>gb|DQ201150.1| Hordeum vulgare subsp. vulgare cultivar Morex cryptochrome 1a
           (Cry1a) gene, complete cds
          Length = 3808

 Score =  807 bits (407), Expect = 0.0
 Identities = 407/407 (100%)
 Strand = Plus / Plus

                                                                       
Query: 74  gaacaccaccatcccacctcccagcaaaaaatactccagaaatcttttttgtacgaaaaa 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaacaccaccatcccacctcccagcaaaaaatactccagaaatcttttttgtacgaaaaa 60

                                                                       
Query: 134 gaaggggaaatattggtcagatttactccacatcatttcccatgcaccggcactgaggaa 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaaggggaaatattggtcagatttactccacatcatttcccatgcaccggcactgaggaa 120

                                                                       
Query: 194 accgttccggcccagttcattccacggttccaggaaatcctcgccgatccaggcaaatct 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 accgttccggcccagttcattccacggttccaggaaatcctcgccgatccaggcaaatct 180

                                                                       
Query: 254 tgttgagctacccacaccggagcgccaacaaagtttgcttcatgacagctccctgagctg 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgttgagctacccacaccggagcgccaacaaagtttgcttcatgacagctccctgagctg 240

                                                                       
Query: 314 ctgctgctcgttatccaagagaggcaaggcaacgagctttttccttgggtaattagctag 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctgctgctcgttatccaagagaggcaaggcaacgagctttttccttgggtaattagctag 300

                                                                       
Query: 374 ctgctcgtcgttgcagaaaggccttagtgccgagtcatgtcagcgtcgctgtcgatgagc 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctgctcgtcgttgcagaaaggccttagtgccgagtcatgtcagcgtcgctgtcgatgagc 360

                                                          
Query: 434 ggcggagccggggaggctgcgacgcggacggttgtgtggttcaggcg 480
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggcggagccggggaggctgcgacgcggacggttgtgtggttcaggcg 407

>gb|DQ201149.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo cryptochrome 1a
           (Cry1a) gene, complete cds
          Length = 3808

 Score =  807 bits (407), Expect = 0.0
 Identities = 407/407 (100%)
 Strand = Plus / Plus

                                                                       
Query: 74  gaacaccaccatcccacctcccagcaaaaaatactccagaaatcttttttgtacgaaaaa 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaacaccaccatcccacctcccagcaaaaaatactccagaaatcttttttgtacgaaaaa 60

                                                                       
Query: 134 gaaggggaaatattggtcagatttactccacatcatttcccatgcaccggcactgaggaa 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaaggggaaatattggtcagatttactccacatcatttcccatgcaccggcactgaggaa 120

                                                                       
Query: 194 accgttccggcccagttcattccacggttccaggaaatcctcgccgatccaggcaaatct 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 accgttccggcccagttcattccacggttccaggaaatcctcgccgatccaggcaaatct 180

                                                                       
Query: 254 tgttgagctacccacaccggagcgccaacaaagtttgcttcatgacagctccctgagctg 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgttgagctacccacaccggagcgccaacaaagtttgcttcatgacagctccctgagctg 240

                                                                       
Query: 314 ctgctgctcgttatccaagagaggcaaggcaacgagctttttccttgggtaattagctag 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctgctgctcgttatccaagagaggcaaggcaacgagctttttccttgggtaattagctag 300

                                                                       
Query: 374 ctgctcgtcgttgcagaaaggccttagtgccgagtcatgtcagcgtcgctgtcgatgagc 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctgctcgtcgttgcagaaaggccttagtgccgagtcatgtcagcgtcgctgtcgatgagc 360

                                                          
Query: 434 ggcggagccggggaggctgcgacgcggacggttgtgtggttcaggcg 480
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggcggagccggggaggctgcgacgcggacggttgtgtggttcaggcg 407

>gb|DQ201151.1| Hordeum vulgare subsp. vulgare cultivar Kompolti korai cryptochrome
           1a (Cry1a) gene, complete cds
          Length = 3808

