ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl04c03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102482.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094L12, full insert sequence Length = 2770 Score = 509 bits (257), Expect = e-141 Identities = 374/413 (90%) Strand = Plus / Plus Query: 76 atggccagcaagttcgggctcgccggcggaatcccggagcggcgggtgcggccgatctgg 135 ||||| |||||||||||||||||||| || ||||||||| |||||||||||||||||||| Sbjct: 132 atggcaagcaagttcgggctcgccgggggcatcccggagaggcgggtgcggccgatctgg 191 Query: 136 gacgccgtcgactcgcgacagtacaaggccgcgctcaagctctgcacctcgctcctcgcc 195 ||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| Sbjct: 192 gacgccgtcgactcgcgccagtacaaggctgcgctcaagctctgcaccgcgctcctcgcc 251 Query: 196 aagcaccccacctcaccctacgccctcgctctcaaggctcttactttggaaaggatggga 255 |||||||| ||||| || |||| |||||||||||||| ||||| |||||||||||||||| Sbjct: 252 aagcacccgacctccccttacgtcctcgctctcaagggtcttattttggaaaggatggga 311 Query: 256 aagcctgatgaagcactgactgtctgtttgaatgccaaggagctattgtactcgaataac 315 ||||||||||||||||| | ||| ||||||||||||||||||| ||||| || | ||| Sbjct: 312 aagcctgatgaagcactcagtgtgtgtttgaatgccaaggagcagttgtattctgacaac 371 Query: 316 attttccattttgacgatctcacccttagcacactacagatagtgtttcaaaggcttgag 375 || || |||||||| |||||||| |||||||| || |||||||| ||||||||||||||| Sbjct: 372 atctttcattttgatgatctcactcttagcaccctgcagatagtatttcaaaggcttgag 431 Query: 376 agattggacctcgcaacttcatgctatgagtatgcttgtacaaaataccctaataacttg 435 ||||||| || || ||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct: 432 cgattggatcttgctacttcatgctatgagtatgcttgtacaaagtaccccaataacttg 491 Query: 436 gaattaatgatggggctctttaattgctacgtcagagagtactcatatgtgaa 488 || ||||||||||| || ||||||||||| ||||||||||||||||||||||| Sbjct: 492 gagttaatgatgggcctttttaattgctatgtcagagagtactcatatgtgaa 544 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 42 aaaccctaaccctagatcgtgaggg 66 ||||||||||||||||||| ||||| Sbjct: 73 aaaccctaaccctagatcgcgaggg 97
>dbj|AK073748.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066L16, full insert sequence Length = 3317 Score = 509 bits (257), Expect = e-141 Identities = 374/413 (90%) Strand = Plus / Plus Query: 76 atggccagcaagttcgggctcgccggcggaatcccggagcggcgggtgcggccgatctgg 135 ||||| |||||||||||||||||||| || ||||||||| |||||||||||||||||||| Sbjct: 133 atggcaagcaagttcgggctcgccgggggcatcccggagaggcgggtgcggccgatctgg 192 Query: 136 gacgccgtcgactcgcgacagtacaaggccgcgctcaagctctgcacctcgctcctcgcc 195 ||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| Sbjct: 193 gacgccgtcgactcgcgccagtacaaggctgcgctcaagctctgcaccgcgctcctcgcc 252 Query: 196 aagcaccccacctcaccctacgccctcgctctcaaggctcttactttggaaaggatggga 255 |||||||| ||||| || |||| |||||||||||||| ||||| |||||||||||||||| Sbjct: 253 aagcacccgacctccccttacgtcctcgctctcaagggtcttattttggaaaggatggga 312 Query: 256 aagcctgatgaagcactgactgtctgtttgaatgccaaggagctattgtactcgaataac 315 ||||||||||||||||| | ||| ||||||||||||||||||| ||||| || | ||| Sbjct: 313 aagcctgatgaagcactcagtgtgtgtttgaatgccaaggagcagttgtattctgacaac 372 Query: 316 attttccattttgacgatctcacccttagcacactacagatagtgtttcaaaggcttgag 375 || || |||||||| |||||||| |||||||| || |||||||| ||||||||||||||| Sbjct: 373 atctttcattttgatgatctcactcttagcaccctgcagatagtatttcaaaggcttgag 432 Query: 376 agattggacctcgcaacttcatgctatgagtatgcttgtacaaaataccctaataacttg 435 ||||||| || || ||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct: 433 cgattggatcttgctacttcatgctatgagtatgcttgtacaaagtaccccaataacttg 492 Query: 436 gaattaatgatggggctctttaattgctacgtcagagagtactcatatgtgaa 488 || ||||||||||| || ||||||||||| ||||||||||||||||||||||| Sbjct: 493 gagttaatgatgggcctttttaattgctatgtcagagagtactcatatgtgaa 545 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 42 aaaccctaaccctagatcgtgaggg 66 ||||||||||||||||||| ||||| Sbjct: 74 aaaccctaaccctagatcgcgaggg 98
