ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl04b10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY483150.1| Hordeum vulgare putative cellulose synthase catalytic subunit (CesA1) mRNA, complete cds Length = 3605 Score = 484 bits (244), Expect = e-133 Identities = 244/244 (100%) Strand = Plus / Plus Query: 236 gtgggaggagccgctccagctcggttgtcggcggtgccgggttgatcgccctgccgcgcc 295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gtgggaggagccgctccagctcggttgtcggcggtgccgggttgatcgccctgccgcgcc 60 Query: 296 atggacggcgacgcggacgccctgaagtccgggaggcacggggccggggacgtgtgccag 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 atggacggcgacgcggacgccctgaagtccgggaggcacggggccggggacgtgtgccag 120 Query: 356 atctgcgccgacagcctgggcaccacggtggacggcgaggtcttcaccgcctgcgacgtc 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 atctgcgccgacagcctgggcaccacggtggacggcgaggtcttcaccgcctgcgacgtc 180 Query: 416 tgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggcacccaggcc 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggcacccaggcc 240 Query: 476 tgcc 479 |||| Sbjct: 241 tgcc 244
>dbj|AB158407.1| Triticum aestivum CesA mRNA for putative cellulose synthase, complete cds Length = 3681 Score = 464 bits (234), Expect = e-127 Identities = 260/268 (97%), Gaps = 3/268 (1%) Strand = Plus / Plus Query: 212 ccccctccgcgctccggacattgggtgggaggagccgctccagctcggttgtcggcggtg 271 |||||||||||||||| |||||||||||||||||| ||||||||||||||||||| || Sbjct: 5 ccccctccgcgctccgcacattgggtgggaggagctgctccagctcggttgtcgg---tg 61 Query: 272 ccgggttgatcgccctgccgcgccatggacggcgacgcggacgccctgaagtccgggagg 331 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62 ccgggtggatcgccctgccgcgccatggacggcgacgcggacgccctgaagtccgggagg 121 Query: 332 cacggggccggggacgtgtgccagatctgcgccgacagcctgggcaccacggtggacggc 391 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct: 122 cacggggccggggacgtgtgccagatctgcgccgacgggctgggcaccacggtggacggc 181 Query: 392 gaggtcttcaccgcctgcgacgtctgccgcttcccggtctgccgcccctgctacgagcac 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182 gaggtcttcaccgcctgcgacgtctgccgcttcccggtctgccgcccctgctacgagcac 241 Query: 452 gagcgcaaggagggcacccaggcctgcc 479 |||||||||||||||||||||||||||| Sbjct: 242 gagcgcaaggagggcacccaggcctgcc 269
>gb|BT009438.1| Triticum aestivum clone wlmk4.pk0015.a11:fis, full insert mRNA sequence Length = 3626 Score = 373 bits (188), Expect = e-100 Identities = 223/234 (95%), Gaps = 3/234 (1%) Strand = Plus / Plus Query: 246 ccgctccagctcggttgtcggcggtgccgggttgatcgccctgccgcgccatggacggcg 305 |||||||||||| ||||| |||||| || | |||||| |||||||||||||||||||| Sbjct: 13 ccgctccagctc---tgtcgtcggtgcgggttggatcgctctgccgcgccatggacggcg 69 Query: 306 acgcggacgccctgaagtccgggaggcacggggccggggacgtgtgccagatctgcgccg 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70 acgcggacgccctgaagtccgggaggcacggggccggggacgtgtgccagatctgcgccg 129 Query: 366 acagcctgggcaccacggtggacggcgaggtcttcaccgcctgcgacgtctgccgcttcc 425 || |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 130 acggcctgggcaccacgttggacggcgacgtcttcaccgcctgcgacgtctgccgcttcc 189 Query: 426 cggtctgccgcccctgctacgagcacgagcgcaaggagggcacccaggcctgcc 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 190 cggtctgccgcccctgctacgagcacgagcgcaaggagggcacccaggcctgcc 243
>ref|XM_477093.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3954 Score = 200 bits (101), Expect = 3e-48 Identities = 167/189 (88%) Strand = Plus / Plus Query: 291 gcgccatggacggcgacgcggacgccctgaagtccgggaggcacggggccggggacgtgt 350 |||||||||||||||||||||| ||| ||||||| |||||||||||| |||| | | || Sbjct: 432 gcgccatggacggcgacgcggatgccgtgaagtcggggaggcacgggagcgggcaggcgt 491 Query: 351 gccagatctgcgccgacagcctgggcaccacggtggacggcgaggtcttcaccgcctgcg 410 |||||||||||| |||| || ||||||| |||| ||| ||||| || ||| ||||||||| Sbjct: 492 gccagatctgcggcgacggcgtgggcacgacggcggagggcgacgtgttcgccgcctgcg 551 Query: 411 acgtctgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggcaccc 470 |||||||| |||||||||| |||||||||||||||||| ||||||||||||| ||||||| Sbjct: 552 acgtctgcggcttcccggtgtgccgcccctgctacgagtacgagcgcaaggatggcaccc 611 Query: 471 aggcctgcc 479 |||| |||| Sbjct: 612 aggcttgcc 620
