ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl04d04 |
|---|---|
| Clone Library Name | barley_pub |
>SMG_DROME (Q23972) Protein Smaug| Length = 999 Score = 30.4 bits (67), Expect = 2.5 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +2 Query: 38 PNQN*EPPATLQEHHHPTSQQKILQK 115 P Q PP + + HHHP Q++LQ+ Sbjct: 870 PQQQPPPPPSSKSHHHPQQMQQMLQQ 895
>SYI_CHLCV (Q822L8) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1043 Score = 30.4 bits (67), Expect = 2.5 Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 14/72 (19%) Frame = +2 Query: 53 EPPATLQEHHHPTSQQKILQKSFLYEKEGEILVRFTP------------HHFP--CTGTE 190 EPP + EH KIL SF+ E EG +V P HH P C Sbjct: 290 EPPFSFFEHKRAEGAYKILSGSFVEESEGTGVVHMAPAFGEADFFVCKEHHVPIVCPVDN 349 Query: 191 ETVPAQFIPRFQ 226 + IP +Q Sbjct: 350 HGCFTEEIPEYQ 361
>PEPB_STRA5 (Q8E0C9) Group B oligopeptidase pepB (EC 3.4.24.-)| Length = 601 Score = 30.0 bits (66), Expect = 3.3 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = +2 Query: 77 HHHPTSQQKILQKSFLYEKEGEILVRFTPHHFP 175 HH+ +++Q L +F+ E+ E L++ HH P Sbjct: 247 HHYQSARQSALSANFIPEEVYETLIKTVNHHLP 279
>PEPB_STRA3 (Q53778) Group B oligopeptidase pepB (EC 3.4.24.-)| Length = 601 Score = 30.0 bits (66), Expect = 3.3 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = +2 Query: 77 HHHPTSQQKILQKSFLYEKEGEILVRFTPHHFP 175 HH+ +++Q L +F+ E+ E L++ HH P Sbjct: 247 HHYQSARQSALSANFIPEEVYETLIKTVNHHLP 279
>MURC_LACJO (P61680) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)| (UDP-N-acetylmuramoyl-L-alanine synthetase) Length = 437 Score = 29.6 bits (65), Expect = 4.3 Identities = 18/58 (31%), Positives = 28/58 (48%) Frame = +2 Query: 80 HHPTSQQKILQKSFLYEKEGEILVRFTPHHFPCTGTEETVPAQFIPRFQEILADPGKS 253 HHPT + +Q + + E++V F PH F T ++ F+EIL D K+ Sbjct: 321 HHPTEMRATIQAARQKFPDKELVVVFQPHTFSRT-------KKYQKDFEEILRDVDKA 371
>RNPH_RHIME (Q92SK2) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA| nucleotidyltransferase) Length = 239 Score = 29.3 bits (64), Expect = 5.6 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = +2 Query: 110 QKSFLYEKEGEILVRFTPHHFPCTGT-EETVPA 205 ++SF EG LVRF H CT + EE VPA Sbjct: 17 ERSFSKHAEGSCLVRFGDTHVLCTASLEEKVPA 49
>MNTH_MYCBO (O69443) Probable manganese transport protein mntH (BRAMP)| Length = 684 Score = 28.9 bits (63), Expect = 7.3 Identities = 15/25 (60%), Positives = 19/25 (76%) Frame = +2 Query: 311 LLLLVIQERQGNELFPWVIS*LLVV 385 LLLL IQ+R+G LF VI+ LL+V Sbjct: 410 LLLLTIQDRRGQRLFERVITALLLV 434
>TRPH_SALTY (O54453) Protein trpH| Length = 293 Score = 28.9 bits (63), Expect = 7.3 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Frame = -3 Query: 325 NEQQQLRELS*SKLCWRSGVGSSTRFAWIGEDFLEP--WNELGRNGFLSAGAWEMMWSKS 152 NE+ QL L+ W S +G DF +P W ELGR +L AG E +W Sbjct: 238 NERTQLATLARQHHLWAS----------LGSDFHQPCPWIELGRKLWLPAGV-EGVWQTW 286 Query: 151 DQ 146 +Q Sbjct: 287 EQ 288
>AREH_SCHPO (Q10269) Probable sterol O-acyltransferase (EC 2.3.1.26)| (Sterol-ester synthase) Length = 537 Score = 28.9 bits (63), Expect = 7.3 Identities = 18/59 (30%), Positives = 22/59 (37%) Frame = +1 Query: 10 TLRWTTAPLPQPKLRTPCNSARTPPSHLPAKNTPEIFFVRKRRGNIGQIYSTSFPMHRH 186 T R P P + T N PS K PE V K +G+ FP+ RH Sbjct: 4 TPRILITPSPLSDISTTINKPNVHPSMSLLKALPECRLVVKSKGDKNNANVVEFPLDRH 62
>MNTH_MYCTU (O05916) Probable manganese transport protein mntH| Length = 428 Score = 28.9 bits (63), Expect = 7.3 Identities = 15/25 (60%), Positives = 19/25 (76%) Frame = +2 Query: 311 LLLLVIQERQGNELFPWVIS*LLVV 385 LLLL IQ+R+G LF VI+ LL+V Sbjct: 154 LLLLTIQDRRGQRLFERVITALLLV 178
>Y403_RALSO (Q8Y2D3) UPF0042 protein RSc0403| Length = 296 Score = 28.9 bits (63), Expect = 7.3 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Frame = +2 Query: 191 ETVPAQFIPRFQEILADPGKSC*ATHTGAPTKFAS*Q----LPELLLLVIQERQGNELF 355 + +PAQFIP LAD G TH G T S + +PE + + +E LF Sbjct: 30 DNLPAQFIPELARYLADQG----YTHLGVATDIRSRESLRKVPETITQLRKEHDVRMLF 84
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 28.5 bits (62), Expect = 9.6 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%) Frame = +1 Query: 37 PQPKLRTPCNSARTPPSHLPAKNTPEIFFVRKRRGNIGQI--YSTSFPMHRH*GNRSGPV 210 P P+ RTP PP H +++ VR+RR + + S+S R P Sbjct: 317 PSPRRRTPPRRMPPPPRHRRSRSP-----VRRRRRSSASLSGSSSSSSSSRSRSPPKKPP 371 Query: 211 HSTVPGNPRRSRQI 252 TV PR++R++ Sbjct: 372 KRTVSSPPRKTRRL 385
>GAG_SMRVH (P21411) Gag polyprotein [Contains: Core protein p19; Core protein| p16; Probable core protein p35; Probable core protein p10] Length = 739 Score = 28.5 bits (62), Expect = 9.6 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +1 Query: 28 APLPQPKLRTPCNSARTPPSHLP 96 A L P +++P + A TPP HLP Sbjct: 166 ATLTDPPIQSPHSRAHTPPQHLP 188 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,493,558 Number of Sequences: 219361 Number of extensions: 1677477 Number of successful extensions: 5450 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 5174 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5448 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
