Clone Name | bastl04d08 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_197154.1| Oryza sativa (japonica cultivar-group) putative RNA-binding protein (OSJNBa0041P03.3), mRNA Length = 2650 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Plus Query: 368 tacttccaaaaagaggactcgtttcaattctgatgatggaaagaggaaacggctaaacta 427 |||||||| ||| ||| | | ||||||||||||||| |||||||||||||||||||||| Sbjct: 36 tacttccagaaaaaggccacatttcaattctgatgacggaaagaggaaacggctaaactc 95 Query: 428 caggcaggatga 439 ||||| ||||| Sbjct: 96 aaggcacgatga 107
>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete sequence Length = 139614 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 368 tacttccaaaaagaggactcgtttcaattctgatgatggaaagaggaaacggctaaacta 427 |||||||| ||| ||| | | ||||||||||||||| |||||||||||||||||||||| Sbjct: 50521 tacttccagaaaaaggccacatttcaattctgatgacggaaagaggaaacggctaaactc 50462 Query: 428 caggcaggatga 439 ||||| ||||| Sbjct: 50461 aaggcacgatga 50450
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Plus Query: 368 tacttccaaaaagaggactcgtttcaattctgatgatggaaagaggaaacggctaaacta 427 |||||||| ||| ||| | | ||||||||||||||| |||||||||||||||||||||| Sbjct: 18300249 tacttccagaaaaaggccacatttcaattctgatgacggaaagaggaaacggctaaactc 18300308 Query: 428 caggcaggatga 439 ||||| ||||| Sbjct: 18300309 aaggcacgatga 18300320
>dbj|AK066573.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072P14, full insert sequence Length = 2879 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Plus Query: 368 tacttccaaaaagaggactcgtttcaattctgatgatggaaagaggaaacggctaaacta 427 |||||||| ||| ||| | | ||||||||||||||| |||||||||||||||||||||| Sbjct: 295 tacttccagaaaaaggccacatttcaattctgatgacggaaagaggaaacggctaaactc 354 Query: 428 caggcaggatga 439 ||||| ||||| Sbjct: 355 aaggcacgatga 366
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Plus Query: 368 tacttccaaaaagaggactcgtttcaattctgatgatggaaagaggaaacggctaaacta 427 |||||||| ||| ||| | | ||||||||||||||| |||||||||||||||||||||| Sbjct: 18309902 tacttccagaaaaaggccacatttcaattctgatgacggaaagaggaaacggctaaactc 18309961 Query: 428 caggcaggatga 439 ||||| ||||| Sbjct: 18309962 aaggcacgatga 18309973
>gb|AY105428.1| Zea mays PCO136524 mRNA sequence Length = 583 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 372 tccaaaaagaggactcgtttcaattctgatgatggaaagaggaaacggctaaac 425 ||||| |||||||| | || |||||||||||| |||||||| |||||| ||||| Sbjct: 191 tccaagaagaggacacattccaattctgatgacggaaagagaaaacggttaaac 244
>gb|AC119288.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017J22, complete sequence Length = 177153 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 169 agctgccgccttcccgtggcgc 190 |||||||||||||||||||||| Sbjct: 175848 agctgccgccttcccgtggcgc 175869
>gb|AC137614.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0034O12, complete sequence Length = 156263 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 169 agctgccgccttcccgtggcgc 190 |||||||||||||||||||||| Sbjct: 111997 agctgccgccttcccgtggcgc 112018
>gb|AC104276.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1231_F08, complete sequence Length = 118049 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 169 agctgccgccttcccgtggcgc 190 |||||||||||||||||||||| Sbjct: 113649 agctgccgccttcccgtggcgc 113670
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 169 agctgccgccttcccgtggcgc 190 |||||||||||||||||||||| Sbjct: 3546366 agctgccgccttcccgtggcgc 3546387
>dbj|AK062481.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-G04, full insert sequence Length = 388 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 169 agctgccgccttcccgtggcgc 190 |||||||||||||||||||||| Sbjct: 78 agctgccgccttcccgtggcgc 57
>emb|CR724355.2|CNS0GLUX Tetraodon nigroviridis full-length cDNA Length = 1052 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 aagtacttccaaaaagaggac 385 ||||||||||||||||||||| Sbjct: 695 aagtacttccaaaaagaggac 715
