ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl04c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_482758.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
2gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
3ref|XM_365394.1| Magnaporthe grisea 70-15 hypothetical protein (... 42 1.4
4ref|XM_958778.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.4
5ref|XM_330498.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.4
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
7dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
8gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 5.7
9gb|AF160191.1| Aplysia californica MIP-related peptide precursor... 40 5.7
10gb|AC093560.2| Homo sapiens chromosome 1 clone RP11-398H19, comp... 40 5.7
11dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.7
12gb|M80674.1|STMTCREP Streptomyces glaucescens tcm operon 40 5.7

>ref|XM_482758.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 411

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 29  cgcgcagcacggcagcagcag 49
           |||||||||||||||||||||
Sbjct: 115 cgcgcagcacggcagcagcag 95



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>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0022E16
              map C481S, complete sequence
          Length = 179668

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 162    ccaccccccacgcgccgcccgcccg 186
              ||||||||| |||||||||||||||
Sbjct: 146393 ccaccccccgcgcgccgcccgcccg 146417



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>ref|XM_365394.1| Magnaporthe grisea 70-15 hypothetical protein (MG02096.4) partial
            mRNA
          Length = 2478

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 22   tcttcctcgcgcagcacggcagcag 46
            |||||||||| ||||||||||||||
Sbjct: 2093 tcttcctcgcccagcacggcagcag 2117



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>ref|XM_958778.1| Neurospora crassa OR74A hypothetical protein (NCU03063.1) partial
            mRNA
          Length = 2109

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 1    ccccctccttctactcccctgtcttcctc 29
            |||||||||||| |||||||| |||||||
Sbjct: 2056 ccccctccttcttctcccctgccttcctc 2028



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>ref|XM_330498.1| Neurospora crassa OR74A hypothetical protein (NCU03063.1) partial
            mRNA
          Length = 2109

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 1    ccccctccttctactcccctgtcttcctc 29
            |||||||||||| |||||||| |||||||
Sbjct: 2056 ccccctccttcttctcccctgccttcctc 2028



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 29       cgcgcagcacggcagcagcag 49
                |||||||||||||||||||||
Sbjct: 22368574 cgcgcagcacggcagcagcag 22368554



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>dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1144B06
          Length = 133689

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 29    cgcgcagcacggcagcagcag 49
             |||||||||||||||||||||
Sbjct: 65557 cgcgcagcacggcagcagcag 65537



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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 291    actcgcctccggctgcgagc 310
              ||||||||||||||||||||
Sbjct: 234545 actcgcctccggctgcgagc 234526



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>gb|AF160191.1| Aplysia californica MIP-related peptide precursor (MRP) mRNA,
           complete cds
          Length = 3263

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 32  gcagcacggcagcagcagga 51
           ||||||||||||||||||||
Sbjct: 602 gcagcacggcagcagcagga 621



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>gb|AC093560.2| Homo sapiens chromosome 1 clone RP11-398H19, complete sequence
          Length = 199594

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    ccccacgcgccgcccgcccg 186
              ||||||||||||||||||||
Sbjct: 123041 ccccacgcgccgcccgcccg 123022



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 170     cacgcgccgcccgcccgagg 189
               ||||||||||||||||||||
Sbjct: 8038562 cacgcgccgcccgcccgagg 8038543



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>gb|M80674.1|STMTCREP Streptomyces glaucescens tcm operon
          Length = 13123

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 338   gaccccctgccgcgcgcgga 357
             ||||||||||||||||||||
Sbjct: 11882 gaccccctgccgcgcgcgga 11901


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,985,013
Number of Sequences: 3902068
Number of extensions: 1985013
Number of successful extensions: 35372
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35237
Number of HSP's gapped (non-prelim): 135
length of query: 424
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 402
effective length of database: 17,147,199,772
effective search space: 6893174308344
effective search space used: 6893174308344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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