>gb|AC134927.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1036C05, complete sequence Length = 143400 Score = 206 bits (104), Expect = 5e-50 Identities = 137/148 (92%) Strand = Plus / Minus Query: 76 atggccagcaagttcgggctcgccggcggaatcccggagcggcgggtgcggccgatctgg 135 ||||| |||||||||||||||||||| || ||||||||| |||||||||||||||||||| Sbjct: 80568 atggcaagcaagttcgggctcgccgggggcatcccggagaggcgggtgcggccgatctgg 80509 Query: 136 gacgccgtcgactcgcgacagtacaaggccgcgctcaagctctgcacctcgctcctcgcc 195 ||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| Sbjct: 80508 gacgccgtcgactcgcgccagtacaaggctgcgctcaagctctgcaccgcgctcctcgcc 80449 Query: 196 aagcaccccacctcaccctacgccctcg 223 |||||||| ||||| || |||| ||||| Sbjct: 80448 aagcacccgacctccccttacgtcctcg 80421 Score = 161 bits (81), Expect = 3e-36 Identities = 135/153 (88%) Strand = Plus / Minus Query: 223 gctctcaaggctcttactttggaaaggatgggaaagcctgatgaagcactgactgtctgt 282 |||||||||| ||||| ||||||||||||||||||||||||||||||||| | ||| ||| Sbjct: 79077 gctctcaagggtcttattttggaaaggatgggaaagcctgatgaagcactcagtgtgtgt 79018 Query: 283 ttgaatgccaaggagctattgtactcgaataacattttccattttgacgatctcaccctt 342 |||||||||||||||| ||||| || | ||||| || |||||||| |||||||| ||| Sbjct: 79017 ttgaatgccaaggagcagttgtattctgacaacatctttcattttgatgatctcactctt 78958 Query: 343 agcacactacagatagtgtttcaaaggcttgag 375 ||||| || |||||||| ||||||||||||||| Sbjct: 78957 agcaccctgcagatagtatttcaaaggcttgag 78925 Score = 147 bits (74), Expect = 4e-32 Identities = 92/98 (93%) Strand = Plus / Minus Query: 391 acttcatgctatgagtatgcttgtacaaaataccctaataacttggaattaatgatgggg 450 ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| Sbjct: 78825 acttcatgctatgagtatgcttgtacaaagtaccccaataacttggagttaatgatgggc 78766 Query: 451 ctctttaattgctacgtcagagagtactcatatgtgaa 488 || ||||||||||| ||||||||||||||||||||||| Sbjct: 78765 ctttttaattgctatgtcagagagtactcatatgtgaa 78728 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 42 aaaccctaaccctagatcgtgaggg 66 ||||||||||||||||||| ||||| Sbjct: 80627 aaaccctaaccctagatcgcgaggg 80603
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 206 bits (104), Expect = 5e-50 Identities = 137/148 (92%) Strand = Plus / Minus Query: 76 atggccagcaagttcgggctcgccggcggaatcccggagcggcgggtgcggccgatctgg 135 ||||| |||||||||||||||||||| || ||||||||| |||||||||||||||||||| Sbjct: 16129398 atggcaagcaagttcgggctcgccgggggcatcccggagaggcgggtgcggccgatctgg 16129339 Query: 136 gacgccgtcgactcgcgacagtacaaggccgcgctcaagctctgcacctcgctcctcgcc 195 ||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| Sbjct: 16129338 gacgccgtcgactcgcgccagtacaaggctgcgctcaagctctgcaccgcgctcctcgcc 16129279 Query: 196 aagcaccccacctcaccctacgccctcg 223 |||||||| ||||| || |||| ||||| Sbjct: 16129278 aagcacccgacctccccttacgtcctcg 16129251 Score = 161 bits (81), Expect = 3e-36 Identities = 135/153 (88%) Strand = Plus / Minus Query: 223 gctctcaaggctcttactttggaaaggatgggaaagcctgatgaagcactgactgtctgt 282 |||||||||| ||||| ||||||||||||||||||||||||||||||||| | ||| ||| Sbjct: 16127907 gctctcaagggtcttattttggaaaggatgggaaagcctgatgaagcactcagtgtgtgt 16127848 Query: 283 ttgaatgccaaggagctattgtactcgaataacattttccattttgacgatctcaccctt 342 |||||||||||||||| ||||| || | ||||| || |||||||| |||||||| ||| Sbjct: 16127847 ttgaatgccaaggagcagttgtattctgacaacatctttcattttgatgatctcactctt 16127788 Query: 343 agcacactacagatagtgtttcaaaggcttgag 375 ||||| || |||||||| ||||||||||||||| Sbjct: 16127787 