>gb|DQ020211.1| Bambusa oldhamii cellulose synthase BoCesA4a mRNA, complete cds Length = 3756 Score = 200 bits (101), Expect = 3e-48 Identities = 167/189 (88%) Strand = Plus / Plus Query: 291 gcgccatggacggcgacgcggacgccctgaagtccgggaggcacggggccggggacgtgt 350 |||||||||| ||||||||||| ||| ||||||| ||||||||||| |||| | |||| Sbjct: 292 gcgccatggagggcgacgcggaggccgtgaagtcggggaggcacggcagcgggcaggtgt 351 Query: 351 gccagatctgcgccgacagcctgggcaccacggtggacggcgaggtcttcaccgcctgcg 410 |||||||||||| |||| || |||||||||||| ||| ||||| |||||| ||||||||| Sbjct: 352 gccagatctgcggcgacggcgtgggcaccacggcggagggcgacgtcttcgccgcctgcg 411 Query: 411 acgtctgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggcaccc 470 |||||||| |||||||||| ||||| |||||||||||| ||||||||||||| ||||||| Sbjct: 412 acgtctgcggcttcccggtgtgccggccctgctacgagtacgagcgcaaggacggcaccc 471 Query: 471 aggcctgcc 479 |||| |||| Sbjct: 472 aggcgtgcc 480
>dbj|AK072356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023059I02, full insert sequence Length = 3954 Score = 200 bits (101), Expect = 3e-48 Identities = 167/189 (88%) Strand = Plus / Plus Query: 291 gcgccatggacggcgacgcggacgccctgaagtccgggaggcacggggccggggacgtgt 350 |||||||||||||||||||||| ||| ||||||| |||||||||||| |||| | | || Sbjct: 432 gcgccatggacggcgacgcggatgccgtgaagtcggggaggcacgggagcgggcaggcgt 491 Query: 351 gccagatctgcgccgacagcctgggcaccacggtggacggcgaggtcttcaccgcctgcg 410 |||||||||||| |||| || ||||||| |||| ||| ||||| || ||| ||||||||| Sbjct: 492 gccagatctgcggcgacggcgtgggcacgacggcggagggcgacgtgttcgccgcctgcg 551 Query: 411 acgtctgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggcaccc 470 |||||||| |||||||||| |||||||||||||||||| ||||||||||||| ||||||| Sbjct: 552 acgtctgcggcttcccggtgtgccgcccctgctacgagtacgagcgcaaggatggcaccc 611 Query: 471 aggcctgcc 479 |||| |||| Sbjct: 612 aggcttgcc 620
>gb|AF200533.1|AF200533 Zea mays cellulose synthase-9 (CesA-9) mRNA, complete cds Length = 3795 Score = 167 bits (84), Expect = 4e-38 Identities = 153/176 (86%) Strand = Plus / Plus Query: 293 gccatggacggcgacgcggacgccctgaagtccgggaggcacggggccggggacgtgtgc 352 |||||||| ||||||||||||| | ||||||| ||||||| ||||| ||| | |||||| Sbjct: 235 gccatggagggcgacgcggacggcgtgaagtcggggaggcgcgggggagggcaggtgtgc 294 Query: 353 cagatctgcgccgacagcctgggcaccacggtggacggcgaggtcttcaccgcctgcgac 412 |||||||||| ||| || ||||||| |||| ||| || || |||||||||||||||||| Sbjct: 295 cagatctgcggcgatggcgtgggcactacggcggagggagacgtcttcaccgcctgcgac 354 Query: 413 gtctgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggcac 468 |||||| | |||||||| |||||||||||||||||| ||||||||||||| ||||| Sbjct: 355 gtctgcgggttcccggtgtgccgcccctgctacgagtacgagcgcaaggacggcac 410
>gb|AF200528.1|AF200528 Zea mays cellulose synthase-4 (CesA-4) mRNA, complete cds Length = 3745 Score = 165 bits (83), Expect = 2e-37 Identities = 161/187 (86%) Strand = Plus / Plus Query: 293 gccatggacggcgacgcggacgccctgaagtccgggaggcacggggccggggacgtgtgc 352 |||||||| ||||||||||||| | ||||||| ||||||| ||| | ||| | |||||| Sbjct: 317 gccatggagggcgacgcggacggcgtgaagtcggggaggcgcggtggcggacaggtgtgc 376 Query: 353 cagatctgcgccgacagcctgggcaccacggtggacggcgaggtcttcaccgcctgcgac 412 |||||||||| |||| || |||||||||||| ||| || || |||||| ||||||||||| Sbjct: 377 cagatctgcggcgacggcgtgggcaccacggcggagggggacgtcttcgccgcctgcgac 436 Query: 413 gtctgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggcacccag 472 |||||| | || ||||| |||||||||||||||||| ||||||||||||| ||||| ||| Sbjct: 437 gtctgcgggtttccggtgtgccgcccctgctacgagtacgagcgcaaggacggcacgcag 496 Query: 473 gcctgcc 479 || |||| Sbjct: 497 gcgtgcc 503
>gb|AY108113.1| Zea mays PCO126465 mRNA sequence Length = 3763 Score = 165 bits (83), Expect = 2e-37 Identities = 161/187 (86%) Strand = Plus / Plus Query: 293 gccatggacggcgacgcggacgccctgaagtccgggaggcacggggccggggacgtgtgc 352 |||||||| ||||||||||||| | ||||||| ||||||| ||| | ||| | |||||| Sbjct: 335 gccatggagggcgacgcggacggcgtgaagtcggggaggcgcggtggcggacaggtgtgc 394 Query: 353 cagatctgcgccgacagcctgggcaccacggtggacggcgaggtcttcaccgcctgcgac 412 |||||||||| |||| || |||||||||||| ||| || || |||||| ||||||||||| Sbjct: 395 cagatctgcggcgacggcgtgggcaccacggcggagggggacgtcttcgccgcctgcgac 454 Query: 413 gtctgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggcacccag 472 |||||| | || ||||| |||||||||||||||||| ||||||||||||| ||||| ||| Sbjct: 455 gtctgcgggtttccggtgtgccgcccctgctacgagtacgagcgcaaggacggcacgcag 514 Query: 473 gcctgcc 479 || |||| Sbjct: 515 gcgtgcc 521
