAN (O00267) Transcription elongation factor SPT5 (hSPT5) (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) (DSIF p160) (Tat-cotransactivator 1 protein) (Tat-CT1 protein) Length = 1087 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 12 PAPSTLASSRSPNPDPPACHPTSPLARSP 98 P PS +A SP+P P P +P A SP Sbjct: 932 PTPSPMAYQASPSPSPVGYSPMTPGAPSP 960
>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)| Length = 3164 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +3 Query: 6 RAPAPSTLASSRSPNPDPPACHPTSP 83 R PA T +S P+P PPA P +P Sbjct: 2832 RNPAEPTSSSPAGPSPPPPAVQPVAP 2857
>SPT5H_BRARE (Q9DDT5) Transcription elongation factor SPT5 (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) (Protein foggy) Length = 1084 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 12 PAPSTLASSRSPNPDPPACHPTSPLARSP 98 P PS +A SP+P P P +P A SP Sbjct: 930 PTPSPMAYQASPSPSPVGYSPMTPGAPSP 958
>SPT5H_CHICK (Q5ZI08) Transcription elongation factor SPT5 (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) Length = 1079 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 12 PAPSTLASSRSPNPDPPACHPTSPLARSP 98 P PS +A SP+P P P +P A SP Sbjct: 924 PTPSPMAYQASPSPSPVGYSPMTPGAPSP 952
>HXC4_MOUSE (Q08624) Homeobox protein Hox-C4 (Hox-3.5)| Length = 264 Score = 29.3 bits (64), Expect = 2.5 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 6/35 (17%) Frame = +3 Query: 12 PAPSTLASSRSPNPDPPAC------HPTSPLARSP 98 PAP + +S SP+P PPAC HP+S ++ P Sbjct: 100 PAPLS-GTSASPSPAPPACSQPAPDHPSSAASKQP 133
>SPT5H_PONPY (Q5R405) Transcription elongation factor SPT5 (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) Length = 1083 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 12 PAPSTLASSRSPNPDPPACHPTSPLARSP 98 P PS +A SP+P P P +P A SP Sbjct: 928 PTPSPMAYQASPSPSPVGYSPMTPGAPSP 956
>SPT5H_MOUSE (O55201) Transcription elongation factor SPT5 (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) Length = 1082 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 12 PAPSTLASSRSPNPDPPACHPTSPLARSP 98 P PS +A SP+P P P +P A SP Sbjct: 926 PTPSPMAYQASPSPSPVGYSPMTPGAPSP 954
>POLR_EPMV (P20126) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1839 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%) Frame = +3 Query: 24 TLASSRSP----NPDPPACHPTSPLARSP 98 TL +++P NP PP+ HP +PLA P Sbjct: 705 TLVPAKTPSIYANPTPPSSHPFTPLADDP 733
>RECX_XANCI (P0A0W7) Regulatory protein recX| Length = 162 Score = 28.9 bits (63), Expect = 3.3 Identities = 25/81 (30%), Positives = 34/81 (41%) Frame = -3 Query: 274 ALGHLVDGDGDRGAARREVLGRDLEPLGAQVDXXXXXXXXXXXXXXRDEGEEQETRRHAG 95 ALG LV + R R++L R +EP AQ DEG + +TR A Sbjct: 23 ALGLLVRREHSRKELNRKLLARGIEPDAAQ----------AAVDRLTDEGWQDDTRFAAA 72 Query: 94 ERASGLVGWHAGGSGFGDLEL 32 V + GSG+G L + Sbjct: 73 ------VVRNRAGSGYGPLHI 87
>RECX_XANAC (P0A0W6) Regulatory protein recX| Length = 162 Score = 28.9 bits (63), Expect = 3.3 Identities = 25/81 (30%), Positives = 34/81 (41%) Frame = -3 Query: 274 ALGHLVDGDGDRGAARREVLGRDLEPLGAQVDXXXXXXXXXXXXXXRDEGEEQETRRHAG 95 ALG LV + R R++L R +EP AQ DEG + +TR A Sbjct: 23 ALGLLVRREHSRKELNRKLLARGIEPDAAQ----------AAVDRLTDEGWQDDTRFAAA 72 Query: 94 ERASGLVGWHAGGSGFGDLEL 32 V + GSG+G L + Sbjct: 73 ------VVRNRAGSGYGPLHI 87