agcaccctgcagatagtatttcaaaggcttgag 16127755 Score = 147 bits (74), Expect = 4e-32 Identities = 92/98 (93%) Strand = Plus / Minus Query: 391 acttcatgctatgagtatgcttgtacaaaataccctaataacttggaattaatgatgggg 450 ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| Sbjct: 16127655 acttcatgctatgagtatgcttgtacaaagtaccccaataacttggagttaatgatgggc 16127596 Query: 451 ctctttaattgctacgtcagagagtactcatatgtgaa 488 || ||||||||||| ||||||||||||||||||||||| Sbjct: 16127595 ctttttaattgctatgtcagagagtactcatatgtgaa 16127558 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 caaaaccctaaccctagatcg 60 ||||||||||||||||||||| Sbjct: 19245924 caaaaccctaaccctagatcg 19245904 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 42 aaaccctaaccctagatcgtgaggg 66 ||||||||||||||||||| ||||| Sbjct: 16129457 aaaccctaaccctagatcgcgaggg 16129433 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 caaaaccctaaccctagatcg 60 ||||||||||||||||||||| Sbjct: 7877301 caaaaccctaaccctagatcg 7877321
>ref|NM_125231.4| Arabidopsis thaliana unknown protein AT5G58450 mRNA, complete cds Length = 3350 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 418 aaataccctaataacttggaattaatgatggggctctttaattgcta 464 |||||||||||||| ||||| | |||||||||||||| |||||||| Sbjct: 532 aaataccctaataatttggagcttatgatggggctcttcaattgcta 578
>gb|BT003846.1| Arabidopsis thaliana clone RAFL15-26-J16 (R20634) unknown protein (At5g58450) mRNA, partial cds Length = 3290 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 418 aaataccctaataacttggaattaatgatggggctctttaattgcta 464 |||||||||||||| ||||| | |||||||||||||| |||||||| Sbjct: 475 aaataccctaataatttggagcttatgatggggctcttcaattgcta 521
>dbj|AB025632.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQJ2 Length = 51440 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 418 aaataccctaataacttggaattaatgatggggctctttaattgcta 464 |||||||||||||| ||||| | |||||||||||||| |||||||| Sbjct: 13768 aaataccctaataatttggagcttatgatggggctcttcaattgcta 13814
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 40 caaaaccctaaccctagatcgtg 62 ||||||||||||||||||||||| Sbjct: 15354749 caaaaccctaaccctagatcgtg 15354771 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 ccgccgctcaaaaccctaacccta 55 ||||||| |||||||||||||||| Sbjct: 18923218 ccgccgcccaaaaccctaacccta 18923195
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 40 caaaaccctaaccctagatcgtg 62 ||||||||||||||||||||||| Sbjct: 15309032 caaaaccctaaccctagatcgtg 15309054 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 ccgccgctcaaaaccctaacccta 55 ||||||| |||||||||||||||| Sbjct: 18849445 ccgccgcccaaaaccctaacccta 18849422
>emb|AL713928.3|CNS07YP5 Oryza sativa chromosome 12, . BAC OSJNBa0036B12 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151541 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 40 caaaaccctaaccctagatcgtg 62 ||||||||||||||||||||||| Sbjct: 130142 caaaaccctaaccctagatcgtg 130164
>emb|AL513189.13| Human DNA sequence from clone RP11-339I11 on chromosome 1 Contains part of a novel gene, complete sequence Length = 59522 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 246 aaggatgggaaagcctgatgaa 267 |||||||||||||||||||||| Sbjct: 37768 aaggatgggaaagcctgatgaa 37747
>ref|XM_465482.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1050 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 caaaaccctaaccctagatcg 60 ||||||||||||||||||||| Sbjct: 1015 caaaaccctaaccctagatcg 1035
>gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01, complete sequence Length = 146303 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 caaaaccctaaccctagatcg 60 ||||||||||||||||||||| Sbjct: 49999 caaaaccctaaccctagatcg 49979
>gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0042F15, complete sequence Length = 162959 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 caaaaccctaaccctagatcg 60 ||||||||||||||||||||| Sbjct: 62076 caaaaccctaaccctagatcg 62096
>gb|AC167227.1| Oryza sativa (japonica cultivar-group) chromosome unknown clone OSJNBb0026K11, complete sequence Length = 129643 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 caaaaccctaaccctagatcg 60 ||||||||||||||||||||| Sbjct: 26104 caaaaccctaaccctagatcg 26084
>emb|AL358793.14| Human DNA sequence from clone RP11-19M4 on chromosome 1, complete sequence Length = 92434 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 227 tcaaggctcttactttggaaa 247 ||||||||||||||||||||| Sbjct: 8258 tcaaggctcttactttggaaa 8278
>emb|BX883046.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 5/11 Length = 349047 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 gccaagcaccccacctcaccc 213 ||||||||||||||||||||| Sbjct: 94280 gccaagcaccccacctcaccc 94300
>emb|AJ314857.1|RNO314857 Rattus norvegicus Nfkbil1 gene (partial), Atp6G, Bat1, RT1-C/E1, RT1-C/E2, RT1-C/E3, RT1-C/E4, RT1-C/E5, RT1-C/E7 genes and RT1-C/E6, RT1-C/E8, RT1-C/E9 pseudogenes Length = 198911 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 gccaagcaccccacctcaccc 213 ||||||||||||||||||||| Sbjct: 12096 gccaagcaccccacctcaccc 12116
>gb|AC159320.3| Mus musculus BAC clone RP23-51A12 from chromosome 14, complete sequence Length = 255936 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 357 agtgtttcaaaggcttgagag 377 ||||||||||||||||||||| Sbjct: 126706 agtgtttcaaaggcttgagag 126686
>gb|AC079038.3|AC079038 Oryza sativa chromosome 7 clone OSJNBb0024A20, complete sequence Length = 129838 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 caaaaccctaaccctagatcg 60 ||||||||||||||||||||| Sbjct: 35381 caaaaccctaaccctagatcg 35401
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 caaaaccctaaccctagatcg 60 ||||||||||||||||||||| Sbjct: 16064230 caaaaccctaaccctagatcg 16064210 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 caaaaccctaaccctagatc 59 |||||||||||||||||||| Sbjct: 2502327 caaaaccctaaccctagatc 2502346
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 caaaaccctaaccctagatcg 60 ||||||||||||||||||||| Sbjct: 25053772 caaaaccctaaccctagatcg 25053752
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 caaaaccctaaccctagatcg 60 ||||||||||||||||||||| Sbjct: 15499570 caaaaccctaaccctagatcg 15499550 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 caaaaccctaaccctagatc 59 |||||||||||||||||||| Sbjct: 10654513 caaaaccctaaccctagatc 10654494
>gb|AC126684.4| Mus musculus BAC clone RP23-68L2 from chromosome 14, complete sequence Length = 233755 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 agtgtttcaaaggcttgagag 377 ||||||||||||||||||||| Sbjct: 90986 agtgtttcaaaggcttgagag 91006
>dbj|AP005833.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1328_D07 Length = 155007 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 caaaaccctaaccctagatcg 60 ||||||||||||||||||||| Sbjct: 64443 caaaaccctaaccctagatcg 64423
>dbj|AP005895.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0018L13 Length = 131155 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 caaaaccctaaccctagatcg 60 ||||||||||||||||||||| Sbjct: 94452 caaaaccctaaccctagatcg 94432
>dbj|AP005068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0644G05 Length = 143119 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 caaaaccctaaccctagatcg 60 ||||||||||||||||||||| Sbjct: 27130 caaaaccctaaccctagatcg 27110