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 161 bits (81), Expect = 3e-36 Identities = 141/161 (87%) Strand = Plus / Minus Query: 319 gaagtccgggaggcacggggccggggacgtgtgccagatctgcgccgacagcctgggcac 378 |||||| |||||||||||| |||| | | |||||||||||||| |||| || ||||||| Sbjct: 5890183 gaagtcggggaggcacgggagcgggcaggcgtgccagatctgcggcgacggcgtgggcac 5890124 Query: 379 cacggtggacggcgaggtcttcaccgcctgcgacgtctgccgcttcccggtctgccgccc 438 |||| ||| ||||| || ||| ||||||||||||||||| |||||||||| |||||||| Sbjct: 5890123 gacggcggagggcgacgtgttcgccgcctgcgacgtctgcggcttcccggtgtgccgccc 5890064 Query: 439 ctgctacgagcacgagcgcaaggagggcacccaggcctgcc 479 |||||||||| ||||||||||||| ||||||||||| |||| Sbjct: 5890063 ctgctacgagtacgagcgcaaggatggcacccaggcttgcc 5890023 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 291 gcgccatggacggcgacgcgga 312 |||||||||||||||||||||| Sbjct: 5890341 gcgccatggacggcgacgcgga 5890320
>gb|DQ020212.1| Bambusa oldhamii cellulose synthase BoCesA4b mRNA, partial cds Length = 3409 Score = 161 bits (81), Expect = 3e-36 Identities = 120/133 (90%) Strand = Plus / Plus Query: 347 gtgtgccagatctgcgccgacagcctgggcaccacggtggacggcgaggtcttcaccgcc 406 |||||||||||||||| |||| || |||||||||||| ||| ||||| |||||| ||||| Sbjct: 4 gtgtgccagatctgcggcgacggcgtgggcaccacggcggagggcgacgtcttcgccgcc 63 Query: 407 tgcgacgtctgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggc 466 |||||||||||| |||||||||| ||||| |||||||||||| ||||||||||||| ||| Sbjct: 64 tgcgacgtctgcggcttcccggtgtgccggccctgctacgagtacgagcgcaaggacggc 123 Query: 467 acccaggcctgcc 479 |||||||| |||| Sbjct: 124 acccaggcgtgcc 136
>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_A05 Length = 120823 Score = 161 bits (81), Expect = 3e-36 Identities = 141/161 (87%) Strand = Plus / Minus Query: 319 gaagtccgggaggcacggggccggggacgtgtgccagatctgcgccgacagcctgggcac 378 |||||| |||||||||||| |||| | | |||||||||||||| |||| || ||||||| Sbjct: 32631 gaagtcggggaggcacgggagcgggcaggcgtgccagatctgcggcgacggcgtgggcac 32572 Query: 379 cacggtggacggcgaggtcttcaccgcctgcgacgtctgccgcttcccggtctgccgccc 438 |||| ||| ||||| || ||| ||||||||||||||||| |||||||||| |||||||| Sbjct: 32571 gacggcggagggcgacgtgttcgccgcctgcgacgtctgcggcttcccggtgtgccgccc 32512 Query: 439 ctgctacgagcacgagcgcaaggagggcacccaggcctgcc 479 |||||||||| ||||||||||||| ||||||||||| |||| Sbjct: 32511 ctgctacgagtacgagcgcaaggatggcacccaggcttgcc 32471 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 291 gcgccatggacggcgacgcgga 312 |||||||||||||||||||||| Sbjct: 32789 gcgccatggacggcgacgcgga 32768
>dbj|AP003837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1559_F09 Length = 87792 Score = 161 bits (81), Expect = 3e-36 Identities = 141/161 (87%) Strand = Plus / Minus Query: 319 gaagtccgggaggcacggggccggggacgtgtgccagatctgcgccgacagcctgggcac 378 |||||| |||||||||||| |||| | | |||||||||||||| |||| || ||||||| Sbjct: 64857 gaagtcggggaggcacgggagcgggcaggcgtgccagatctgcggcgacggcgtgggcac 64798 Query: 379 cacggtggacggcgaggtcttcaccgcctgcgacgtctgccgcttcccggtctgccgccc 438 |||| ||| ||||| || ||| ||||||||||||||||| |||||||||| |||||||| Sbjct: 64797 gacggcggagggcgacgtgttcgccgcctgcgacgtctgcggcttcccggtgtgccgccc 64738 Query: 439 ctgctacgagcacgagcgcaaggagggcacccaggcctgcc 479 |||||||||| ||||||||||||| ||||||||||| |||| Sbjct: 64737 ctgctacgagtacgagcgcaaggatggcacccaggcttgcc 64697 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 291 gcgccatggacggcgacgcgga 312 |||||||||||||||||||||| Sbjct: 65015 gcgccatggacggcgacgcgga 64994
