Clone Name | bastl04b12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK109713.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-H04, full insert sequence Length = 1522 Score = 206 bits (104), Expect = 5e-50 Identities = 299/364 (82%) Strand = Plus / Plus Query: 111 ggcggcgcggtacccggcgctcgtaccccgcggaggcgccggttctttcaccggcaccgt 170 |||||||||| ||||||||||||| ||||| || |||| || | ||| |||| ||||| Sbjct: 218 ggcggcgcggcacccggcgctcgtgccccgtggcggcgaggggtgcttctccgggaccgt 277 Query: 171 cctcgatgtggtctccaggggcgggatccgcggtggcgaggggaggctctggctctccgt 230 | || |||| | |||||||| ||| |||||| || |||| ||||||||||||||||| Sbjct: 278 cgcggaagtggcccccaggggcaggagccgcggcggggaggcgaggctctggctctccga 337 Query: 231 ggacgccatggccagcgccgggctgcggcatgggtgcctcgtctctgtgtcactcgtttc 290 | |||||||| | |||||| |||||||| ||||||||||||||| || || ||| |||| Sbjct: 338 gcccgccatggtcggcgccgcgctgcggcctgggtgcctcgtctccgtatctctcatttc 397 Query: 291 ttcaagtagtaacagtttagatggcttcccacttgatagcttatttgaggagtgcgccag 350 ||||| ||| | | |||||| | ||||||||||| ||||||||||||||| | Sbjct: 398 ttcaaataggggtcgatcagatggttcaccacttgatagtttatttgaggagtgcaacga 457 Query: 351 attctttgatcttgatgtggacaatgatctcatctctaatgaagctggagtgaactttgt 410 |||||||||||||||||||| ||||||||||| ||||||||||||| |||||||| Sbjct: 458 gttctttgatcttgatgtggataatgatctcatgcctaatgaagctggtcgaaactttgt 517 Query: 411 gactgccaaagtttccccttcatgtgaggttcaaaagaatgacatcaagctctcttggga 470 || ||||||||||| ||| ||| ||||||| |||||||||| |||||||| |||||||| Sbjct: 518 gattgccaaagttttcccctcacgtgaggtccaaaagaatggtatcaagctgtcttggga 577 Query: 471 cctt 474 |||| Sbjct: 578 cctt 581
>gb|AC147460.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAb0050G15, complete sequence Length = 126156 Score = 107 bits (54), Expect = 3e-20 Identities = 105/122 (86%) Strand = Plus / Plus Query: 319 ccacttgatagcttatttgaggagtgcgccagattctttgatcttgatgtggacaatgat 378 ||||||||||| ||||||||||||||| | |||||||||||||||||||| |||||| Sbjct: 61498 ccacttgatagtttatttgaggagtgcaacgagttctttgatcttgatgtggataatgat 61557 Query: 379 ctcatctctaatgaagctggagtgaactttgtgactgccaaagtttccccttcatgtgag 438 ||||| ||||||||||||| |||||||||| ||||||||||| ||| ||| ||||| Sbjct: 61558 ctcatgcctaatgaagctggtcgaaactttgtgattgccaaagttttcccctcacgtgag 61617 Query: 439 gt 440 || Sbjct: 61618 gt 61619 Score = 97.6 bits (49), Expect = 3e-17 Identities = 136/165 (82%) Strand = Plus / Plus Query: 111 ggcggcgcggtacccggcgctcgtaccccgcggaggcgccggttctttcaccggcaccgt 170 |||||||||| ||||||||||||| ||||| || |||| || | ||| |||| ||||| Sbjct: 60735 ggcggcgcggcacccggcgctcgtgccccgtggcggcgaggggtgcttctccgggaccgt 60794 Query: 171 cctcgatgtggtctccaggggcgggatccgcggtggcgaggggaggctctggctctccgt 230 | || |||| | |||||||| ||| |||||| || |||| ||||||||||||||||| Sbjct: 60795 cgcggaagtggcccccaggggcaggagccgcggcggggaggcgaggctctggctctccga 60854 Query: 231 ggacgccatggccagcgccgggctgcggcatgggtgcctcgtctc 275 | |||||||| | |||||| |||||||| ||||||||||||||| Sbjct: 60855 gcccgccatggtcggcgccgcgctgcggcctgggtgcctcgtctc 60899 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Plus Query: 437 aggttcaaaagaatgacatcaagctctcttgggacctt 474 |||| |||||||||| |||||||| |||||||||||| Sbjct: 61722 aggtccaaaagaatggtatcaagctgtcttgggacctt 61759