 Score =  799 bits (403), Expect = 0.0
 Identities = 406/407 (99%)
 Strand = Plus / Plus

                                                                       
Query: 74  gaacaccaccatcccacctcccagcaaaaaatactccagaaatcttttttgtacgaaaaa 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaacaccaccatcccacctcccagcaaaaaatactccagaaatcttttttgtacgaaaaa 60

                                                                       
Query: 134 gaaggggaaatattggtcagatttactccacatcatttcccatgcaccggcactgaggaa 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaaggggaaatattggtcagatttactccacatcatttcccatgcaccggcactgaggaa 120

                                                                       
Query: 194 accgttccggcccagttcattccacggttccaggaaatcctcgccgatccaggcaaatct 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 accgttccggcccagttcattccacggttccaggaaatcctcgccgatccaggcaaatct 180

                                                                       
Query: 254 tgttgagctacccacaccggagcgccaacaaagtttgcttcatgacagctccctgagctg 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgttgagctacccacaccggagcgccaacaaagtttgcttcatgacagctccctgagctg 240

                                                                       
Query: 314 ctgctgctcgttatccaagagaggcaaggcaacgagctttttccttgggtaattagctag 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctgctgctcgttatccaagagaggcaaggcaacgagctttttccttgggtaattagctag 300

                                                                       
Query: 374 ctgctcgtcgttgcagaaaggccttagtgccgagtcatgtcagcgtcgctgtcgatgagc 433
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctgctcgtcgtcgcagaaaggccttagtgccgagtcatgtcagcgtcgctgtcgatgagc 360

                                                          
Query: 434 ggcggagccggggaggctgcgacgcggacggttgtgtggttcaggcg 480
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggcggagccggggaggctgcgacgcggacggttgtgtggttcaggcg 407

>gb|BC081030.1| Xenopus laevis MGC81689 protein, mRNA (cDNA clone MGC:81689
            IMAGE:6864769), complete cds
          Length = 3197

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 135  aaggggaaatattggtcagat 155
            |||||||||||||||||||||
Sbjct: 2058 aaggggaaatattggtcagat 2078

>emb|CT025605.11| Mouse DNA sequence from clone RP23-259D11 on chromosome 13, complete
              sequence
          Length = 188616

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 283    aaagtttgcttcatgacagct 303
              |||||||||||||||||||||
Sbjct: 156732 aaagtttgcttcatgacagct 156712

>gb|AC161585.2| Mus musculus BAC clone RP24-506J9 from chromosome 13, complete sequence
          Length = 211181

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 283    aaagtttgcttcatgacagct 303
              |||||||||||||||||||||
Sbjct: 112823 aaagtttgcttcatgacagct 112803

>emb|BX005232.7| Zebrafish DNA sequence from clone CH211-172G24, complete sequence
          Length = 138158

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 103   aatactccagaaatctttttt 123
             |||||||||||||||||||||
Sbjct: 45310 aatactccagaaatctttttt 45330

>ref|XM_466372.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2832

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 457 gcggacggttgtgtggttcaggcg 480
           ||||||||| ||||||||||||||
Sbjct: 442 gcggacggtggtgtggttcaggcg 465

>ref|XM_983845.1| PREDICTED: Mus musculus hypothetical LOC626575 (LOC626575), mRNA
          Length = 3101

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 gagcggcggagccggggagg 449
           ||||||||||||||||||||
Sbjct: 708 gagcggcggagccggggagg 689

>ref|XM_899431.2| PREDICTED: Mus musculus hypothetical LOC626575 (LOC626575), mRNA
          Length = 3101

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 gagcggcggagccggggagg 449
           ||||||||||||||||||||
Sbjct: 708 gagcggcggagccggggagg 689

>ref|XM_992478.1| PREDICTED: Mus musculus hypothetical protein LOC676728 (LOC676728),
           mRNA
          Length = 3098

