ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl04e01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK111883.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 6e-31
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 137 4e-29
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 137 4e-29
4emb|AL713936.4|CNS07YPH Oryza sativa chromosome 12, . BAC OJ1057... 137 4e-29
5ref|NM_005180.5| Homo sapiens B lymphoma Mo-MLV insertion region... 46 0.10
6emb|AL158211.29| Human DNA sequence from clone RP11-573G6 on chr... 46 0.10
7gb|BC011652.2| Homo sapiens polycomb group ring finger 4, mRNA (... 46 0.10
8gb|L13689.1|HUMBMI1X Human prot-oncogene (BMI-1) mRNA, complete cds 46 0.10
9gb|AC132612.3| Mus musculus BAC clone RP23-388L8 from chromosome... 42 1.6
10gb|AC132133.1| Mus musculus BAC clone RP23-242A12 from 17, compl... 42 1.6
11emb|BX957306.12| Zebrafish DNA sequence from clone DKEY-119H24 i... 42 1.6
12gb|AC096039.7| Rattus norvegicus 4 BAC CH230-29I22 (Children's H... 42 1.6
13gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.6
14gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold 42 1.6
15gb|AC158313.7| Mus musculus chromosome 8, clone RP23-246H16, com... 42 1.6
16gb|AC153881.4| Mus musculus 10 BAC RP23-257B9 (Roswell Park Canc... 42 1.6
17gb|AF135793.1|AF135793 Fundulus heteroclitus sister of P-glycopr... 42 1.6
18gb|AC116825.23| Mus musculus chromosome 8, clone RP24-367H14, co... 40 6.5
19ref|NM_118797.3| Arabidopsis thaliana unknown protein AT4G26630 ... 40 6.5
20ref|NM_001036647.1| Arabidopsis thaliana unknown protein AT4G266... 40 6.5
21ref|NM_186089.2| Oryza sativa (japonica cultivar-group), mRNA 40 6.5
22ref|XM_506548.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 6.5
23gb|AC119288.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
24gb|AY023232.1| Oryza sativa microsatellite MRG5557 containing (G... 40 6.5
25gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 6.5
26gb|AC164703.3| Mus musculus BAC clone RP23-266K19 from chromosom... 40 6.5
27gb|AC137614.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
28gb|AY491681.1| Triticum monococcum DV92 BAC 109N23, complete seq... 40 6.5
29gb|AC124508.5| Mus musculus BAC clone RP23-433B5 from chromosome... 40 6.5
30emb|CT009510.7| Mouse DNA sequence from clone RP23-47H16 on chro... 40 6.5
31ref|XM_801799.1| Trypanosoma cruzi strain CL Brener transcriptio... 40 6.5
32ref|XM_807630.1| Trypanosoma cruzi strain CL Brener transcriptio... 40 6.5
33gb|AC129544.7| Mus musculus chromosome 12, clone RP23-258H6, com... 40 6.5
34gb|AC152752.18| Medicago truncatula clone mth2-89c9, complete se... 40 6.5
35gb|AC104276.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
36gb|AC116842.6| Mus musculus, clone RP24-390P7, complete sequence 40 6.5
37gb|AC095390.9| Rattus norvegicus 12 BAC CH230-7C24 (Children's H... 40 6.5
38emb|AL137162.25| Human DNA sequence from clone RP5-843L14 on chr... 40 6.5
39emb|AL031430.2|HS406M12 Human DNA sequence from clone RP3-406M12... 40 6.5