>gb|AF200529.1|AF200529 Zea mays cellulose synthase-5 (CesA-5) mRNA, complete cds Length = 3676 Score = 157 bits (79), Expect = 4e-35 Identities = 162/189 (85%), Gaps = 3/189 (1%) Strand = Plus / Plus Query: 291 gcgccatggacggcgacgcggacgccctgaagtccgggaggcacggggccggggacgtgt 350 ||||||||||||||| | |||||| ||| || |||| ||| | ||||||| | |||| Sbjct: 249 gcgccatggacggcggc---gacgccacgaattcggggaagcatgtggccgggcaggtgt 305 Query: 351 gccagatctgcgccgacagcctgggcaccacggtggacggcgaggtcttcaccgcctgcg 410 |||||||||||| |||| || |||||||| ||| ||||||||| ||||||||||||||| Sbjct: 306 gccagatctgcggcgacggcgtgggcaccgcggcggacggcgacctcttcaccgcctgcg 365 Query: 411 acgtctgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggcaccc 470 |||||||| ||||||| || |||||||| ||||||||| ||||||||||||| ||||||| Sbjct: 366 acgtctgcggcttccccgtgtgccgcccatgctacgagtacgagcgcaaggacggcaccc 425 Query: 471 aggcctgcc 479 |||| |||| Sbjct: 426 aggcgtgcc 434
>gb|AY110079.1| Zea mays CL1164_1 mRNA sequence Length = 3696 Score = 157 bits (79), Expect = 4e-35 Identities = 162/189 (85%), Gaps = 3/189 (1%) Strand = Plus / Plus Query: 291 gcgccatggacggcgacgcggacgccctgaagtccgggaggcacggggccggggacgtgt 350 ||||||||||||||| | |||||| ||| || |||| ||| | ||||||| | |||| Sbjct: 249 gcgccatggacggcggc---gacgccacgaattcggggaagcatgtggccgggcaggtgt 305 Query: 351 gccagatctgcgccgacagcctgggcaccacggtggacggcgaggtcttcaccgcctgcg 410 |||||||||||| |||| || |||||||| ||| ||||||||| ||||||||||||||| Sbjct: 306 gccagatctgcggcgacggcgtgggcaccgcggcggacggcgacctcttcaccgcctgcg 365 Query: 411 acgtctgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggcaccc 470 |||||||| ||||||| || |||||||| ||||||||| ||||||||||||| ||||||| Sbjct: 366 acgtctgcggcttccccgtgtgccgcccatgctacgagtacgagcgcaaggacggcaccc 425 Query: 471 aggcctgcc 479 |||| |||| Sbjct: 426 aggcgtgcc 434
>gb|DQ020213.1| Bambusa oldhamii cellulose synthase BoCesA5 mRNA, complete cds Length = 3613 Score = 153 bits (77), Expect = 6e-34 Identities = 119/133 (89%) Strand = Plus / Plus Query: 347 gtgtgccagatctgcgccgacagcctgggcaccacggtggacggcgaggtcttcaccgcc 406 |||||||||||||||| ||||||| ||||||| |||| |||||||||| | ||||| ||| Sbjct: 263 gtgtgccagatctgcggcgacagcgtgggcacgacggcggacggcgagctgttcacggcc 322 Query: 407 tgcgacgtctgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggc 466 |||||||||||| | |||||||| ||||| |||||||||||| ||||||||||||| ||| Sbjct: 323 tgcgacgtctgcgggttcccggtgtgccggccctgctacgagtacgagcgcaaggacggc 382 Query: 467 acccaggcctgcc 479 |||||||| |||| Sbjct: 383 acccaggcgtgcc 395
>gb|AY483151.1| Hordeum vulgare putative cellulose synthase catalytic subunit (CesA3) mRNA, partial cds Length = 3362 Score = 145 bits (73), Expect = 2e-31 Identities = 118/133 (88%) Strand = Plus / Plus Query: 347 gtgtgccagatctgcgccgacagcctgggcaccacggtggacggcgaggtcttcaccgcc 406 |||||||||||||||| |||| || ||||| | ||| | |||||||| ||||| ||||| Sbjct: 10 gtgtgccagatctgcggcgacggcgtgggcgcggcggcgaacggcgagctcttcgccgcc 69 Query: 407 tgcgacgtctgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggc 466 |||||||||||| |||||| |||||||| |||||||||||| ||||||||||||||||| Sbjct: 70 tgcgacgtctgcgccttccccgtctgccggccctgctacgagtacgagcgcaaggagggc 129 Query: 467 acccaggcctgcc 479 ||||||||||||| Sbjct: 130 acccaggcctgcc 142
>ref|XM_470040.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3607 Score = 131 bits (66), Expect = 2e-27 Identities = 114/130 (87%) Strand = Plus / Plus Query: 350 tgccagatctgcgccgacagcctgggcaccacggtggacggcgaggtcttcaccgcctgc 409 ||||||||||||| |||| || ||||||| ||| |||||||||| |||||||||||||| Sbjct: 422 tgccagatctgcggcgacggcgtgggcacggcggcggacggcgagctcttcaccgcctgc 481 Query: 410 gacgtctgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggcacc 469 ||||||||| | |||||||| ||||| || ||||||||| ||||||||||||| |||| | Sbjct: 482 gacgtctgcgggttcccggtgtgccggccatgctacgagtacgagcgcaaggacggcagc 541 Query: 470 caggcctgcc 479 ||||| |||| Sbjct: 542 caggcgtgcc 551
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 131 bits (66), Expect = 2e-27 Identities = 114/130 (87%) Strand = Plus / Minus Query: 350 tgccagatctgcgccgacagcctgggcaccacggtggacggcgaggtcttcaccgcctgc 409 ||||||||||||| |||| || ||||||| ||| |||||||||| |||||||||||||| Sbjct: 33481894 tgccagatctgcggcgacggcgtgggcacggcggcggacggcgagctcttcaccgcctgc 33481835 Query: 410 gacgtctgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggcacc 469 ||||||||| | |||||||| ||||| || ||||||||| ||||||||||||| |||| | Sbjct: 33481834 gacgtctgcgggttcccggtgtgccggccatgctacgagtacgagcgcaaggacggcagc 33481775 Query: 470 caggcctgcc 479 ||||| |||| Sbjct: 33481774 caggcgtgcc 33481765 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 cccctccccctccgcgctcc 226 |||||||||||||||||||| Sbjct: 14593095 cccctccccctccgcgctcc 14593076