>emb|AL772283.4| Mouse DNA sequence from clone RP23-258N14 on chromosome X, complete sequence Length = 132296 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 428 ataacttggaattaatgatgg 448 ||||||||||||||||||||| Sbjct: 78424 ataacttggaattaatgatgg 78404
>ref|NM_125064.1| Arabidopsis thaliana unknown protein AT5G56810 mRNA, complete cds Length = 1308 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 ctcaaaaccctaaccctaga 57 |||||||||||||||||||| Sbjct: 262 ctcaaaaccctaaccctaga 281
>gb|AF443599.1| Zea mays enhancer of polycomb-like protein (epc101) mRNA, complete cds Length = 1897 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 gctcaaaaccctaaccctag 56 |||||||||||||||||||| Sbjct: 103 gctcaaaaccctaaccctag 122
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome Length = 1709204 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 aataacattttccattttga 329 |||||||||||||||||||| Sbjct: 1233245 aataacattttccattttga 1233264
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 atcccggagcggcgggtgcggccg 129 |||||||| ||||||||||||||| Sbjct: 207474 atcccggatcggcgggtgcggccg 207497
>gb|AC162459.2| Mus musculus chromosome 3, clone RP23-80A8, complete sequence Length = 207515 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 actgactgtctgtttgaatg 289 |||||||||||||||||||| Sbjct: 175682 actgactgtctgtttgaatg 175701
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 ggagcggcgggtgcggccga 130 |||||||||||||||||||| Sbjct: 233499 ggagcggcgggtgcggccga 233480
>gb|AC073392.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0072A12, complete sequence Length = 149347 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 caaaaccctaaccctagatc 59 |||||||||||||||||||| Sbjct: 56496 caaaaccctaaccctagatc 56515
>gb|AC078944.5|AC078944 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0089D15, from Chromosome 10, complete sequence Length = 164679 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 caaaaccctaaccctagatc 59 |||||||||||||||||||| Sbjct: 91555 caaaaccctaaccctagatc 91536
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 caaaaccctaaccctagatc 59 |||||||||||||||||||| Sbjct: 14584034 caaaaccctaaccctagatc 14584053 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 caaaaccctaaccctagatc 59 |||||||||||||||||||| Sbjct: 4094726 caaaaccctaaccctagatc 4094707
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 caaaaccctaaccctagatc 59 |||||||||||||||||||| Sbjct: 19902409 caaaaccctaaccctagatc 19902428 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 tcaaaaccctaaccctagat 58 |||||||||||||||||||| Sbjct: 7505120 tcaaaaccctaaccctagat 7505139
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 caaaaccctaaccctagatc 59 |||||||||||||||||||| Sbjct: 8363995 caaaaccctaaccctagatc 8363976
>dbj|AP004667.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0433E10 Length = 144643 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 caaaaccctaaccctagatc 59 |||||||||||||||||||| Sbjct: 70587 caaaaccctaaccctagatc 70606
>dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0406E03 Length = 201069 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 caaaaccctaaccctagatc 59 |||||||||||||||||||| Sbjct: 88917 caaaaccctaaccctagatc 88936
>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0603C10 Length = 187620 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 caaaaccctaaccctagatc 59 |||||||||||||||||||| Sbjct: 157500 caaaaccctaaccctagatc 157481
>dbj|AP003799.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1006_H01 Length = 113769 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 tcaaaaccctaaccctagat 58 |||||||||||||||||||| Sbjct: 32201 tcaaaaccctaaccctagat 32220
