ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl04e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KRIT1_MOUSE (Q6S5J6) Krev interaction trapped protein 1 (Krev in... 28 6.6
2L_MUMPM (P30929) Large structural protein (Protein L) (Transcrip... 28 8.6

>KRIT1_MOUSE (Q6S5J6) Krev interaction trapped protein 1 (Krev interaction|
           trapped 1) (Cerebral cavernous malformations 1 protein
           homolog)
          Length = 736

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +1

Query: 25  SELELGLLSLAVASSKP*RHRQEGPPGSQIAAAMESPVK-EEVGGELAMEIESSVTAED 198
           SE+  G+L   V ++KP     +G  G ++    + P+  E+ G E A+ I  SV  ++
Sbjct: 62  SEIAQGILDYVVETTKPISPANQGIKGKRVVLMRKFPLDGEKTGREAALFIVPSVVKDN 120



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>L_MUMPM (P30929) Large structural protein (Protein L) (Transcriptase)|
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2261

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 159  LPADLLLHGALHRGGDLAPRRAFLPMPLGF 70
            LP +++ + +L   G+  P+R F P+P  F
Sbjct: 1828 LPGEIIWYNSLFNSGENPPQRNFAPLPTQF 1857


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.129    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,816,113
Number of Sequences: 219361
Number of extensions: 344804
Number of successful extensions: 1038
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 80,573,946
effective HSP length: 41
effective length of database: 71,580,145
effective search space used: 1717923480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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