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 107 bits (54), Expect = 3e-20 Identities = 105/122 (86%) Strand = Plus / Plus Query: 319 ccacttgatagcttatttgaggagtgcgccagattctttgatcttgatgtggacaatgat 378 ||||||||||| ||||||||||||||| | |||||||||||||||||||| |||||| Sbjct: 6212064 ccacttgatagtttatttgaggagtgcaacgagttctttgatcttgatgtggataatgat 6212123 Query: 379 ctcatctctaatgaagctggagtgaactttgtgactgccaaagtttccccttcatgtgag 438 ||||| ||||||||||||| |||||||||| ||||||||||| ||| ||| ||||| Sbjct: 6212124 ctcatgcctaatgaagctggtcgaaactttgtgattgccaaagttttcccctcacgtgag 6212183 Query: 439 gt 440 || Sbjct: 6212184 gt 6212185 Score = 97.6 bits (49), Expect = 3e-17 Identities = 136/165 (82%) Strand = Plus / Plus Query: 111 ggcggcgcggtacccggcgctcgtaccccgcggaggcgccggttctttcaccggcaccgt 170 |||||||||| ||||||||||||| ||||| || |||| || | ||| |||| ||||| Sbjct: 6211301 ggcggcgcggcacccggcgctcgtgccccgtggcggcgaggggtgcttctccgggaccgt 6211360 Query: 171 cctcgatgtggtctccaggggcgggatccgcggtggcgaggggaggctctggctctccgt 230 | || |||| | |||||||| ||| |||||| || |||| ||||||||||||||||| Sbjct: 6211361 cgcggaagtggcccccaggggcaggagccgcggcggggaggcgaggctctggctctccga 6211420 Query: 231 ggacgccatggccagcgccgggctgcggcatgggtgcctcgtctc 275 | |||||||| | |||||| |||||||| ||||||||||||||| Sbjct: 6211421 gcccgccatggtcggcgccgcgctgcggcctgggtgcctcgtctc 6211465 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Plus Query: 437 aggttcaaaagaatgacatcaagctctcttgggacctt 474 |||| |||||||||| |||||||| |||||||||||| Sbjct: 6212288 aggtccaaaagaatggtatcaagctgtcttgggacctt 6212325
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 107 bits (54), Expect = 3e-20 Identities = 105/122 (86%) Strand = Plus / Plus Query: 319 ccacttgatagcttatttgaggagtgcgccagattctttgatcttgatgtggacaatgat 378 ||||||||||| ||||||||||||||| | |||||||||||||||||||| |||||| Sbjct: 6278531 ccacttgatagtttatttgaggagtgcaacgagttctttgatcttgatgtggataatgat 6278590 Query: 379 ctcatctctaatgaagctggagtgaactttgtgactgccaaagtttccccttcatgtgag 438 ||||| ||||||||||||| |||||||||| ||||||||||| ||| ||| ||||| Sbjct: 6278591 ctcatgcctaatgaagctggtcgaaactttgtgattgccaaagttttcccctcacgtgag 6278650 Query: 439 gt 440 || Sbjct: 6278651 gt 6278652 Score = 97.6 bits (49), Expect = 3e-17 Identities = 136/165 (82%) Strand = Plus / Plus Query: 111 ggcggcgcggtacccggcgctcgtaccccgcggaggcgccggttctttcaccggcaccgt 170 |||||||||| ||||||||||||| ||||| || |||| || | ||| |||| ||||| Sbjct: 6277768 ggcggcgcggcacccggcgctcgtgccccgtggcggcgaggggtgcttctccgggaccgt 6277827 Query: 171 cctcgatgtggtctccaggggcgggatccgcggtggcgaggggaggctctggctctccgt 230 | || |||| | |||||||| ||| |||||| || |||| ||||||||||||||||| Sbjct: 6277828 cgcggaagtggcccccaggggcaggagccgcggcggggaggcgaggctctggctctccga 6277887 Query: 231 ggacgccatggccagcgccgggctgcggcatgggtgcctcgtctc 275 | |||||||| | |||||| |||||||| ||||||||||||||| Sbjct: 6277888 gcccgccatggtcggcgccgcgctgcggcctgggtgcctcgtctc 6277932 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Plus Query: 437 aggttcaaaagaatgacatcaagctctcttgggacctt 474 |||| |||||||||| |||||||| |||||||||||| Sbjct: 6278755 aggtccaaaagaatggtatcaagctgtcttgggacctt 6278792
>gb|AC004948.2| Homo sapiens PAC clone RP5-1007H16 from 7, complete sequence Length = 75076 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 140 gcggaggcgccggttctttcacc 162 ||||||||||||||||||||||| Sbjct: 24718 gcggaggcgccggttctttcacc 24740
>emb|AL161498.2|ATCHRIV10 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 10 Length = 196296 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 377 atctcatctctaatgaagctgga 399 ||||||||||||||||||||||| Sbjct: 75063 atctcatctctaatgaagctgga 75041
>gb|DQ003136.1| Homo sapiens replication protein A3, 14kDa (RPA3) gene, complete cds Length = 85575 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 140 gcggaggcgccggttctttcacc 162 ||||||||||||||||||||||| Sbjct: 79335 gcggaggcgccggttctttcacc 79313
>emb|AL138639.1|ATT21C14 Arabidopsis thaliana DNA chromosome 3, BAC clone T21C14 Length = 79677 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 377 atctcatctctaatgaagctgga 399 ||||||||||||||||||||||| Sbjct: 19942 atctcatctctaatgaagctgga 19964
>gb|AF077408.1|T7M24 Arabidopsis thaliana BAC T7M24 Length = 74475 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 377 atctcatctctaatgaagctgga 399 ||||||||||||||||||||||| Sbjct: 22410 atctcatctctaatgaagctgga 22388
