ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl04c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DEGP7_ARATH (Q8RY22) Protease Do-like 7 (EC 3.4.21.-) 100 8e-22
2YNM3_YEAST (P53920) Hypothetical 110.9 kDa protein in SPC98-TOM7... 52 4e-07
3YIFC_SCHPO (Q9P7S1) Hypothetical protein C23G3.12c in chromosome I 52 6e-07
4DEGP_SALTY (P26982) Protease do precursor (EC 3.4.21.-) 28 5.2

>DEGP7_ARATH (Q8RY22) Protease Do-like 7 (EC 3.4.21.-)|
          Length = 1097

 Score =  100 bits (250), Expect = 8e-22
 Identities = 50/56 (89%), Positives = 52/56 (92%)
 Frame = +3

Query: 3   PAVAVLRTTAPRAFDTEVAGASYATGFVVDKARGIILTNRHVVKPGPVVSEAMFVN 170
           PAV VLRTTA RAFDTE AGASYATGF+VDK RGIILTNRHVVKPGPVV+EAMFVN
Sbjct: 51  PAVVVLRTTACRAFDTESAGASYATGFIVDKRRGIILTNRHVVKPGPVVAEAMFVN 106



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>YNM3_YEAST (P53920) Hypothetical 110.9 kDa protein in SPC98-TOM70 intergenic|
           region
          Length = 997

 Score = 52.0 bits (123), Expect = 4e-07
 Identities = 27/43 (62%), Positives = 29/43 (67%)
 Frame = +3

Query: 42  FDTEVAGASYATGFVVDKARGIILTNRHVVKPGPVVSEAMFVN 170
           FD + A  S ATGFVVD   GIILTNRHVV PGP V   +F N
Sbjct: 94  FDCDSALVSEATGFVVDAKLGIILTNRHVVGPGPFVGYVVFDN 136



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>YIFC_SCHPO (Q9P7S1) Hypothetical protein C23G3.12c in chromosome I|
          Length = 996

 Score = 51.6 bits (122), Expect = 6e-07
 Identities = 26/55 (47%), Positives = 34/55 (61%)
 Frame = +3

Query: 6   AVAVLRTTAPRAFDTEVAGASYATGFVVDKARGIILTNRHVVKPGPVVSEAMFVN 170
           +V  +R +   AFDT+ +G   A+ FVVD   G +LTNRHVV  GP V  A+F N
Sbjct: 62  SVVSIRFSQVAAFDTDESGTGEASAFVVDAKNGYMLTNRHVVCAGPFVGHAVFDN 116



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>DEGP_SALTY (P26982) Protease do precursor (EC 3.4.21.-)|
          Length = 475

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 75  TGFVVDKARGIILTNRHVVKPGPVV 149
           +G ++D A+G ++TN HVV    V+
Sbjct: 116 SGVIIDAAKGYVVTNNHVVDNASVI 140


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,933,367
Number of Sequences: 219361
Number of extensions: 99394
Number of successful extensions: 350
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 80,573,946
effective HSP length: 32
effective length of database: 73,554,394
effective search space used: 1765305456
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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