>dbj|AB117723.1| Rhodococcus rhodochrous orf51, bphC5, orf52, orf53, orf54, orf55, orf56 genes for hypothetical proteins and 2, 3-dihydroxybiphenyl 1, 2-dioxygenase, partial and complete cds Length = 5810 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 gctcgccggcggaatcccgg 112 |||||||||||||||||||| Sbjct: 3044 gctcgccggcggaatcccgg 3063
>dbj|AP005533.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0018M09 Length = 157377 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 caaaaccctaaccctagatc 59 |||||||||||||||||||| Sbjct: 72203 caaaaccctaaccctagatc 72184
>dbj|AB013392.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19 Length = 84129 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 ctcaaaaccctaaccctaga 57 |||||||||||||||||||| Sbjct: 72986 ctcaaaaccctaaccctaga 73005
>dbj|AK071243.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087F24, full insert sequence Length = 1121 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 ccgccgctcaaaaccctaacccta 55 ||||||| |||||||||||||||| Sbjct: 27 ccgccgcccaaaaccctaacccta 50
>dbj|AK068908.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003C02, full insert sequence Length = 1373 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 ccgccgctcaaaaccctaacccta 55 ||||||| |||||||||||||||| Sbjct: 57 ccgccgcccaaaaccctaacccta 80
>gb|AC102012.7| Mus musculus chromosome 3, clone RP24-542B2, complete sequence Length = 155366 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 actgactgtctgtttgaatg 289 |||||||||||||||||||| Sbjct: 76672 actgactgtctgtttgaatg 76691
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 gtacaaggccgcgctcaagc 175 |||||||||||||||||||| Sbjct: 2940294 gtacaaggccgcgctcaagc 2940275
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 caaaaccctaaccctagatc 59 |||||||||||||||||||| Sbjct: 14592275 caaaaccctaaccctagatc 14592294 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 caaaaccctaaccctagatc 59 |||||||||||||||||||| Sbjct: 4095547 caaaaccctaaccctagatc 4095528
>emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153064 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 ccgccgctcaaaaccctaacccta 55 ||||||| |||||||||||||||| Sbjct: 47161 ccgccgcccaaaaccctaacccta 47184
>emb|BX255875.3|CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151203 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 ccgccgctcaaaaccctaacccta 55 ||||||| |||||||||||||||| Sbjct: 19335 ccgccgcccaaaaccctaacccta 19312
>emb|AL157756.3|CNS01RG4 Human chromosome 14 DNA sequence BAC C-2184C24 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 127544 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 gggaaagcctgatgaagcac 271 |||||||||||||||||||| Sbjct: 10823 gggaaagcctgatgaagcac 10842
>emb|AL604025.15| Mouse DNA sequence from clone RP23-455K6 on chromosome 11, complete sequence Length = 151207 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 gtttcaaaggcttgagagat 379 |||||||||||||||||||| Sbjct: 129581 gtttcaaaggcttgagagat 129600 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,862,309 Number of Sequences: 3902068 Number of extensions: 3862309 Number of successful extensions: 71930 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71020 Number of HSP's gapped (non-prelim): 910 length of query: 494 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 472 effective length of database: 17,147,199,772 effective search space: 8093478292384 effective search space used: 8093478292384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