40gb|AC164299.2| Mus musculus BAC clone RP23-313K8 from chromosome... 40 6.5
41gb|AC157546.7| Mus musculus chromosome 19, clone RP23-325I11, co... 40 6.5
42emb|AL662843.11| Mouse DNA sequence from clone RP23-411E22 on ch... 40 6.5
43emb|AL161565.2|ATCHRIV65 Arabidopsis thaliana DNA chromosome 4, ... 40 6.5
44emb|AL078465.1|ATT15N24 Arabidopsis thaliana DNA chromosome 4, B... 40 6.5
45gb|BT008491.1| Arabidopsis thaliana At4g26630 gene, complete cds 40 6.5
46emb|AJ719537.1| Gallus gallus mRNA for hypothetical protein, clo... 40 6.5
47ref|NM_001006152.1| Gallus gallus protein phosphatase 2 (formerl... 40 6.5
48gb|AC010660.6| Drosophila melanogaster 3L BAC RP98-9I16 (Roswell... 40 6.5
49tpg|BK002178.1| TPA: TPA_inf: Drosophila melanogaster HDC10482 (... 40 6.5
50gb|AC079262.28| Homo sapiens 12 BAC RP11-560H17 (Roswell Park Ca... 40 6.5
51gb|AY093124.1| Arabidopsis thaliana putative protein (At4g26630)... 40 6.5
52gb|AC079317.25| Homo sapiens 12 BAC RP11-4K23 (Roswell Park Canc... 40 6.5
53gb|AF139373.2| Mus musculus calpain small subunit gene, exons 3 ... 40 6.5
54gb|AC020556.7| Homo sapiens BAC clone RP11-507B10 from 4, comple... 40 6.5
55ref|XM_628287.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 6.5
56gb|AC159880.2| Mus musculus BAC clone RP24-490L14 from chromosom... 40 6.5
57dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
58dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
59gb|AC019106.3| Homo sapiens BAC clone RP11-479L11 from 2, comple... 40 6.5
60ref|XM_218939.3| PREDICTED: Rattus norvegicus hepatitis B virus ... 40 6.5
61dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
62dbj|AP003743.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
63dbj|AK071159.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
64emb|AL359792.3|CNS05TF1 Human chromosome 14 DNA sequence BAC R-7... 40 6.5
65gb|AC155260.2| Mus musculus BAC clone RP24-71G3 from 12, complet... 40 6.5
66emb|AL954744.8| Zebrafish DNA sequence from clone DKEY-119M7 in ... 40 6.5
67dbj|AK060587.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
68gb|AC004811.2|AC004811 Homo sapiens clone 162B15, complete sequence 40 6.5
69gb|AE003527.3| Drosophila melanogaster chromosome 3L, section 58... 40 6.5
70gb|AC115835.6| Mus musculus chromosome 3, clone RP24-184C18, com... 40 6.5
71emb|AL807747.10| Mouse DNA sequence from clone RP23-300N21 on ch... 40 6.5
72emb|AL845271.10| Mouse DNA sequence from clone RP23-119O19 on ch... 40 6.5
73gb|AC140213.2| Mus musculus BAC clone RP23-270L5 from 7, complet... 40 6.5
74gb|AC134987.5| Mus musculus BAC clone RP23-117E24 from 14, compl... 40 6.5
75emb|CT025619.9| Mouse DNA sequence from clone RP23-442M18 on chr... 40 6.5
76dbj|AB216749.1| Equus caballus DNA, microsatellite TKY2806 40 6.5
77gb|AC138622.4| Mus musculus BAC clone RP23-100J15 from chromosom... 40 6.5
78emb|AL929443.4| Mouse DNA sequence from clone RP23-467A7 on chro... 40 6.5 
>dbj|AK111883.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033060M06, full
           insert sequence
          Length = 2847