>gb|AC079327.3| Homo sapiens chromosome 18, clone RP11-240N5, complete sequence Length = 165642 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 315 cttcccacttgatagcttattt 336 |||||||||||||||||||||| Sbjct: 156731 cttcccacttgatagcttattt 156752
>gb|AC007632.4|AC007632 Homo sapiens clone R529C19B from chromosome 18, complete sequence Length = 205959 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 315 cttcccacttgatagcttattt 336 |||||||||||||||||||||| Sbjct: 99264 cttcccacttgatagcttattt 99243
>gb|AC115800.13| Mus musculus chromosome 8, clone RP23-407E22, complete sequence Length = 228513 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 452 acatcaagctctcttgggacc 472 ||||||||||||||||||||| Sbjct: 70274 acatcaagctctcttgggacc 70254
>gb|AC104266.7| Homo sapiens chromosome 15, clone CTD-3217P20, complete sequence Length = 88425 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 209 aggggaggctctggctctccg 229 ||||||||||||||||||||| Sbjct: 4313 aggggaggctctggctctccg 4333
>gb|AC021316.16| Homo sapiens chromosome 15, clone RP11-11J16, complete sequence Length = 173535 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 209 aggggaggctctggctctccg 229 ||||||||||||||||||||| Sbjct: 14337 aggggaggctctggctctccg 14317
>ref|XM_694041.1| PREDICTED: Danio rerio similar to CG8585-PA (LOC570546), mRNA Length = 1032 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 166 accgtcctcgatgtggtctcc 186 ||||||||||||||||||||| Sbjct: 535 accgtcctcgatgtggtctcc 555
>emb|AJ234590.1|HVU234590 Hordeum vulgare genomic DNA fragment; clone MWG0850.rev Length = 452 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 227 ccgtggacgccatggccagcg 247 ||||||||||||||||||||| Sbjct: 53 ccgtggacgccatggccagcg 33
>gb|AC156802.7| Mus musculus BAC clone RP23-119P9 from chromosome 13, complete sequence Length = 209975 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 ttcccacttgatagcttatt 335 |||||||||||||||||||| Sbjct: 130846 ttcccacttgatagcttatt 130827
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 tctttgatcttgatgtggac 372 |||||||||||||||||||| Sbjct: 2666905 tctttgatcttgatgtggac 2666886 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 gtgcgccagattctttgatc 361 |||||||||||||||||||| Sbjct: 2232045 gtgcgccagattctttgatc 2232026
>ref|XM_714236.1| Candida albicans SC5314 hypothetical protein (CaO19_7567), mRNA Length = 1290 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 cttgatagcttatttgagga 341 |||||||||||||||||||| Sbjct: 1258 cttgatagcttatttgagga 1277
>gb|AC091405.3| Danio rerio clone 188M5, complete sequence Length = 103165 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 agattctttgatcttgatgt 368 |||||||||||||||||||| Sbjct: 47471 agattctttgatcttgatgt 47452
>emb|CR513790.9| Zebrafish DNA sequence from clone CH211-132F7 in linkage group 15, complete sequence Length = 157412 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 agattctttgatcttgatgt 368 |||||||||||||||||||| Sbjct: 146467 agattctttgatcttgatgt 146486
>emb|BX571762.15| Zebrafish DNA sequence from clone CH211-214G1 in linkage group 15, complete sequence Length = 138829 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 agattctttgatcttgatgt 368 |||||||||||||||||||| Sbjct: 72073 agattctttgatcttgatgt 72092
>emb|BX571758.10| Zebrafish DNA sequence from clone CH211-34K1 in linkage group 15, complete sequence Length = 104614 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 agattctttgatcttgatgt 368 |||||||||||||||||||| Sbjct: 93779 agattctttgatcttgatgt 93798