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 gagcggcggagccggggagg 449
           ||||||||||||||||||||
Sbjct: 709 gagcggcggagccggggagg 690

>gb|AC132367.3| Mus musculus BAC clone RP23-465K21 from chromosome 17, complete
             sequence
          Length = 192971

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 299   cagctccctgagctgctgctgctc 322
             |||||||||| |||||||||||||
Sbjct: 99662 cagctccctgtgctgctgctgctc 99685

>gb|AC098724.3| Mus musculus BAC clone RP23-3D14 from 4, complete sequence
          Length = 190437

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 430   gagcggcggagccggggagg 449
             ||||||||||||||||||||
Sbjct: 64857 gagcggcggagccggggagg 64838

>gb|AC093461.4| Homo sapiens BAC clone RP11-764P14 from 7, complete sequence
          Length = 37408

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   ctccacatcatttcccatgc 178
             ||||||||||||||||||||
Sbjct: 30246 ctccacatcatttcccatgc 30265

>emb|AL445237.16| Human DNA sequence from clone RP13-238F13 on chromosome 10 Contains the
             OAT gene for ornithine aminotransferase (gyrate atrophy),
             a homeobox protein pseudogene, the 5' end of the LHPP gene
             for phospholysine phosphohistidine inorganic pyrophosphate
             phosphatase, a RPS10 (40S ribosomal protein 10) pseudogene
             and four CpG islands, complete sequence
          Length = 182955

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 77    caccaccatcccacctcccagcaa 100
             ||||||||||||| ||||||||||
Sbjct: 37990 caccaccatcccagctcccagcaa 38013

>emb|AL390318.20| Human DNA sequence from clone RP11-142L16 on chromosome 10 Contains the
              5' end of the PIP5K2A gene for
              phosphatidylinositol-4-phosphate 5-kinase type II alpha and
              one CpG island, complete sequence
          Length = 164955

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 291    cttcatgacagctccctgag 310
              ||||||||||||||||||||
Sbjct: 156797 cttcatgacagctccctgag 156816

>emb|AL390957.14| Human DNA sequence from clone RP11-417A21 on chromosome 1 Contains a
             unprocessed pseudogene similar to regulator of G-protein
             signalling 18 (RGS18), complete sequence
          Length = 153856

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   atactccagaaatctttttt 123
             ||||||||||||||||||||
Sbjct: 45257 atactccagaaatctttttt 45276

>emb|AL133344.28| Human DNA sequence from clone RP5-1158H2 on chromosome Xp11.23-11.4
             Contains part of gene FLJ22843, a KIAA0218 pseudogene, and
             a ribonucleotide reductase M2 polypeptide (RRM2)
             pseudogene, complete sequence
          Length = 168544

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 313   gctgctgctcgttatccaagagag 336
             ||||||| ||||||||||||||||
Sbjct: 62754 gctgctgatcgttatccaagagag 62731

>emb|AL096799.6|HSJ764O22 Human DNA sequence from clone RP4-764O22 on chromosome 20 Contains the
             parts of two novel genes, complete sequence
          Length = 82812

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   aaaatactccagaaatcttt 120
             ||||||||||||||||||||
Sbjct: 54902 aaaatactccagaaatcttt 54883

>dbj|AK030136.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4932702H24 product:unclassifiable, full
           insert sequence
          Length = 3043

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 gagcggcggagccggggagg 449
           ||||||||||||||||||||
Sbjct: 650 gagcggcggagccggggagg 631

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 457      gcggacggttgtgtggttcaggcg 480
                ||||||||| ||||||||||||||
Sbjct: 21996377 gcggacggtggtgtggttcaggcg 21996400

>gb|AC159463.1| Pan troglodytes BAC clone CH251-413O15 from chromosome unknown, complete
              sequence
          Length = 151114

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 313    gctgctgctcgttatccaagagag 336
              ||||||| ||||||||||||||||
Sbjct: 128393 gctgctgatcgttatccaagagag 128370