 Score =  143 bits (72), Expect = 6e-31
 Identities = 99/108 (91%)
 Strand = Plus / Plus

                                                                       
Query: 371 ctttcaatgcatcgtgtcgggagtgctggaaacacggccggttcaagtcgaccgagaaag 430
           ||||||||||||||||| || |||||||| |||||||| |||||||||||||||||||||
Sbjct: 162 ctttcaatgcatcgtgttggaagtgctggtaacacggcaggttcaagtcgaccgagaaag 221

                                                           
Query: 431 gagaaacgcttcacatatgtgctcaatgatgctgataataaaaagcat 478
           ||||| ||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct: 222 gagaagcgctttacatatgtgctgaatgacgctgataacaaaaagcat 269
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  137 bits (69), Expect = 4e-29
 Identities = 96/105 (91%)
 Strand = Plus / Minus

                                                                           
Query: 371     ctttcaatgcatcgtgtcgggagtgctggaaacacggccggttcaagtcgaccgagaaag 430
               ||||||||||||||||| || |||||||| |||||||| |||||||||||||||||||||
Sbjct: 3314661 ctttcaatgcatcgtgttggaagtgctggtaacacggcaggttcaagtcgaccgagaaag 3314602

                                                            
Query: 431     gagaaacgcttcacatatgtgctcaatgatgctgataataaaaag 475
               ||||| ||||| ||||||||||| ||||| |||||||| ||||||
Sbjct: 3314601 gagaagcgctttacatatgtgctgaatgacgctgataacaaaaag 3314557
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  137 bits (69), Expect = 4e-29
 Identities = 96/105 (91%)
 Strand = Plus / Minus

                                                                           
Query: 371     ctttcaatgcatcgtgtcgggagtgctggaaacacggccggttcaagtcgaccgagaaag 430
               ||||||||||||||||| || |||||||| |||||||| |||||||||||||||||||||
Sbjct: 3314606 ctttcaatgcatcgtgttggaagtgctggtaacacggcaggttcaagtcgaccgagaaag 3314547

                                                            
Query: 431     gagaaacgcttcacatatgtgctcaatgatgctgataataaaaag 475
               ||||| ||||| ||||||||||| ||||| |||||||| ||||||
Sbjct: 3314546 gagaagcgctttacatatgtgctgaatgacgctgataacaaaaag 3314502
to top
>emb|AL713936.4|CNS07YPH Oryza sativa chromosome 12, . BAC OJ1057_G11 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 109081

 Score =  137 bits (69), Expect = 4e-29
 Identities = 96/105 (91%)
 Strand = Plus / Minus

                                                                          
Query: 371    ctttcaatgcatcgtgtcgggagtgctggaaacacggccggttcaagtcgaccgagaaag 430
              ||||||||||||||||| || |||||||| |||||||| |||||||||||||||||||||
Sbjct: 105047 ctttcaatgcatcgtgttggaagtgctggtaacacggcaggttcaagtcgaccgagaaag 104988

                                                           
Query: 431    gagaaacgcttcacatatgtgctcaatgatgctgataataaaaag 475
              ||||| ||||| ||||||||||| ||||| |||||||| ||||||
Sbjct: 104987 gagaagcgctttacatatgtgctgaatgacgctgataacaaaaag 104943
to top
>ref|NM_005180.5| Homo sapiens B lymphoma Mo-MLV insertion region (mouse) (BMI1),
           mRNA
          Length = 3251

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 191 cctcctcctcctcctaatctgccgctgccgtctcctcccgctc 233
           |||||||||||||||  || ||||| |||| ||||||||||||
Sbjct: 199 cctcctcctcctcctcctcggccgccgccgcctcctcccgctc 157
to top
>emb|AL158211.29| Human DNA sequence from clone RP11-573G6 on chromosome 10 Contains a
             ribosomal protein L31 (RPL31) pseudogene, the BUP gene for
             BUP protein, the BMI1 gene for B lymphoma Mo-MLV insertion
             region (mouse) (MGC12685), the 5' end of the SPAG6 gene
             for sperm associated antigen 6 (pf16, MGC26276,
             Repro-SA-1,DKFZp434I153), the 5' end of a novel gene and
             seven CpG islands, complete sequence
          Length = 138094

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                        
Query: 191   cctcctcctcctcctaatctgccgctgccgtctcctcccgctc 233
             |||||||||||||||  || ||||| |||| ||||||||||||
Sbjct: 76416 cctcctcctcctcctcctcggccgccgccgcctcctcccgctc 76374
to top
>gb|BC011652.2| Homo sapiens polycomb group ring finger 4, mRNA (cDNA clone
           MGC:12685 IMAGE:4138748), complete cds
          Length = 3251

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 191 cctcctcctcctcctaatctgccgctgccgtctcctcccgctc 233
           |||||||||||||||  || ||||| |||| ||||||||||||
Sbjct: 199 cctcctcctcctcctcctcggccgccgccgcctcctcccgctc 157
to top
>gb|L13689.1|HUMBMI1X Human prot-oncogene (BMI-1) mRNA, complete cds
          Length = 3203

