>THIL_SYNP7 (Q54757) Thiamine-monophosphate kinase (EC 2.7.4.16)|
           (Thiamine-phosphate kinase)
          Length = 327

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 24/89 (26%), Positives = 36/89 (40%)
 Frame = -1

Query: 295 GRTPADRMPSRASLWHVRMTLSALRHCLPGCQDEDGEGDVDRRPTAIRTSAHSMSRAACD 116
           G T A  +PS   L  ++     L  CL         GD+ R PTA      +++  A  
Sbjct: 86  GITLALALPSDRRLSWLQQIYQGLDRCLKQYDCPLIGGDLSRSPTA------TLAVTALG 139

Query: 115 WRNQARRLRKQEGCTDQWMDATGRRSIGQ 29
           W N  R +R+       W+ ATG   + +
Sbjct: 140 WVNPNRVIRRSTAQVGDWIMATGTHGLSR 168

>GLIS1_MOUSE (Q8K1M4) Zinc finger protein GLIS1 (GLI-similar 1) (Gli homologous|
           protein 1) (GliH1)
          Length = 789

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 5   PSCHTSS*LTDRSPPRRIHPLIRAPLL-FPQPSRLVPPIA 121
           PSCH    L   +PP R HP +   LL FP P+R   P A
Sbjct: 109 PSCHQGLFLPAGTPPPRGHPPVCEKLLHFPHPNRSPRPQA 148

>SIX5_MOUSE (P70178) Homeobox protein SIX5 (DM locus-associated homeodomain|
           protein homolog)
          Length = 719

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -3

Query: 122 VRLEEPSEKAEETRGVHGSMDGCDGEEI 39
           VRL+E   +A ET+GVHG+     GEEI
Sbjct: 385 VRLDEAQSEAPETKGVHGT----TGEEI 408

>PRKDC_CANFA (Q8WN22) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1)|
            (DNA-PK catalytic subunit) (DNA-PKcs)
          Length = 4144

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +3

Query: 33   PIDLLPVASIH*SVHPSCFLSLLAWFLQSHAARLMECADVLIAVGRR 173
            P DLL  A +  S  P+ FL+L + F  SHA  LM  +  ++ +G R
Sbjct: 3895 PADLLKRAFLKMSTGPAAFLALRSHFASSHA--LMCISHWILGIGDR 3939

>SYP_MYCTU (O05814) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA|
           ligase) (ProRS)
          Length = 582

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 33  PIDLLPVASIH*SVHPSCFLSLLAWFLQSHAARLMECADVL 155
           PID LP A +H +       SL+AW  ++   R +  AD L
Sbjct: 247 PIDGLPEAVVHDTGDTPTIASLVAWANEADLGRTVTAADTL 287

>PRKDC_CHICK (Q8QGX4) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1)|
            (DNA-PK catalytic subunit) (DNA-PKcs)
          Length = 4134

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +3

Query: 33   PIDLLPVASIH*SVHPSCFLSLLAWFLQSHAARLMECADVLIAVGRR 173
            P DLL  A +  S  P  FL+L + F+ SHA  LM  +  ++ +G R
Sbjct: 3885 PEDLLRRAFVKMSTSPEAFLALRSHFVSSHA--LMCVSHWILGIGDR 3929

>METM_CAEEL (O17680) Probable S-adenosylmethionine synthetase C49F5.1 (EC|
           2.5.1.6) (Methionine adenosyltransferase) (AdoMet
           synthetase)
          Length = 403

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 158 DQDVGALHESCSVRLEEPSEKAEETRGVHGSMDGCDGEEIDRSIKNSY 15
           D  +G  H++C+V +    +  E   GVH + DG D    D+ I   Y
Sbjct: 81  DSSIGFDHKTCNVLVALEQQSPEIAAGVHVNKDGEDVGAGDQGIMFGY 128

>PRKDC_XENLA (Q9DEI1) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1)|
            (DNA-PK catalytic subunit) (DNA-PKcs)
          Length = 4146

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +3

Query: 33   PIDLLPVASIH*SVHPSCFLSLLAWFLQSHAARLMECADVLIAVGRR 173
            P DLL  A +  S  P  FLSL + F +SHA  L+  +  ++ +G R
Sbjct: 3897 PKDLLRRAFVKMSTTPEAFLSLRSHFARSHA--LLCVSHWIVGIGDR 3941


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,995,048
Number of Sequences: 219361
Number of extensions: 772843
Number of successful extensions: 2403
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2402
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)