>PCGF2_MOUSE (P23798) Polycomb group RING finger protein 2 (DNA-binding protein| Mel-18) (RING finger protein 110) (Zinc finger protein 144) (Zfp-144) Length = 342 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 13/39 (33%) Frame = +3 Query: 6 RAPAPSTL--ASSRSPNP-----------DPPACHPTSP 83 +AP+P+TL SS P+P PPA HPTSP Sbjct: 262 KAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHPTSP 300
>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor| (Hydroxyproline-rich glycoprotein 1) Length = 555 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +3 Query: 9 APAPSTLASSRSPNPDPPACHPTSPLARSP 98 +PAP + S P+P PP+ P SP SP Sbjct: 72 SPAPPSPPSPAPPSPAPPSPAPPSPAPPSP 101 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +3 Query: 9 APAPSTLASSRSPNPDPPACHPTSPLARSP 98 +PAP + S P+P PPA P SP+ SP Sbjct: 222 SPAPPSPPSPAPPSPSPPA--PPSPVPPSP 249 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +3 Query: 9 APAPSTLASSRSPNPDPPACHPTSPLARSP 98 +PAP + A P+P PP+ P +P + SP Sbjct: 110 SPAPPSPAPPSPPSPAPPSPSPPAPPSPSP 139 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +3 Query: 9 APAPSTLASSRSPNPDPPACHPTSPLARSP 98 +PAP + + P+P PP+ P SP SP Sbjct: 230 SPAPPSPSPPAPPSPVPPSPAPPSPAPPSP 259 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +3 Query: 9 APAPSTLASSRSPNPDPPACHPTSPLARSP 98 +PAP + S P+P PPA P SP SP Sbjct: 115 SPAPPSPPSPAPPSPSPPA--PPSPSPPSP 142 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +3 Query: 9 APAPSTLASSRSPNPDPPACHPTSPLARSP 98 +P P + A P+P PP+ P SP SP Sbjct: 67 SPGPPSPAPPSPPSPAPPSPAPPSPAPPSP 96
>PCGF2_HUMAN (P35227) Polycomb group RING finger protein 2 (DNA-binding protein| Mel-18) (RING finger protein 110) (Zinc finger protein 144) Length = 344 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 13/39 (33%) Frame = +3 Query: 6 RAPAPSTL--ASSRSPNP-----------DPPACHPTSP 83 +AP+P+TL SS P+P PPA HPTSP Sbjct: 262 KAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHPTSP 300
>PRP28_CRYNE (Q5KNF8) Pre-mRNA splicing ATP-dependent RNA helicase PRP28 (EC| 3.6.1.-) Length = 738 Score = 28.5 bits (62), Expect = 4.3 Identities = 17/41 (41%), Positives = 21/41 (51%) Frame = -3 Query: 133 DEGEEQETRRHAGERASGLVGWHAGGSGFGDLELASVDGAG 11 D E+E RRH ER G++AG SG D + DG G Sbjct: 62 DRAAEEERRRHEQER----YGYNAGPSGRNDRDGYGRDGYG 98
>SIL1_YARLI (Q99158) Nucleotide exchange factor SIL1 precursor (Protein SLS1)| Length = 426 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -3 Query: 319 GEAVAVGQRGERGGLALGHLVDGDGDRGAARREVLGRDLE 200 G AVAVG+ G + + L + +GD G + E + R +E Sbjct: 83 GVAVAVGEEVPEGEVVIEDLTEENGDEGISANEKVQRAIE 122
>STP2_RAT (P11101) Nuclear transition protein 2 (TP-2) (TP2)| Length = 114 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = +3 Query: 3 SRAPAPSTLASSRSPNPDPPACHPTSPL 86 S+A PS SS SP+P PP HP +P+ Sbjct: 39 SQAGHPS---SSSSPSPGPPTKHPKTPM 63
>LAMBV_CHICK (Q01636) Laminin beta-1 chain variant (Laminin beta-1-2 chain)| (Fragment) Length = 198 Score = 28.1 bits (61), Expect = 5.7 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +1 Query: 16 PRPHSRAPDPRTLTPPHAIP 75 P P R PDP + PPHA P Sbjct: 25 PDPTRRHPDPESRAPPHARP 44