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 191 cctcctcctcctcctaatctgccgctgccgtctcctcccgctc 233
           |||||||||||||||  || ||||| |||| ||||||||||||
Sbjct: 173 cctcctcctcctcctcctcggccgccgccgcctcctcccgctc 131
to top
>gb|AC132612.3| Mus musculus BAC clone RP23-388L8 from chromosome 17, complete sequence
          Length = 203810

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 450    tgctcaatgatgctgataataaaaa 474
              |||||||| ||||||||||||||||
Sbjct: 143680 tgctcaataatgctgataataaaaa 143656
to top
>gb|AC132133.1| Mus musculus BAC clone RP23-242A12 from 17, complete sequence
          Length = 174152

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 450   tgctcaatgatgctgataataaaaa 474
             |||||||| ||||||||||||||||
Sbjct: 25726 tgctcaataatgctgataataaaaa 25702
to top
>emb|BX957306.12| Zebrafish DNA sequence from clone DKEY-119H24 in linkage group 1,
              complete sequence
          Length = 224487

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 454    caatgatgctgataataaaaa 474
              |||||||||||||||||||||
Sbjct: 128825 caatgatgctgataataaaaa 128805
to top
>gb|AC096039.7| Rattus norvegicus 4 BAC CH230-29I22 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 224101

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 190   tcctcctcctcctcctaatct 210
             |||||||||||||||||||||
Sbjct: 81491 tcctcctcctcctcctaatct 81511
to top
>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 96      tatccaccccaaccagatcga 116
               |||||||||||||||||||||
Sbjct: 3303050 tatccaccccaaccagatcga 3303030
to top
>gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold
          Length = 470930

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 186   gagttcctcctcctcctccta 206
             |||||||||||||||||||||
Sbjct: 26193 gagttcctcctcctcctccta 26213
to top
>gb|AC158313.7| Mus musculus chromosome 8, clone RP23-246H16, complete sequence
          Length = 168864

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 185   cgagttcctcctcctcctcct 205
             |||||||||||||||||||||
Sbjct: 62721 cgagttcctcctcctcctcct 62701
to top
>gb|AC153881.4| Mus musculus 10 BAC RP23-257B9 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 208992

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 190   tcctcctcctcctcctaatct 210
             |||||||||||||||||||||
Sbjct: 90211 tcctcctcctcctcctaatct 90191
to top
>gb|AF135793.1|AF135793 Fundulus heteroclitus sister of P-glycoprotein (spgp) mRNA, partial
           cds
          Length = 3004

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 185 cgagttcctcctcctcctcct 205
           |||||||||||||||||||||
Sbjct: 538 cgagttcctcctcctcctcct 518
to top
>gb|AC116825.23| Mus musculus chromosome 8, clone RP24-367H14, complete sequence
          Length = 182808

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   ttcctcctcctcctcctaat 208
             ||||||||||||||||||||
Sbjct: 63490 ttcctcctcctcctcctaat 63509
to top
>ref|NM_118797.3| Arabidopsis thaliana unknown protein AT4G26630 transcript variant
            AT4G26630.1 mRNA, complete cds
          Length = 2786

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 189  ttcctcctcctcctcctaatctgc 212
            ||||||||||||||||| ||||||
Sbjct: 2390 ttcctcctcctcctcctcatctgc 2367
to top
>ref|NM_001036647.1| Arabidopsis thaliana unknown protein AT4G26630 transcript variant
            AT4G26630.2 mRNA, complete cds
          Length = 2731

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 189  ttcctcctcctcctcctaatctgc 212
            ||||||||||||||||| ||||||
Sbjct: 2316 ttcctcctcctcctcctcatctgc 2293
to top
>ref|NM_186089.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1687

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 190 tcctcctcctcctcctaatc 209
           ||||||||||||||||||||
Sbjct: 176 tcctcctcctcctcctaatc 157
to top
>ref|XM_506548.1| PREDICTED Oryza sativa (japonica cultivar-group), P0450A04.117 mRNA
          Length = 1949

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 190 tcctcctcctcctcctaatc 209
           ||||||||||||||||||||
Sbjct: 231 tcctcctcctcctcctaatc 212
to top
>gb|AC119288.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0017J22, complete sequence
          Length = 177153

