>GIGAN_ARATH (Q9SQI2) GIGANTEA protein|
          Length = 1173

 Score = 25.4 bits (54), Expect(2) = 0.81
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 365 NSATCTGWIWPESPALSVCFDVEILARREEEVHGAG 258
           +S TC  W    + A + CFD  + +    E++  G
Sbjct: 813 DSVTCLNWKQENTCASTTCFDTAVTSASRTEMNPRG 848



 Score = 25.0 bits (53), Expect(2) = 0.81
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 277 RRSMGPGCQWRGGRRGRIHRAKGSGREQEEGVK 179
           R  M P    RG  +   H  +GSGR  E+G+K
Sbjct: 841 RTEMNP----RGNHKYARHSDEGSGRPSEKGIK 869

>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein
           F41)
          Length = 486

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = +1

Query: 250 TGTPAPWTSSSLLARISTSKQTDRAGDSGQIQPVHVAEFPQVVRNAQANLLQKNFAGKSM 429
           +GT A  TSSS L+ +++S  +  +  S  + P+      Q +  A A L   + AG + 
Sbjct: 279 SGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAA 338

Query: 430 LVGGI 444
           L GG+
Sbjct: 339 LNGGL 343

>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding
           protein) (EDEN-BP)
          Length = 486

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = +1

Query: 250 TGTPAPWTSSSLLARISTSKQTDRAGDSGQIQPVHVAEFPQVVRNAQANLLQKNFAGKSM 429
           +GT A  TSSS L+ +++S  +  +  S  + P+      Q +  A A L   + AG + 
Sbjct: 279 SGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAGLNVGSLAGMAA 338

Query: 430 LVGGI 444
           L GG+
Sbjct: 339 LNGGL 343

>GYRB_ACIBA (Q43907) DNA gyrase subunit B (EC 5.99.1.3) (Fragment)|
          Length = 388

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 338 WPESPALS-VCFDVEILARREEEVH--GAGVPVAGRSERAN 225
           WP +   S   F+VEILARR  E+    AGV +  R ER N
Sbjct: 65  WPSAETFSQTIFNVEILARRLRELSFLNAGVRIVLRDERIN 105

>TDRD3_HUMAN (Q9H7E2) Tudor domain-containing protein 3|
          Length = 651

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = -3

Query: 391 LVHSSQLG---ETLLRALVGSGQNRQPCLSALMSKSWQGGRRRSMGPGCQWRGGRRGRI 224
           L H +++G   E   +AL+ +G N +  L+ L++ + Q   +  MGP  + RG  RGRI
Sbjct: 199 LKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQ---KPVMGPPLRGRGKGRGRI 254

>GYRB_ACIG3 (Q44270) DNA gyrase subunit B (EC 5.99.1.3) (Fragment)|
          Length = 388

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -2

Query: 365 NSATCTGWIWPESPALS-VCFDVEILARREEEVH--GAGVPVAGRSERAN 225
           +S+  T   WP     S   F+VEILARR  E+    AGV +  R ER N
Sbjct: 56  DSSGTTVRFWPSELTFSQTIFNVEILARRLRELSFLNAGVRIVLRDERIN 105

>TDXH2_PICTO (Q6L140) Probable peroxiredoxin 2 (EC 1.11.1.15)|
          Length = 201

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 216 ARWIRPLRPPRHWHPGPMDLLLPPCQDFD-IKADRQGWRFW 335
           A W R +  P +W PG   +L PP    D ++  R+G + W
Sbjct: 156 ANWSRKIATPVNWRPGDKGILPPPSTLEDALQRIREGNKTW 196

>AMO_ECOLI (P46883) Copper amine oxidase precursor (EC 1.4.3.6) (Tyramine|
           oxidase) (2-phenylethylamine oxidase)
          Length = 757

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 264 PMDLLLPPCQDFDIKADRQGWRFWPDPTSARSRVSPSCEECT 389
           PM ++ P  +++ I  D   WR W    S  SRV P     T
Sbjct: 335 PMQIIEPEGKNYTITGDMIHWRNWDFHLSMNSRVGPMISTVT 376

>TRUB_THEFY (Q47RU8) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 293

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 259 PAPWTSSSLLARISTSKQTDRAGDSGQIQPV 351
           PA WTS  ++AR+     T R G +G + P+
Sbjct: 11  PAGWTSHDVVARVRRLAGTRRVGHAGTLDPM 41

>SPR2G_MOUSE (O70558) Small proline-rich protein 2G|
          Length = 76

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +3

Query: 186 PSSCSRPLPFARWIRPLRPPRHWHPGPMDLLLPPCQ 293
           P  C  P P  +   P  PP+   P P   L  PCQ
Sbjct: 20  PPKCPEPCPLPKCPEPCPPPKCPEPCPEPCLPSPCQ 55

>MYCS_RAT (P23999) Protein S-myc|
          Length = 429

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 204 PLPFARWIRPLRPPRHWHP-GPMDLLLPP 287
           PLP+A   RPL+ PR   P GP+  +L P
Sbjct: 301 PLPYAEDARPLKKPRSQDPLGPLKCVLRP 329

>ROBO1_HUMAN (Q9Y6N7) Roundabout homolog 1 precursor (H-Robo-1) (Deleted in U|
            twenty twenty)
          Length = 1651

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +1

Query: 250  TGTPAPWTSSSLLARISTSKQTDRAGDSGQIQPVHVAEFPQVVRNAQANLLQKNFAGK 423
            +G P P+ ++ L+    ++   + +GDSG+     + +  Q V   Q N++++N   K
Sbjct: 1067 SGQPTPYATTQLIQSNLSNNMNNGSGDSGEKHWKPLGQQKQEVAPVQYNIVEQNKLNK 1124

>GYRB_ACICA (Q43947) DNA gyrase subunit B (EC 5.99.1.3) (Fragment)|
          Length = 388

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -2

Query: 338 WP-ESPALSVCFDVEILARREEEVH--GAGVPVAGRSERAN 225
           WP E       F+VEILARR  E+    AGV +  R ER N
Sbjct: 65  WPSELTFTQTIFNVEILARRLRELSFLNAGVRIVLRDERIN 105

>YOR3_LORDV (P54636) Hypothetical 28.5 kDa protein in coat protein gene|
           3'region (ORF3)
          Length = 268

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 388 VHSSQLGETLLRALVGSGQNRQPCLSALMSKSWQGGRRRSMGP 260
           +HS+Q   T L +  GSG       SA  ++SW   + R++ P
Sbjct: 168 LHSNQTVSTRLGSSAGSGTGVSSLSSAARTRSWVEDQNRNLSP 210


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.132    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,407,899
Number of Sequences: 219361
Number of extensions: 1256211
Number of successful extensions: 4039
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4034
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)