>gb|AC145384.2| Oryza sativa chromosome 3 BAC OSJNBa0060M17 genomic sequence, complete sequence Length = 41693 Score = 131 bits (66), Expect = 2e-27 Identities = 114/130 (87%) Strand = Plus / Minus Query: 350 tgccagatctgcgccgacagcctgggcaccacggtggacggcgaggtcttcaccgcctgc 409 ||||||||||||| |||| || ||||||| ||| |||||||||| |||||||||||||| Sbjct: 11121 tgccagatctgcggcgacggcgtgggcacggcggcggacggcgagctcttcaccgcctgc 11062 Query: 410 gacgtctgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggcacc 469 ||||||||| | |||||||| ||||| || ||||||||| ||||||||||||| |||| | Sbjct: 11061 gacgtctgcgggttcccggtgtgccggccatgctacgagtacgagcgcaaggacggcagc 11002 Query: 470 caggcctgcc 479 ||||| |||| Sbjct: 11001 caggcgtgcc 10992
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete sequence Length = 154555 Score = 131 bits (66), Expect = 2e-27 Identities = 114/130 (87%) Strand = Plus / Plus Query: 350 tgccagatctgcgccgacagcctgggcaccacggtggacggcgaggtcttcaccgcctgc 409 ||||||||||||| |||| || ||||||| ||| |||||||||| |||||||||||||| Sbjct: 16217 tgccagatctgcggcgacggcgtgggcacggcggcggacggcgagctcttcaccgcctgc 16276 Query: 410 gacgtctgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggcacc 469 ||||||||| | |||||||| ||||| || ||||||||| ||||||||||||| |||| | Sbjct: 16277 gacgtctgcgggttcccggtgtgccggccatgctacgagtacgagcgcaaggacggcagc 16336 Query: 470 caggcctgcc 479 ||||| |||| Sbjct: 16337 caggcgtgcc 16346
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 131 bits (66), Expect = 2e-27 Identities = 114/130 (87%) Strand = Plus / Minus Query: 350 tgccagatctgcgccgacagcctgggcaccacggtggacggcgaggtcttcaccgcctgc 409 ||||||||||||| |||| || ||||||| ||| |||||||||| |||||||||||||| Sbjct: 33572404 tgccagatctgcggcgacggcgtgggcacggcggcggacggcgagctcttcaccgcctgc 33572345 Query: 410 gacgtctgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggcacc 469 ||||||||| | |||||||| ||||| || ||||||||| ||||||||||||| |||| | Sbjct: 33572344 gacgtctgcgggttcccggtgtgccggccatgctacgagtacgagcgcaaggacggcagc 33572285 Query: 470 caggcctgcc 479 ||||| |||| Sbjct: 33572284 caggcgtgcc 33572275 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 cccctccccctccgcgctcc 226 |||||||||||||||||||| Sbjct: 14588070 cccctccccctccgcgctcc 14588051
>dbj|AK069196.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003G18, full insert sequence Length = 4282 Score = 131 bits (66), Expect = 2e-27 Identities = 114/130 (87%) Strand = Plus / Plus Query: 350 tgccagatctgcgccgacagcctgggcaccacggtggacggcgaggtcttcaccgcctgc 409 ||||||||||||| |||| || ||||||| ||| |||||||||| |||||||||||||| Sbjct: 311 tgccagatctgcggcgacggcgtgggcacggcggcggacggcgagctcttcaccgcctgc 370 Query: 410 gacgtctgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggcacc 469 ||||||||| | |||||||| ||||| || ||||||||| ||||||||||||| |||| | Sbjct: 371 gacgtctgcgggttcccggtgtgccggccatgctacgagtacgagcgcaaggacggcagc 430 Query: 470 caggcctgcc 479 ||||| |||| Sbjct: 431 caggcgtgcc 440
>gb|AY112236.1| Zea mays CL1160_1 mRNA sequence Length = 3728 Score = 127 bits (64), Expect = 4e-26 Identities = 106/120 (88%) Strand = Plus / Plus Query: 349 gtgccagatctgcgccgacagcctgggcaccacggtggacggcgaggtcttcaccgcctg 408 |||||||||||||| ||| || ||||||| |||| ||| || || |||||||||||||| Sbjct: 291 gtgccagatctgcggcgatggcgtgggcactacggcggagggagacgtcttcaccgcctg 350 Query: 409 cgacgtctgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggcac 468 |||||||||| | |||||||| |||||||||||||||||| ||||||||||||| ||||| Sbjct: 351 cgacgtctgcgggttcccggtgtgccgcccctgctacgagtacgagcgcaaggacggcac 410
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 79.8 bits (40), Expect = 8e-12 Identities = 64/72 (88%) Strand = Plus / Plus Query: 408 gcgacgtctgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggca 467 ||||||||||| |||||||||| |||||||||||||| ||| ||||||| ||||| ||| Sbjct: 288468 gcgacgtctgcggcttcccggtgtgccgcccctgctatgagtacgagcgaaaggatggcg 288527 Query: 468 cccaggcctgcc 479 ||||||| |||| Sbjct: 288528 cccaggcttgcc 288539