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   gagttcctcctcctcctcct 205
             ||||||||||||||||||||
Sbjct: 75993 gagttcctcctcctcctcct 75974
to top
>gb|AY023232.1| Oryza sativa microsatellite MRG5557 containing (GGA)X8, genomic
           sequence
          Length = 224

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 186 gagttcctcctcctcctcct 205
           ||||||||||||||||||||
Sbjct: 128 gagttcctcctcctcctcct 109
to top
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 108    ccagatcgatcggcggcaccttct 131
              ||||||||| ||||||||||||||
Sbjct: 691680 ccagatcgaacggcggcaccttct 691657
to top
>gb|AC164703.3| Mus musculus BAC clone RP23-266K19 from chromosome 7, complete sequence
          Length = 238433

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    ttcctcctcctcctcctaat 208
              ||||||||||||||||||||
Sbjct: 232760 ttcctcctcctcctcctaat 232741
to top
>gb|AC137614.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0034O12, complete sequence
          Length = 156263

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   gagttcctcctcctcctcct 205
             ||||||||||||||||||||
Sbjct: 12142 gagttcctcctcctcctcct 12123
to top
>gb|AY491681.1| Triticum monococcum DV92 BAC 109N23, complete sequence
          Length = 101101

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 190   tcctcctcctcctcctaatctgcc 213
             |||||||||||||||| |||||||
Sbjct: 17921 tcctcctcctcctcctcatctgcc 17898
to top
>gb|AC124508.5| Mus musculus BAC clone RP23-433B5 from chromosome 7, complete sequence
          Length = 188011

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   tcctcctcctcctcctaatc 209
             ||||||||||||||||||||
Sbjct: 56276 tcctcctcctcctcctaatc 56257
to top
>emb|CT009510.7| Mouse DNA sequence from clone RP23-47H16 on chromosome 14, complete
              sequence
          Length = 209623

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    gagttcctcctcctcctcct 205
              ||||||||||||||||||||
Sbjct: 176662 gagttcctcctcctcctcct 176681
to top
>ref|XM_801799.1| Trypanosoma cruzi strain CL Brener transcription elongation factor
            S-II (Tc00.1047053511115.40) partial mRNA
          Length = 1434

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 275  tccgctgatctcgtctgctg 294
            ||||||||||||||||||||
Sbjct: 1373 tccgctgatctcgtctgctg 1354
to top
>ref|XM_807630.1| Trypanosoma cruzi strain CL Brener transcription elongation
            factor-like protein (Tc00.1047053507715.30) partial mRNA
          Length = 1434

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 275  tccgctgatctcgtctgctg 294
            ||||||||||||||||||||
Sbjct: 1373 tccgctgatctcgtctgctg 1354
to top
>gb|AC129544.7| Mus musculus chromosome 12, clone RP23-258H6, complete sequence
          Length = 232275

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 186    gagttcctcctcctcctcct 205
              ||||||||||||||||||||
Sbjct: 204832 gagttcctcctcctcctcct 204813
to top
>gb|AC152752.18| Medicago truncatula clone mth2-89c9, complete sequence
          Length = 117577

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    tcctcctcctcctcctaatc 209
              ||||||||||||||||||||
Sbjct: 117117 tcctcctcctcctcctaatc 117136
to top
>gb|AC104276.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1231_F08,
             complete sequence
          Length = 118049

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   gagttcctcctcctcctcct 205
             ||||||||||||||||||||
Sbjct: 13793 gagttcctcctcctcctcct 13774
to top
>gb|AC116842.6| Mus musculus, clone RP24-390P7, complete sequence
          Length = 132907

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   gagttcctcctcctcctcct 205
             ||||||||||||||||||||
Sbjct: 80338 gagttcctcctcctcctcct 80319
to top
>gb|AC095390.9| Rattus norvegicus 12 BAC CH230-7C24 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 226532

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    ttcctcctcctcctcctaat 208
              ||||||||||||||||||||
Sbjct: 127515 ttcctcctcctcctcctaat 127496
to top
>emb|AL137162.25| Human DNA sequence from clone RP5-843L14 on chromosome 20 Contains a
             putative novel gene and the RPS4L gene for a pseudogene
             similar to part of X-linked ribosomal protein S4 (RPS4X),
             complete sequence
          Length = 57759

