ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl04c09 |
|---|---|
| Clone Library Name | barley_pub |
>AMOL2_HUMAN (Q9Y2J4) Angiomotin-like protein 2 (Leman coiled-coil protein)| (LCCP) Length = 779 Score = 31.6 bits (70), Expect = 1.3 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 8/139 (5%) Frame = +2 Query: 113 EQLSWSKQHRSCDSPPPLQPASARGNTQGIMSAENTINDVQAQENALPPGD----RMNAV 280 +Q + +S + PPP PA+ +S V AQ ++ G +M AV Sbjct: 258 QQQQYQYLQQSQEHPPPPHPAALGHGPLSSLSPPAVEGPVSAQASSATSGSAHLAQMEAV 317 Query: 281 GTNMESL----TRVELDLAFASEKLLNLEMLVMEIARRATDFEPLTLDSESVSSETAENA 448 L R++ +L ++EK +E L EI R + E LT + + A Sbjct: 318 LRENARLQRDNERLQRELESSAEKAGRIEKLESEIQRLSEAHESLT------RASSKREA 371 Query: 449 FELDTLYGILDAEVQELDD 505 E T+ +D+E++ L D Sbjct: 372 LE-KTMRNKMDSEMRRLQD 389
>FBX40_HUMAN (Q9UH90) F-box only protein 40 (Muscle disease-related protein)| Length = 709 Score = 30.4 bits (67), Expect = 3.0 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -2 Query: 497 TPGLLHREYHTRCPARRHSQQS 432 TPG LH E H+ C RRH++ S Sbjct: 451 TPGGLHVELHSECVTRRHNKSS 472
>SYS_PSESM (Q87ZS9) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 426 Score = 30.4 bits (67), Expect = 3.0 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +2 Query: 377 RRATDFEPLTLDSESVSSETAENAFELDTLYGILDAEVQELDDM 508 +R D PL D E + +E +E ELD + LDA V + ++ Sbjct: 63 QRGEDIAPLMADVERMGNELSEGKVELDAIQAELDALVLNIPNL 106
>Y1631_AQUAE (O67553) Hypothetical protein aq_1631| Length = 163 Score = 30.4 bits (67), Expect = 3.0 Identities = 22/58 (37%), Positives = 27/58 (46%) Frame = +2 Query: 254 PPGDRMNAVGTNMESLTRVELDLAFASEKLLNLEMLVMEIARRATDFEPLTLDSESVS 427 PP +GT E+L R+ DL S L LE E+ R E L L SES+S Sbjct: 31 PPKYSPEVIGTVSETLRRISADLKLVSLILGELE----EVQERDIKEEALILSSESLS 84
>PRPF3_HUMAN (O43395) U4/U6 small nuclear ribonucleoprotein Prp3| (Pre-mRNA-splicing factor 3) (U4/U6 snRNP 90 kDa protein) (hPrp3) Length = 683 Score = 30.0 bits (66), Expect = 3.9 Identities = 36/148 (24%), Positives = 55/148 (37%), Gaps = 12/148 (8%) Frame = +2 Query: 86 LRRRQEAAAEQLSWSKQHRSCDSPPPLQPASARGNTQGIMSAENTINDVQAQENALPPGD 265 +++ EAA Q+ K+ S SPP QP + + + NTI QA A D Sbjct: 142 IKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPERLPIGNTIQPSQA---ATFMND 198 Query: 266 RMNAVGTNMESLTRVELDLAFASEKLLNLEML------VMEIA------RRATDFEPLTL 409 + E R++ LA + N M+ M IA + T PL L Sbjct: 199 AIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGIAPPKVELKDQTKPTPLIL 258 Query: 410 DSESVSSETAENAFELDTLYGILDAEVQ 493 D + + + EL L A ++ Sbjct: 259 DEQGRTVDATGKEIELTHRMPTLKANIR 286
>CENPH_HUMAN (Q9H3R5) Centromere protein H (Kinetochore protein CENP-H)| Length = 247 Score = 30.0 bits (66), Expect = 3.9 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%) Frame = +2 Query: 80 VVLRRRQEAAAEQLSWSKQHRSCDSPPPLQPASARGNTQGIMSAENTINDVQ-AQENALP 256 ++LR R + + L + + + P Q + I EN I +V+ A E Sbjct: 42 LLLRLRAQTKQQLLEYKSMVDASEEKTPEQIMQEKQIEAKIEDLENEIEEVKVAFEIKKL 101 Query: 257 PGDRMN---AVGTNMESLTRVELDLAFASEKLLNLEMLVMEIARRATDFEPLTLD 412 DRM A+ N+E ++R L + LL L L+M+ + + D E LD Sbjct: 102 ALDRMRLSTALKKNLEKISRQSSVLMDNMKHLLELNKLIMKSQQESWDLEEKLLD 156