>gb|AC106849.5| Homo sapiens chromosome 11, clone CTD-2154J7, complete sequence Length = 81277 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 401 tgaactttgtgactgccaaagttt 424 |||| ||||||||||||||||||| Sbjct: 27459 tgaattttgtgactgccaaagttt 27482
>gb|AC009379.7| Drosophila melanogaster 3L BAC RP98-48M6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 175963 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 430 tcatgtgaggttcaaaagaatgac 453 |||||| ||||||||||||||||| Sbjct: 27812 tcatgtaaggttcaaaagaatgac 27835
>gb|AC009378.7| Drosophila melanogaster 3L BAC RP98-9E8 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 180387 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 430 tcatgtgaggttcaaaagaatgac 453 |||||| ||||||||||||||||| Sbjct: 82477 tcatgtaaggttcaaaagaatgac 82454
>gb|AC110058.4| Homo sapiens chromosome 11, clone CTD2-3012A18, complete sequence Length = 158915 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 401 tgaactttgtgactgccaaagttt 424 |||| ||||||||||||||||||| Sbjct: 78771 tgaattttgtgactgccaaagttt 78748
>gb|AC160103.2| Mus musculus BAC clone RP24-422I4 from chromosome 13, complete sequence Length = 201998 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 ttcccacttgatagcttatt 335 |||||||||||||||||||| Sbjct: 184551 ttcccacttgatagcttatt 184532
>gb|AC021699.5|AC021699 Homo sapiens chromosome 11, clone RP11-277B22, complete sequence Length = 163386 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 401 tgaactttgtgactgccaaagttt 424 |||| ||||||||||||||||||| Sbjct: 65009 tgaattttgtgactgccaaagttt 65032
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 ggcggcgcggtacccggcgc 130 |||||||||||||||||||| Sbjct: 3636164 ggcggcgcggtacccggcgc 3636145 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 cgccatggccagcgccgggc 253 |||||||||||||||||||| Sbjct: 743749 cgccatggccagcgccgggc 743768
>gb|AE005040.1| Halobacterium sp. NRC-1 section 71 of 170 of the complete genome Length = 10881 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 gaagaagccgtcggtgtccc 22 |||||||||||||||||||| Sbjct: 46 gaagaagccgtcggtgtccc 65
>emb|BX248515.4| Zebrafish DNA sequence from clone DKEY-177P2 in linkage group 20, complete sequence Length = 212105 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 gtttcttcaagtagtaacagttta 309 |||||||||||| ||||||||||| Sbjct: 80443 gtttcttcaagtcgtaacagttta 80466
>gb|AE003518.3| Drosophila melanogaster chromosome 3L, section 67 of 83 of the complete sequence Length = 279088 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 430 tcatgtgaggttcaaaagaatgac 453 |||||| ||||||||||||||||| Sbjct: 261957 tcatgtaaggttcaaaagaatgac 261934
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 162 cggcaccgtcctcgatgtggtctc 185 ||||||||||||||||||| |||| Sbjct: 500103 cggcaccgtcctcgatgtgctctc 500080
>gb|AC005262.1|AC005262 Homo sapiens chromosome 19, cosmid F23990, complete sequence Length = 44235 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 gcgccgggctgcggcatggg 264 |||||||||||||||||||| Sbjct: 26034 gcgccgggctgcggcatggg 26053
>dbj|AB070940.1| Streptomyces avermitilis oligomycin biosynthetic gene cluster Length = 104326 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 ggcggcgcggtacccggcgc 130 |||||||||||||||||||| Sbjct: 1641 ggcggcgcggtacccggcgc 1660 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,384,044 Number of Sequences: 3902068 Number of extensions: 3384044 Number of successful extensions: 62832 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62563 Number of HSP's gapped (non-prelim): 261 length of query: 474 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 452 effective length of database: 17,147,199,772 effective search space: 7750534296944 effective search space used: 7750534296944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)