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   tcctcctcctcctcctaatc 209
             ||||||||||||||||||||
Sbjct: 29882 tcctcctcctcctcctaatc 29863
to top
>emb|AL031430.2|HS406M12 Human DNA sequence from clone RP3-406M12 on chromosome 1p34.1-34.3
              Contains a CpG island, complete sequence
          Length = 159281

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    tcctcctcctcctcctaatc 209
              ||||||||||||||||||||
Sbjct: 117294 tcctcctcctcctcctaatc 117313
to top
>gb|AC164299.2| Mus musculus BAC clone RP23-313K8 from chromosome 1, complete sequence
          Length = 160562

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    tcctcctcctcctcctaatc 209
              ||||||||||||||||||||
Sbjct: 110822 tcctcctcctcctcctaatc 110841
to top
>gb|AC157546.7| Mus musculus chromosome 19, clone RP23-325I11, complete sequence
          Length = 173513

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   ttcctcctcctcctcctaat 208
             ||||||||||||||||||||
Sbjct: 89807 ttcctcctcctcctcctaat 89788
to top
>emb|AL662843.11| Mouse DNA sequence from clone RP23-411E22 on chromosome 11 Contains the
             3' end of the Col23a1 gene for procollagen (type XXIII,
             alpha 1), the 5' end of a novel gene and a CpG island,
             complete sequence
          Length = 155917

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   tcctcctcctcctcctaatc 209
             ||||||||||||||||||||
Sbjct: 86045 tcctcctcctcctcctaatc 86064
to top
>emb|AL161565.2|ATCHRIV65 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 65
          Length = 198320

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 189    ttcctcctcctcctcctaatctgc 212
              ||||||||||||||||| ||||||
Sbjct: 128117 ttcctcctcctcctcctcatctgc 128140
to top
>emb|AL078465.1|ATT15N24 Arabidopsis thaliana DNA chromosome 4, BAC clone T15N24 (ESSA project)
          Length = 92657

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 189   ttcctcctcctcctcctaatctgc 212
             ||||||||||||||||| ||||||
Sbjct: 59985 ttcctcctcctcctcctcatctgc 60008
to top
>gb|BT008491.1| Arabidopsis thaliana At4g26630 gene, complete cds
          Length = 1209

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 189  ttcctcctcctcctcctaatctgc 212
            ||||||||||||||||| ||||||
Sbjct: 1140 ttcctcctcctcctcctcatctgc 1117
to top
>emb|AJ719537.1| Gallus gallus mRNA for hypothetical protein, clone 3c21
          Length = 1854

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 190 tcctcctcctcctcctaatctgccgctgccgtctcc 225
           |||||||||||||||| | | || ||||||||||||
Sbjct: 182 tcctcctcctcctcctcaccagctgctgccgtctcc 147
to top
>ref|NM_001006152.1| Gallus gallus protein phosphatase 2 (formerly 2A), catalytic
           subunit, alpha isoform (PPP2CA), mRNA
          Length = 1854

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 190 tcctcctcctcctcctaatctgccgctgccgtctcc 225
           |||||||||||||||| | | || ||||||||||||
Sbjct: 182 tcctcctcctcctcctcaccagctgctgccgtctcc 147
to top
>gb|AC010660.6| Drosophila melanogaster 3L BAC RP98-9I16 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 186795

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    tcctcctcctcctcctaatc 209
              ||||||||||||||||||||
Sbjct: 112293 tcctcctcctcctcctaatc 112312
to top
>tpg|BK002178.1| TPA: TPA_inf: Drosophila melanogaster HDC10482 (HDC10482) gene,
           complete cds
          Length = 808

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 190 tcctcctcctcctcctaatc 209
           ||||||||||||||||||||
Sbjct: 34  tcctcctcctcctcctaatc 53
to top
>gb|AC079262.28| Homo sapiens 12 BAC RP11-560H17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 208686