>SOS1_HUMAN (Q07889) Son of sevenless homolog 1 (SOS-1)| Length = 1333 Score = 29.6 bits (65), Expect = 5.0 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Frame = +2 Query: 89 RRRQEAAAEQLSWSK-QHRSCDSPP---PLQPASARGNTQGIMSAENTINDVQAQENALP 256 RRR E+A + S SK + DSPP P QP S + + +S +I+D LP Sbjct: 1156 RRRPESAPAESSPSKIMSKHLDSPPAIPPRQPTSKAYSPRYSISDRTSISDPPESPPLLP 1215 Query: 257 P 259 P Sbjct: 1216 P 1216
>PRPF3_MOUSE (Q922U1) U4/U6 small nuclear ribonucleoprotein Prp3| (Pre-mRNA-splicing factor 3) Length = 683 Score = 29.6 bits (65), Expect = 5.0 Identities = 36/148 (24%), Positives = 55/148 (37%), Gaps = 12/148 (8%) Frame = +2 Query: 86 LRRRQEAAAEQLSWSKQHRSCDSPPPLQPASARGNTQGIMSAENTINDVQAQENALPPGD 265 +++ EAA Q+ K+ S SPP QP + + + NTI QA A D Sbjct: 142 IKQMMEAATRQIEERKKQLSFISPPAPQPKTPSSSQPERLPIGNTIQPSQA---ATFMND 198 Query: 266 RMNAVGTNMESLTRVELDLAFASEKLLNLEML------VMEIA------RRATDFEPLTL 409 + E R++ LA + N M+ M IA + T PL L Sbjct: 199 AIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGIAPPKVELKDQTKPTPLIL 258 Query: 410 DSESVSSETAENAFELDTLYGILDAEVQ 493 D + + + EL L A ++ Sbjct: 259 DEQGRTVDATGKEVELTHRMPTLKANIR 286
>ATKB2_LISIN (Q926K7) Potassium-transporting ATPase B chain 2 (EC 3.6.3.12)| (Potassium-translocating ATPase B chain 2) (ATP phosphohydrolase [potassium-transporting] B chain 2) (Potassium-binding and translocating subunit B 2) Length = 686 Score = 29.6 bits (65), Expect = 5.0 Identities = 11/20 (55%), Positives = 17/20 (85%) Frame = -1 Query: 228 SFIVFSALIIPCVLPLAEAG 169 S ++F+A+IIPC++PLA G Sbjct: 619 SALIFNAIIIPCLIPLAMKG 638
>SOS1_MOUSE (Q62245) Son of sevenless homolog 1 (SOS-1) (mSOS-1)| Length = 1319 Score = 29.6 bits (65), Expect = 5.0 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Frame = +2 Query: 89 RRRQEAAAEQLSWSK-QHRSCDSPP---PLQPASARGNTQGIMSAENTINDVQAQENALP 256 RRR E+A + S SK + DSPP P QP S + + +S +I+D LP Sbjct: 1142 RRRPESAPAESSPSKIMSKHLDSPPAIPPRQPTSKAYSPRYSISDRTSISDPPESPPLLP 1201 Query: 257 P 259 P Sbjct: 1202 P 1202
>Y657_PASMU (Q9CMZ3) Hypothetical protein PM0657| Length = 360 Score = 29.3 bits (64), Expect = 6.6 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Frame = +3 Query: 159 LPFSRLQPEVTHKEL*VPRTL*MMFKPKKMPCLLEI-G*MQLEPT-WKVLQ 305 LP++ + E K L VP T +FK K CLL+I QL+ T W +L+ Sbjct: 126 LPYTDREGEQRFKILVVPNTFGSIFKEMKCACLLDIESEEQLDKTYWSLLE 176
>COAT_FMVD (P09519) Probable coat protein| Length = 489 Score = 28.9 bits (63), Expect = 8.6 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +2 Query: 347 NLEMLVMEIARRATDFEPLTLDSESVSSETAENAF 451 NLE+ MEI T E T DS+S SS+ + +F Sbjct: 455 NLEVFSMEIIEETTSEEESTTDSDSSSSDDEQLSF 489
>MASK_XENLA (Q9PTG8) CPEB-associated factor Maskin (Cytoplasmic polyadenylation| element-binding protein-associated factor Maskin) Length = 931 Score = 28.9 bits (63), Expect = 8.6 Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 9/138 (6%) Frame = +2 Query: 101 EAAAEQLSWSKQHRSCDSPPPLQPASARGNTQGIMSAENTINDVQAQENALPPGDRMNAV 280 EA+ + +S + + DSP +Q +S G G+ + + E+ + +NA Sbjct: 176 EASKQMVSLNLSAANLDSPVTVQFSSESGYI-GVSEKTALDDTLPLSESGIKDLQGLNAS 234 Query: 281 GTNMESLTRVELDLAFASEKLLNLEMLVMEIARRATDF--------EPLTLDSESVSSET 436 N+E ++ D+ +EK + + +D EP+TLD + SS Sbjct: 235 SNNIEEPVPLDKDICSNNEK--DDATMADSTCEGTSDAHTSSNNIEEPVTLDKDICSSNE 292 Query: 437 AEN-AFELDTLYGILDAE 487 +N A T G DA+ Sbjct: 293 KDNAAVAYSTCEGTSDAQ 310