>gb|DQ108581.1| Corchorus olitorius SSR marker J183-M13F genomic sequence Length = 853 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 44 ttcttttcttttcctttcgtcttcc 68 ||||||||||||| ||||||||||| Sbjct: 335 ttcttttcttttcttttcgtcttcc 359
>gb|DP000061.1| Monodelphis domestica target 117 genomic scaffold Length = 360990 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 44 ttcttttcttttcctttcgtcttccccgtcccc 76 |||||||||||||||| | |||||||| ||||| Sbjct: 109126 ttcttttcttttccttccctcttccccctcccc 109094
>gb|AC146525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0060D22 map near S6115, complete sequence Length = 139929 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 152 gccctagtcctagctccagctgccgcct 179 |||||||||||||| | ||||||||||| Sbjct: 23849 gccctagtcctagccctagctgccgcct 23876
>gb|AC163297.4| Mus musculus BAC clone RP23-106G24 from chromosome 3, complete sequence Length = 194271 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 44 ttcttttcttttcctttcgtcttc 67 ||||||||||||| |||||||||| Sbjct: 126261 ttcttttcttttcttttcgtcttc 126238
>gb|AC099728.6| Mus musculus chromosome 7, clone RP23-417I5, complete sequence Length = 205550 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 aaaatccatctcttcccaca 99 |||||||||||||||||||| Sbjct: 203289 aaaatccatctcttcccaca 203270
>gb|AC119985.6| Mus musculus chromosome 5, clone RP24-502C10, complete sequence Length = 134739 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 ccccactaccccacccaccc 233 |||||||||||||||||||| Sbjct: 10861 ccccactaccccacccaccc 10842
>gb|AC165316.4| Mus musculus chromosome 5, clone RP23-168G13, complete sequence Length = 205237 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ccccactaccccacccaccc 233 |||||||||||||||||||| Sbjct: 42333 ccccactaccccacccaccc 42352
>gb|AY526370.1| Arachis hypogaea clone PM614 microsatellite sequence Length = 246 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 ttcttttcttttcctttcgtcttc 67 |||||||||||||||||| ||||| Sbjct: 40 ttcttttcttttcctttcttcttc 63
>gb|AC107179.5| Rattus norvegicus 9 BAC CH230-155P21 (Children's Hospital Oakland Research Institute) complete sequence Length = 204235 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 ttcttttcttttcctttcgtcttc 67 |||||||||||||||||| ||||| Sbjct: 49670 ttcttttcttttcctttcttcttc 49693
>gb|AC135115.5| Mus musculus BAC clone RP24-251K13 from chromosome 10, complete sequence Length = 178241 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 gataactctagaagacacaa 361 |||||||||||||||||||| Sbjct: 134898 gataactctagaagacacaa 134879
>gb|AC124364.4| Mus musculus BAC clone RP24-538E16 from chromosome 12, complete sequence Length = 177697 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 gtacttccaaaaagaggact 386 |||||||||||||||||||| Sbjct: 125569 gtacttccaaaaagaggact 125550
>gb|AC122492.3| Mus musculus BAC clone RP24-390N7 from chromosome 5, complete sequence Length = 196275 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 tccaagtacttccaaaaaga 381 |||||||||||||||||||| Sbjct: 139074 tccaagtacttccaaaaaga 139055
>gb|AC129604.3| Mus musculus BAC clone RP23-110O3 from 7, complete sequence Length = 189634 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 aaaatccatctcttcccaca 99 |||||||||||||||||||| Sbjct: 111774 aaaatccatctcttcccaca 111793
>gb|AC123814.3| Mus musculus BAC clone RP24-235M22 from 10, complete sequence Length = 159486 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 gataactctagaagacacaa 361 |||||||||||||||||||| Sbjct: 141881 gataactctagaagacacaa 141900
>gb|AC117635.6| Mus musculus chromosome 12, clone RP23-203G2, complete sequence Length = 270063 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 ttcttttcttttcctttcgt 63 |||||||||||||||||||| Sbjct: 174438 ttcttttcttttcctttcgt 174457