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   gagttcctcctcctcctcct 205
             ||||||||||||||||||||
Sbjct: 97161 gagttcctcctcctcctcct 97142
to top
>gb|AY093124.1| Arabidopsis thaliana putative protein (At4g26630) mRNA, complete cds
          Length = 1879

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 189  ttcctcctcctcctcctaatctgc 212
            ||||||||||||||||| ||||||
Sbjct: 1506 ttcctcctcctcctcctcatctgc 1483
to top
>gb|AC079317.25| Homo sapiens 12 BAC RP11-4K23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 147862

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   gagttcctcctcctcctcct 205
             ||||||||||||||||||||
Sbjct: 86535 gagttcctcctcctcctcct 86516
to top
>gb|AF139373.2| Mus musculus calpain small subunit gene, exons 3 through 11 and
            partial cds; and cox7ah gene, exons 1 through 4 and
            complete cds
          Length = 9607

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 189  ttcctcctcctcctcctaat 208
            ||||||||||||||||||||
Sbjct: 5646 ttcctcctcctcctcctaat 5665
to top
>gb|AC020556.7| Homo sapiens BAC clone RP11-507B10 from 4, complete sequence
          Length = 186092

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 189   ttcctcctcctcctcctaatctgccgctgccgtctcctcc 228
             |||||||||||||||||  |||||||| |||  |||||||
Sbjct: 85953 ttcctcctcctcctcctcctctgccgccgcctcctcctcc 85992
to top
>ref|XM_628287.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd7_1010),
            partial mRNA
          Length = 17499

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  tcctcctcctcctcctaatc 209
            ||||||||||||||||||||
Sbjct: 4491 tcctcctcctcctcctaatc 4472
to top
>gb|AC159880.2| Mus musculus BAC clone RP24-490L14 from chromosome 9, complete sequence
          Length = 142451

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   tcctcctcctcctcctaatc 209
             ||||||||||||||||||||
Sbjct: 58071 tcctcctcctcctcctaatc 58090
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 190      tcctcctcctcctcctaatc 209
                ||||||||||||||||||||
Sbjct: 28119870 tcctcctcctcctcctaatc 28119851



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 186     gagttcctcctcctcctcct 205
               ||||||||||||||||||||
Sbjct: 5128215 gagttcctcctcctcctcct 5128234
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 186     gagttcctcctcctcctcct 205
               ||||||||||||||||||||
Sbjct: 3446511 gagttcctcctcctcctcct 3446492
to top
>gb|AC019106.3| Homo sapiens BAC clone RP11-479L11 from 2, complete sequence
          Length = 198540

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 334   cttttgctggctactccaattttt 357
             |||||||||||||||| |||||||
Sbjct: 68852 cttttgctggctactcaaattttt 68829
to top
>ref|XM_218939.3| PREDICTED: Rattus norvegicus hepatitis B virus x associated protein
            (predicted) (Hbxap_predicted), mRNA
          Length = 5158

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 189  ttcctcctcctcctcctaatctgc 212
            ||||||||||||||||| ||||||
Sbjct: 4020 ttcctcctcctcctcctcatctgc 3997
to top
>dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0450A04
          Length = 162545

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 190    tcctcctcctcctcctaatc 209
              ||||||||||||||||||||
Sbjct: 103166 tcctcctcctcctcctaatc 103147
to top
>dbj|AP003743.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1118_E12
          Length = 119691

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   gagttcctcctcctcctcct 205
             ||||||||||||||||||||
Sbjct: 84382 gagttcctcctcctcctcct 84401
to top
>dbj|AK071159.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078O15, full
           insert sequence
          Length = 1687

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 190 tcctcctcctcctcctaatc 209
           ||||||||||||||||||||
Sbjct: 176 tcctcctcctcctcctaatc 157
to top
>emb|AL359792.3|CNS05TF1 Human chromosome 14 DNA sequence BAC R-794A8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 180353

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 188   gttcctcctcctcctcctaatctg 211
             ||||| ||||||||||||||||||
Sbjct: 49656 gttccccctcctcctcctaatctg 49679
to top
>gb|AC155260.2| Mus musculus BAC clone RP24-71G3 from 12, complete sequence
          Length = 190003