>SYS_PSEAE (Q9I0M6) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 426 Score = 28.9 bits (63), Expect = 8.6 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +2 Query: 377 RRATDFEPLTLDSESVSSETAENAFELDTLYGILDA 484 +R D PL D + + SE E +LD + G LDA Sbjct: 63 QRGEDIAPLLADVDRMGSELEEGKRQLDAIQGELDA 98
>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)| Length = 1285 Score = 28.9 bits (63), Expect = 8.6 Identities = 23/102 (22%), Positives = 41/102 (40%) Frame = +2 Query: 152 SPPPLQPASARGNTQGIMSAENTINDVQAQENALPPGDRMNAVGTNMESLTRVELDLAFA 331 SP P PAS R T I + ++ + D R N+ + E++ E +F+ Sbjct: 697 SPTPASPASNRALTPSIEAKDSRLQD-----------QRQNSPAGSKENVKASETSPSFS 745 Query: 332 SEKLLNLEMLVMEIARRATDFEPLTLDSESVSSETAENAFEL 457 + +V E ++ D + D S T+E+ +L Sbjct: 746 KADNKGMSPVVSEHRKQIDDLKKFKNDFRLQPSSTSESMDQL 787
>RAD50_SCHPO (Q9UTJ8) DNA repair protein rad50 (EC 3.6.-.-)| Length = 1290 Score = 28.9 bits (63), Expect = 8.6 Identities = 18/64 (28%), Positives = 32/64 (50%) Frame = +2 Query: 278 VGTNMESLTRVELDLAFASEKLLNLEMLVMEIARRATDFEPLTLDSESVSSETAENAFEL 457 V +++E+LT+ +L+ A +E+L ++ T+ L D + + E EL Sbjct: 707 VYSHLETLTKTFKNLSEAKPIFDEIELLDKRLSETKTELSDLQGDLQGLDIRKDEIQSEL 766 Query: 458 DTLY 469 DTLY Sbjct: 767 DTLY 770
>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)| (Trinucleotide repeat-containing gene 13 protein) Length = 1312 Score = 28.9 bits (63), Expect = 8.6 Identities = 23/102 (22%), Positives = 41/102 (40%) Frame = +2 Query: 152 SPPPLQPASARGNTQGIMSAENTINDVQAQENALPPGDRMNAVGTNMESLTRVELDLAFA 331 SP P PAS R T + ++ + D R N+ N E++ E +F+ Sbjct: 727 SPTPASPASNRAVTPSSEAKDSRLQD-----------QRQNSPAGNKENIKPNETSPSFS 775 Query: 332 SEKLLNLEMLVMEIARRATDFEPLTLDSESVSSETAENAFEL 457 + + +V E ++ D + D S T+E+ +L Sbjct: 776 KAENKGISPVVSEHRKQIDDLKKFKNDFRLQPSSTSESMDQL 817
>LAMB1_HUMAN (P07942) Laminin beta-1 chain precursor (Laminin B1 chain)| Length = 1786 Score = 28.9 bits (63), Expect = 8.6 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 6/87 (6%) Frame = +2 Query: 206 SAENTINDVQAQENALPPGDRMNA---VGTNMESLTRVELDLAFASEKLLNLEMLVMEIA 376 S E N+V E P N + +ESL++VE+ L ++ + EML+ E Sbjct: 1520 SIEAVANEVLKMEMPSTPQQLQNLTEDIRERVESLSQVEVILQHSAADIARAEMLLEEAK 1579 Query: 377 R---RATDFEPLTLDSESVSSETAENA 448 R ATD + +T D + E AE A Sbjct: 1580 RASKSATDVK-VTADMVKEALEEAEKA 1605 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,221,973 Number of Sequences: 219361 Number of extensions: 1304285 Number of successful extensions: 3758 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3648 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3756 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3812186532 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