>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0005A05 Length = 190834 Score = 79.8 bits (40), Expect = 8e-12 Identities = 64/72 (88%) Strand = Plus / Plus Query: 408 gcgacgtctgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggca 467 ||||||||||| |||||||||| |||||||||||||| ||| ||||||| ||||| ||| Sbjct: 40306 gcgacgtctgcggcttcccggtgtgccgcccctgctatgagtacgagcgaaaggatggcg 40365 Query: 468 cccaggcctgcc 479 ||||||| |||| Sbjct: 40366 cccaggcttgcc 40377
>dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0436E04 Length = 144644 Score = 79.8 bits (40), Expect = 8e-12 Identities = 64/72 (88%) Strand = Plus / Plus Query: 408 gcgacgtctgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggca 467 ||||||||||| |||||||||| |||||||||||||| ||| ||||||| ||||| ||| Sbjct: 130138 gcgacgtctgcggcttcccggtgtgccgcccctgctatgagtacgagcgaaaggatggcg 130197 Query: 468 cccaggcctgcc 479 ||||||| |||| Sbjct: 130198 cccaggcttgcc 130209
>dbj|AK106913.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-A09, full insert sequence Length = 1950 Score = 79.8 bits (40), Expect = 8e-12 Identities = 64/72 (88%) Strand = Plus / Plus Query: 408 gcgacgtctgccgcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggca 467 ||||||||||| |||||||||| |||||||||||||| ||| ||||||| ||||| ||| Sbjct: 909 gcgacgtctgcggcttcccggtgtgccgcccctgctatgagtacgagcgaaaggatggcg 968 Query: 468 cccaggcctgcc 479 ||||||| |||| Sbjct: 969 cccaggcttgcc 980
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 69.9 bits (35), Expect = 7e-09 Identities = 74/87 (85%) Strand = Plus / Plus Query: 386 gacggcgaggtcttcaccgcctgcgacgtctgccgcttcccggtctgccgcccctgctac 445 |||||||| ||||| ||||||| ||| ||| |||||||||| ||||||||||||||| Sbjct: 15226906 gacggcgacctcttcgtcgcctgcaacgagtgcggcttcccggtgtgccgcccctgctac 15226965 Query: 446 gagcacgagcgcaaggagggcacccag 472 ||| |||||||| |||||||||||| Sbjct: 15226966 gagtacgagcgccgcgagggcacccag 15226992
>dbj|AP005579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1740_D06 Length = 187410 Score = 69.9 bits (35), Expect = 7e-09 Identities = 74/87 (85%) Strand = Plus / Plus Query: 386 gacggcgaggtcttcaccgcctgcgacgtctgccgcttcccggtctgccgcccctgctac 445 |||||||| ||||| ||||||| ||| ||| |||||||||| ||||||||||||||| Sbjct: 120882 gacggcgacctcttcgtcgcctgcaacgagtgcggcttcccggtgtgccgcccctgctac 120941 Query: 446 gagcacgagcgcaaggagggcacccag 472 ||| |||||||| |||||||||||| Sbjct: 120942 gagtacgagcgccgcgagggcacccag 120968
>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0418B08 Length = 165909 Score = 69.9 bits (35), Expect = 7e-09 Identities = 74/87 (85%) Strand = Plus / Plus Query: 386 gacggcgaggtcttcaccgcctgcgacgtctgccgcttcccggtctgccgcccctgctac 445 |||||||| ||||| ||||||| ||| ||| |||||||||| ||||||||||||||| Sbjct: 6095 gacggcgacctcttcgtcgcctgcaacgagtgcggcttcccggtgtgccgcccctgctac 6154 Query: 446 gagcacgagcgcaaggagggcacccag 472 ||| |||||||| |||||||||||| Sbjct: 6155 gagtacgagcgccgcgagggcacccag 6181
>dbj|AK121170.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081B08, full insert sequence Length = 3631 Score = 69.9 bits (35), Expect = 7e-09 Identities = 74/87 (85%) Strand = Plus / Plus Query: 386 gacggcgaggtcttcaccgcctgcgacgtctgccgcttcccggtctgccgcccctgctac 445 |||||||| ||||| ||||||| ||| ||| |||||||||| ||||||||||||||| Sbjct: 240 gacggcgacctcttcgtcgcctgcaacgagtgcggcttcccggtgtgccgcccctgctac 299 Query: 446 gagcacgagcgcaaggagggcacccag 472 ||| |||||||| |||||||||||| Sbjct: 300 gagtacgagcgccgcgagggcacccag 326
>gb|AY372246.1| Zea mays cellulose synthase catalytic subunit 12 (CesA12) mRNA, complete cds Length = 3443 Score = 67.9 bits (34), Expect = 3e-08 Identities = 76/90 (84%) Strand = Plus / Plus Query: 379 cacggtggacggcgaggtcttcaccgcctgcgacgtctgccgcttcccggtctgccgccc 438 ||||||||||||||| ||||| ||||||| ||| ||| ||||||| || ||||| || Sbjct: 229 cacggtggacggcgacctcttcgtcgcctgcaacgagtgcggcttccccgtgtgccggcc 288 Query: 439 ctgctacgagcacgagcgcaaggagggcac 468 |||||||||| |||||||| ||||||||| Sbjct: 289 ctgctacgagtacgagcgccgggagggcac 318