>gb|AC063943.23| Homo sapiens 12 BAC RP11-18C24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 137242

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    ccacctcccagcaaaaaata 106
             ||||||||||||||||||||
Sbjct: 70886 ccacctcccagcaaaaaata 70867

>dbj|AP005699.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0046L23
          Length = 100041

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 457   gcggacggttgtgtggttcaggcg 480
             ||||||||| ||||||||||||||
Sbjct: 44999 gcggacggtggtgtggttcaggcg 45022

>dbj|AB103097.1| Synthetic construct DNA, promoter sequence, clone:PCF10
          Length = 1027

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 70  gcaagaacaccaccatccca 89
           ||||||||||||||||||||
Sbjct: 260 gcaagaacaccaccatccca 241

>emb|BX005171.9| Mouse DNA sequence from clone RP23-234H6 on chromosome X, complete
            sequence
          Length = 172077

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 299  cagctccctgagctgctgctgctc 322
            |||||||||||| |||||||||||
Sbjct: 2046 cagctccctgagatgctgctgctc 2069

>ref|NM_208437.1| Eremothecium gossypii ABR137Wp (ABR137W), mRNA
          Length = 2868

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  cccagttcattccacggttc 223
            ||||||||||||||||||||
Sbjct: 1973 cccagttcattccacggttc 1954

>dbj|AK064910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M07, full
           insert sequence
          Length = 2833

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 457 gcggacggttgtgtggttcaggcg 480
           ||||||||| ||||||||||||||
Sbjct: 442 gcggacggtggtgtggttcaggcg 465

>emb|Z33612.1|ZMPHMU2 Z.mays (W22) phosphoglycerate mutase gene exons 2-8
          Length = 3583

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 acaaagtttgcttcatgaca 300
           ||||||||||||||||||||
Sbjct: 540 acaaagtttgcttcatgaca 559

>gb|AC161010.3| Pan troglodytes BAC clone CH251-501B6 from chromosome unknown, complete
             sequence
          Length = 157204

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 313   gctgctgctcgttatccaagagag 336
             ||||||| ||||||||||||||||
Sbjct: 57514 gctgctgatcgttatccaagagag 57491

>dbj|AB073546.1| Oryza sativa (japonica cultivar-group) OsCRY1a mRNA for
           cryptochrome 1a, complete cds
          Length = 2587

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 457 gcggacggttgtgtggttcaggcg 480
           ||||||||| ||||||||||||||
Sbjct: 117 gcggacggtggtgtggttcaggcg 140

>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II,
              complete sequence
          Length = 867699

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 204    cccagttcattccacggttc 223
              ||||||||||||||||||||
Sbjct: 655091 cccagttcattccacggttc 655072

>emb|AL606915.12| Mouse DNA sequence from clone RP23-185C16 on chromosome 4, complete
              sequence
          Length = 182248

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 430    gagcggcggagccggggagg 449
              ||||||||||||||||||||
Sbjct: 180201 gagcggcggagccggggagg 180182

>emb|AL645793.14| Mouse DNA sequence from clone RP23-480H2 on chromosome 1, complete
            sequence
          Length = 93900

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 129  aaaaagaaggggaaatattg 148
            ||||||||||||||||||||
Sbjct: 2541 aaaaagaaggggaaatattg 2522

>dbj|AB024337.1| Oryza sativa (japonica cultivar-group) mRNA for blue-light
           photoreceptor, complete cds
          Length = 2797

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 457 gcggacggttgtgtggttcaggcg 480
           ||||||||| ||||||||||||||
Sbjct: 391 gcggacggtggtgtggttcaggcg 414


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,714,169
Number of Sequences: 3902068
Number of extensions: 4714169
Number of successful extensions: 91208
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91098
Number of HSP's gapped (non-prelim): 110
length of query: 480
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 458
effective length of database: 17,147,199,772
effective search space: 7853417495576
effective search space used: 7853417495576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)