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    gagttcctcctcctcctcct 205
              ||||||||||||||||||||
Sbjct: 110458 gagttcctcctcctcctcct 110477
to top
>emb|AL954744.8| Zebrafish DNA sequence from clone DKEY-119M7 in linkage group 20,
              complete sequence
          Length = 166911

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     aaaaccccgcccacttctca 82
              ||||||||||||||||||||
Sbjct: 154847 aaaaccccgcccacttctca 154866
to top
>dbj|AK060587.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-B07, full
           insert sequence
          Length = 1948

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 190 tcctcctcctcctcctaatc 209
           ||||||||||||||||||||
Sbjct: 231 tcctcctcctcctcctaatc 212
to top
>gb|AC004811.2|AC004811 Homo sapiens clone 162B15, complete sequence
          Length = 62836

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   gagttcctcctcctcctcct 205
             ||||||||||||||||||||
Sbjct: 12132 gagttcctcctcctcctcct 12113
to top
>gb|AE003527.3| Drosophila melanogaster chromosome 3L, section 58 of 83 of the complete
             sequence
          Length = 279904

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   tcctcctcctcctcctaatc 209
             ||||||||||||||||||||
Sbjct: 56917 tcctcctcctcctcctaatc 56936
to top
>gb|AC115835.6| Mus musculus chromosome 3, clone RP24-184C18, complete sequence
          Length = 172025

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 190    tcctcctcctcctcctaatctgcc 213
              ||||||||||||||||| ||||||
Sbjct: 105982 tcctcctcctcctcctagtctgcc 106005
to top
>emb|AL807747.10| Mouse DNA sequence from clone RP23-300N21 on chromosome 4, complete
             sequence
          Length = 228003

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   agttcctcctcctcctccta 206
             ||||||||||||||||||||
Sbjct: 75327 agttcctcctcctcctccta 75308
to top
>emb|AL845271.10| Mouse DNA sequence from clone RP23-119O19 on chromosome 2, complete
             sequence
          Length = 136949

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   tcctcctcctcctcctaatc 209
             ||||||||||||||||||||
Sbjct: 22002 tcctcctcctcctcctaatc 22021
to top
>gb|AC140213.2| Mus musculus BAC clone RP23-270L5 from 7, complete sequence
          Length = 195922

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   agttcctcctcctcctccta 206
             ||||||||||||||||||||
Sbjct: 17759 agttcctcctcctcctccta 17778
to top
>gb|AC134987.5| Mus musculus BAC clone RP23-117E24 from 14, complete sequence
          Length = 196751

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   gagttcctcctcctcctcct 205
             ||||||||||||||||||||
Sbjct: 33188 gagttcctcctcctcctcct 33207
to top
>emb|CT025619.9| Mouse DNA sequence from clone RP23-442M18 on chromosome 9, complete
             sequence
          Length = 193329

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   tcctcctcctcctcctaatc 209
             ||||||||||||||||||||
Sbjct: 82652 tcctcctcctcctcctaatc 82671
to top
>dbj|AB216749.1| Equus caballus DNA, microsatellite TKY2806
          Length = 498

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 190 tcctcctcctcctcctaatc 209
           ||||||||||||||||||||
Sbjct: 282 tcctcctcctcctcctaatc 263
to top
>gb|AC138622.4| Mus musculus BAC clone RP23-100J15 from chromosome 6, complete sequence
          Length = 194611

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   tcctcctcctcctcctaatc 209
             ||||||||||||||||||||
Sbjct: 10030 tcctcctcctcctcctaatc 10049
to top
>emb|AL929443.4| Mouse DNA sequence from clone RP23-467A7 on chromosome 2, complete
             sequence
          Length = 189821

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   ttcctcctcctcctcctaat 208
             ||||||||||||||||||||
Sbjct: 58172 ttcctcctcctcctcctaat 58153


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,644,497
Number of Sequences: 3902068
Number of extensions: 4644497
Number of successful extensions: 498762
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 496905
Number of HSP's gapped (non-prelim): 1841
length of query: 478
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 456
effective length of database: 17,147,199,772
effective search space: 7819123096032
effective search space used: 7819123096032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top