>gb|AC135426.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617A08, complete sequence Length = 144781 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 421 cttcccggtctgccgcccctgctacgagcacgagcgcaagga 462 |||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 132977 cttcccggtctgccgcccttgctacgagtacgagcgcaagga 132936
>gb|AC144738.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0029B02, complete sequence Length = 156649 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 421 cttcccggtctgccgcccctgctacgagcacgagcgcaagga 462 |||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 21820 cttcccggtctgccgcccttgctacgagtacgagcgcaagga 21779
>gb|AY483155.1| Hordeum vulgare putative cellulose synthase catalytic subunit (CesA6) mRNA, complete cds Length = 3745 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 421 cttcccggtctgccgcccctgctacgagcacgagcgcaagga 462 |||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 395 cttcccggtctgccgcccttgctacgagtacgagcgcaagga 436
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 421 cttcccggtctgccgcccctgctacgagcacgagcgcaagga 462 |||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 4511353 cttcccggtctgccgcccttgctacgagtacgagcgcaagga 4511312
>dbj|AK102140.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033085K01, full insert sequence Length = 3768 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 421 cttcccggtctgccgcccctgctacgagcacgagcgcaagga 462 |||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 378 cttcccggtctgccgcccttgctacgagtacgagcgcaagga 419
>dbj|AK100188.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034D20, full insert sequence Length = 3897 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 421 cttcccggtctgccgcccctgctacgagcacgagcgcaagga 462 |||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 378 cttcccggtctgccgcccttgctacgagtacgagcgcaagga 419
>dbj|AK099281.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023125F05, full insert sequence Length = 3801 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 421 cttcccggtctgccgcccctgctacgagcacgagcgcaagga 462 |||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 378 cttcccggtctgccgcccttgctacgagtacgagcgcaagga 419
>dbj|AK099228.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091P03, full insert sequence Length = 3732 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 421 cttcccggtctgccgcccctgctacgagcacgagcgcaagga 462 |||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 378 cttcccggtctgccgcccttgctacgagtacgagcgcaagga 419
>dbj|AK098978.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092B06, full insert sequence Length = 3764 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 421 cttcccggtctgccgcccctgctacgagcacgagcgcaagga 462 |||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 378 cttcccggtctgccgcccttgctacgagtacgagcgcaagga 419
>dbj|AK067967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013125H24, full insert sequence Length = 3802 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 421 cttcccggtctgccgcccctgctacgagcacgagcgcaagga 462 |||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 378 cttcccggtctgccgcccttgctacgagtacgagcgcaagga 419
>dbj|AK067850.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123A09, full insert sequence Length = 1444 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 421 cttcccggtctgccgcccctgctacgagcacgagcgcaagga 462 |||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 381 cttcccggtctgccgcccttgctacgagtacgagcgcaagga 422
>gb|AF030052.1|AF030052 Oryza sativa subsp. japonica RSW1-like cellulose synthase catalytic subunit mRNA, partial cds Length = 1838 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 421 cttcccggtctgccgcccctgctacgagcacgagcgcaagga 462 |||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 281 cttcccggtctgccgcccttgctacgagtacgagcgcaagga 322
>gb|DQ020208.1| Bambusa oldhamii cellulose synthase BoCesA1b mRNA, complete cds Length = 3453 Score = 60.0 bits (30), Expect = 7e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 421 cttcccggtctgccgcccctgctacgagcacgagcgcaagga 462 |||||||||||||||||| ||||| ||| ||||||||||||| Sbjct: 365 cttcccggtctgccgcccttgctatgagtacgagcgcaagga 406