>gb|AC021657.19| Homo sapiens 3 BAC RP11-490B19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170046 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 ttcttttcttttcctttcgtcttc 67 |||||||||||||||||| ||||| Sbjct: 154987 ttcttttcttttcctttcctcttc 155010
>gb|AC021076.5| Homo sapiens chromosome 5 clone CTB-166J1, complete sequence Length = 92068 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 ttcttttcttttcctttcgtcttc 67 |||||||||||||||||| ||||| Sbjct: 27883 ttcttttcttttcctttcttcttc 27906
>gb|U60315.1|MCU60315 Molluscum contagiosum virus subtype 1, complete genome Length = 190289 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cgtggcgccgcccacgcctc 202 |||||||||||||||||||| Sbjct: 140852 cgtggcgccgcccacgcctc 140833
>gb|AC162308.2| Mus musculus BAC clone RP23-109E9 from chromosome 5, complete sequence Length = 218501 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 tccaagtacttccaaaaaga 381 |||||||||||||||||||| Sbjct: 54127 tccaagtacttccaaaaaga 54108
>dbj|AK035253.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530005P22 product:hypothetical P-loop containing nucleotide triphosphate hydrolases structure containing protein, full insert sequence Length = 3396 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 gtacttccaaaaagaggact 386 |||||||||||||||||||| Sbjct: 1112 gtacttccaaaaagaggact 1131
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 152 gccctagtcctagctccagctgccgcct 179 |||||||||||||| | ||||||||||| Sbjct: 12351648 gccctagtcctagccctagctgccgcct 12351621
>gb|AE014845.1| Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence Length = 250531 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 ttcttttcttttcctttcgtcttc 67 |||||||||||||||||| ||||| Sbjct: 50851 ttcttttcttttcctttcttcttc 50874
>emb|AL807383.28| Mouse DNA sequence from clone RP23-286N14 on chromosome 4, complete sequence Length = 210053 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ccccactaccccacccaccc 233 |||||||||||||||||||| Sbjct: 112117 ccccactaccccacccaccc 112136
>gb|AC158656.2| Mus musculus BAC RP23-408F4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 194657 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ttgagaaatttcctattctt 144 |||||||||||||||||||| Sbjct: 120860 ttgagaaatttcctattctt 120879
>gb|AY530952.1| Zea mays unknown (Z576C20.2), putative heme oxygenase 1 (Z576C20.3), anthocyanin biosynthesis regulatory protein Pl1_B73 (Z576C20.4), putative growth-regulating factor 1 (Z576C20.6), and putative aminoalcoholphosphotransferase (Z576C20.14) genes, complete cds; and putative receptor protein kinase (Z576C20.21) gene, partial cds Length = 155173 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 46 cttttcttttcctttcgtcttccc 69 |||||||||||||||| ||||||| Sbjct: 144194 cttttcttttcctttcttcttccc 144171
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 152 gccctagtcctagctccagctgccgcct 179 |||||||||||||| | ||||||||||| Sbjct: 12430955 gccctagtcctagccctagctgccgcct 12430928
>emb|CT030658.5| Mouse DNA sequence from clone RP23-238H20 on chromosome 12, complete sequence Length = 157501 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 ttcttttcttttcctttcgt 63 |||||||||||||||||||| Sbjct: 125662 ttcttttcttttcctttcgt 125643
>gb|L11707.1|HEVSODMN Hevea brasiliensis Mn-superoxide dismutase (SODMn) gene, complete cds Length = 4968 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 gatgatggaaagaggaaacg 418 |||||||||||||||||||| Sbjct: 1743 gatgatggaaagaggaaacg 1724 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,301,676 Number of Sequences: 3902068 Number of extensions: 4301676 Number of successful extensions: 188785 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 188346 Number of HSP's gapped (non-prelim): 439 length of query: 455 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 433 effective length of database: 17,147,199,772 effective search space: 7424737501276 effective search space used: 7424737501276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)