>CING_HUMAN (Q9P2M7) Cingulin| Length = 1197 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = -3 Query: 325 LAGEAVAVGQRGERGGLALGHLVDGDGDRGAARREVLGRDLE 200 +AG+ V GE+GG + G + G D+GA+ L DLE Sbjct: 54 IAGQPFVVLNSGEKGGDSFGVQIKGANDQGAS--GALSSDLE 93
>MUCDL_MOUSE (Q8VHF2) Mucin and cadherin-like protein precursor| (Mu-protocadherin) Length = 831 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +1 Query: 4 PVLPPRPHSRAPDPRTLTPPHAIPLA 81 P+ PP P S +P P + TPP P A Sbjct: 716 PLRPPSPMSSSPTPPSSTPPSPQPKA 741
>HSP7F_ASHGO (Q74ZJ0) Heat shock protein homolog SSE1| Length = 697 Score = 28.1 bits (61), Expect = 5.7 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +2 Query: 242 IAVAINEMSKRKSPALAALADGNRLAGE 325 I + +NE+S R +P+L NR GE Sbjct: 24 IDIVVNEVSNRSTPSLVGFGQKNRFLGE 51
>HCN2_HUMAN (Q9UL51) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 (Brain cyclic nucleotide gated channel 2) (BCNG-2) Length = 889 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = +3 Query: 6 RAPAPSTLASSRSPNPDPPACHPTSPLA-RSP 98 R P P ++ SP P PPA P +P + R+P Sbjct: 759 RRPPPGPAPAAASPGPPPPASPPGAPASPRAP 790
>HSP7F_SACCA (Q875V0) Heat shock protein homolog SSE1| Length = 685 Score = 28.1 bits (61), Expect = 5.7 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +2 Query: 242 IAVAINEMSKRKSPALAALADGNRLAGE 325 I + +NE+S R +P+L NR GE Sbjct: 24 IDIVVNEVSNRSTPSLVGFGQKNRFLGE 51
>ATPL_AQUAE (O66564) ATP synthase C chain (EC 3.6.3.14) (Lipid-binding protein)| Length = 100 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = -3 Query: 334 GRLLAGEAVAVGQRGERGGLALGHLVDGDGDRGAARREVLGRDLEPL 194 G L G +A+G G G+ +GH V G G AR G L+ L Sbjct: 29 GLLYLGAGLAIGLAGLGAGVGMGHAVRGT-QEGVARNPNAGGRLQTL 74
>HSP7F_SACKL (Q875P5) Heat shock protein homolog SSE1| Length = 693 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +2 Query: 242 IAVAINEMSKRKSPALAALADGNRLAGE 325 I + +NE+S R +P+L NR GE Sbjct: 24 IDIIVNEVSNRSTPSLVGFGQKNRFLGE 51
>3MGH_CORGL (Q8NU33) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 189 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -3 Query: 337 AGRLLAGEAVAVGQRGERGGLALGHLVDGDGDRGAA 230 AG +++GE++A +RGE G+ L G G+ G A Sbjct: 93 AGEVVSGESIAQSRRGE--GIPHARLAQGPGNFGQA 126
>EM4_WHEAT (P42755) Em protein H5| Length = 93 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/38 (39%), Positives = 18/38 (47%) Frame = -3 Query: 319 GEAVAVGQRGERGGLALGHLVDGDGDRGAARREVLGRD 206 GE V G G + A HL DG G R+E LG + Sbjct: 18 GETVVPGGTGGKSLEAQEHLADGRSRGGETRKEQLGEE 55
>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional| activator IE175) (Alpha-4 protein) Length = 1298 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = +3 Query: 3 SRAPAPSTLASSRSPNPDPPACHPTSPLA 89 +RAP P+ S P P+P P +P A Sbjct: 760 ARAPLPAPAPPSTPPGPEPAPAQPAAPRA 788
>IF2_XANC8 (Q4UWA2) Translation initiation factor IF-2| Length = 902 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +3 Query: 9 APAPSTLASSRSPNPDPPACHPTSPLARSP 98 APAPS+ ++R+P+ A P P SP Sbjct: 192 APAPSSAPAARAPSSPSSAPRPARPAGASP 221
>HSP7F_CANAL (Q96VB9) Heat shock protein homolog SSE1 (Chaperone protein MSI3)| Length = 702 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = +2 Query: 179 IDLGSEWLKVAAEHLAPGRAPIAVAINEMSKRKSPALAALADGNRLAGEEA 331 +DLG+ +A A R I + +NE+S R +P+L +R GE A Sbjct: 7 VDLGNNNTVIAC---AKNRG-IDIVVNEVSNRSTPSLVGFGHKSRYLGESA 53
>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170) Length = 1214 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +1 Query: 7 VLPPRPHSRAPDPRTLTPPHAIP 75 V PP PH +P P TPP +P Sbjct: 1040 VPPPGPHGPSPFPNQQTPPSMMP 1062
>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556| Length = 348 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/32 (50%), Positives = 18/32 (56%) Frame = +3 Query: 3 SRAPAPSTLASSRSPNPDPPACHPTSPLARSP 98 SRA P T A S P P PPA +SP A +P Sbjct: 220 SRAGCP-TAAGSLLPAPRPPASSASSPQAAAP 250
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%) Frame = +3 Query: 6 RAPAPSTLASSRSPNPDPPACH---PTSPLARSP 98 R+P+P RSP+P PP P+ P RSP Sbjct: 542 RSPSPPPARRRRSPSPPPPPRRRRSPSLPRRRSP 575
>IF2_XANCP (Q8P7U7) Translation initiation factor IF-2| Length = 916 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +3 Query: 9 APAPSTLASSRSPNPDPPACHPTSPLARSP 98 APAPS+ ++R+P+ A P P SP Sbjct: 206 APAPSSAPAARAPSSPSSAPRPARPAGASP 235
>HSP79_YEAST (P32590) Heat shock protein homolog SSE2| Length = 692 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +2 Query: 242 IAVAINEMSKRKSPALAALADGNRLAGE 325 I V +NE+S R +P+L NR GE Sbjct: 23 IDVVVNEVSNRSTPSLVGFGPRNRYLGE 50
>APBB1_MOUSE (Q9QXJ1) Amyloid beta A4 precursor protein-binding family B member| 1 (Fe65 protein) Length = 710 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%) Frame = +2 Query: 197 WLKVAAEHLAPGRAPIAV--AINEMSKRKSPALAALADG 307 W+++ E LAPGR+ +AV I ++S K+ +A G Sbjct: 377 WVEMTEEELAPGRSSVAVNNCIRQLSYHKNNLHDPMAGG 415
>BCCP_ARATH (Q42533) Biotin carboxyl carrier protein of acetyl-CoA carboxylase,| chloroplast precursor (BCCP) Length = 280 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = +3 Query: 9 APAPSTLASSRSPNPDPPACHPTSPLARSP 98 APAPST AS P+P PA + P +SP Sbjct: 181 APAPSTPASLPPPSPPTPA-KSSLPTVKSP 209
>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170) Length = 1213 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +1 Query: 7 VLPPRPHSRAPDPRTLTPPHAIP 75 V PP PH +P P TPP +P Sbjct: 1040 VPPPGPHGPSPFPNQPTPPSMMP 1062
>NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)| (214 kDa nucleoporin) (CAN protein) Length = 2090 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +3 Query: 3 SRAPAPSTLASSRSPNPDPPACHPTSPLARS 95 S +P PS + +SP PPA P SP A+S Sbjct: 655 SSSPVPSMV--QKSPRITPPAAKPGSPQAKS 683
>BORG5_HUMAN (Q00587) Cdc42 effector protein 1 (Binder of Rho GTPases 5) (Serum| protein MSE55) Length = 391 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = +3 Query: 9 APAPSTLASSRSP--NPDPPACHPTSPLARSP 98 A P+T A+ +P NP PA PT P A P Sbjct: 243 ANPPATTANPPAPAANPSAPAATPTGPAANPP 274
>EMB5_MAIZE (P46517) Late embryogenesis abundant protein EMB564| Length = 91 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = -3 Query: 319 GEAVAVGQRGERGGLALGHLVDGDGDRGAARREVLGR 209 GE V G G + A HL +G G RRE LG+ Sbjct: 18 GETVVPGGTGGKSVEAQEHLAEGRSRGGQTRREQLGQ 54 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,620,260 Number of Sequences: 219361 Number of extensions: 500046 Number of successful extensions: 5170 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 4096 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5118 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