>gb|DQ020207.1| Bambusa oldhamii cellulose synthase BoCesA1a mRNA, complete cds Length = 3547 Score = 60.0 bits (30), Expect = 7e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 421 cttcccggtctgccgcccctgctacgagcacgagcgcaagga 462 |||||||||||||||||| ||||| ||| ||||||||||||| Sbjct: 208 cttcccggtctgccgcccttgctatgagtacgagcgcaagga 249
>gb|AY372244.1| Zea mays cellulose synthase catalytic subunit 10 (CesA10) mRNA, complete cds Length = 3470 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 420 gcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggcac 468 ||||||| |||||||| |||||||||||| ||||||||| |||||||| Sbjct: 219 gcttccccgtctgccggccctgctacgagtacgagcgcagcgagggcac 267
>gb|AY110415.1| Zea mays CL1166_1 mRNA sequence Length = 3898 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 421 cttcccggtctgccgcccctgctacgagcacgagcgcaaggaggg 465 |||||| ||||||||||| ||||| ||| |||||||||||||||| Sbjct: 380 cttccctgtctgccgcccttgctatgagtacgagcgcaaggaggg 424
>gb|DQ014506.1| Eucalyptus grandis cellulose synthase 2 (CesA2) mRNA, complete cds Length = 3471 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 403 cgcctgcgacgtctgccgcttcccggtctgccgcccctgctacgagcacgagcgcaagga 462 ||||||| ||| ||| ||||||| ||||||||||||||||||| ||||||||| || Sbjct: 255 cgcctgccacgagtgcggcttccccgtctgccgcccctgctacgtctacgagcgcagcga 314 Query: 463 gggcacccag 472 ||||||||| Sbjct: 315 cggcacccag 324
>gb|AF200526.1|AF200526 Zea mays cellulose synthase-2 (CesA-2) mRNA, complete cds Length = 3725 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 421 cttcccggtctgccgcccctgctacgagcacgagcgcaagga 462 |||||| ||||||||||| ||||| ||| ||||||||||||| Sbjct: 370 cttccctgtctgccgcccttgctatgagtacgagcgcaagga 411
>ref|NM_196933.1| Oryza sativa (japonica cultivar-group) putative cellulose synthase (OSJNBa0006L06.10), mRNA Length = 3408 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 420 gcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggcacccag 472 |||||||||| ||| |||||||||||| ||||||||| |||||||||||| Sbjct: 122 gcttcccggtgtgcaagccctgctacgagtacgagcgcagcgagggcacccag 174
>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence, complete sequence Length = 162339 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 420 gcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggcacccag 472 |||||||||| ||| |||||||||||| ||||||||| |||||||||||| Sbjct: 91755 gcttcccggtgtgcaagccctgctacgagtacgagcgcagcgagggcacccag 91807
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 420 gcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggcacccag 472 |||||||||| ||| |||||||||||| ||||||||| |||||||||||| Sbjct: 16747238 gcttcccggtgtgcaagccctgctacgagtacgagcgcagcgagggcacccag 16747290
>gb|AF200532.1|AF200532 Zea mays cellulose synthase-8 (CesA-8) mRNA, complete cds Length = 3812 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 421 cttcccggtctgccgcccctgctacgagcacgagcgc 457 |||||| ||||||||| ||||||||||| |||||||| Sbjct: 405 cttccccgtctgccgcgcctgctacgagtacgagcgc 441
>gb|AF200525.1|AF200525 Zea mays cellulose synthase-1 (CesA-1) mRNA, complete cds Length = 3752 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 421 cttcccggtctgccgcccctgctacgagcacgagcgcaaggaggg 465 |||||| ||||||||||| ||||| ||| | |||||||||||||| Sbjct: 374 cttccctgtctgccgcccatgctatgagtatgagcgcaaggaggg 418
>dbj|AK072259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009D02, full insert sequence Length = 3426 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 420 gcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggcacccag 472 |||||||||| ||| |||||||||||| ||||||||| |||||||||||| Sbjct: 155 gcttcccggtgtgcaagccctgctacgagtacgagcgcagcgagggcacccag 207
>gb|AY103701.1| Zea mays PCO120363 mRNA sequence Length = 3788 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 421 cttcccggtctgccgcccctgctacgagcacgagcgc 457 |||||| ||||||||| ||||||||||| |||||||| Sbjct: 392 cttccccgtctgccgcgcctgctacgagtacgagcgc 428
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 420 gcttcccggtctgccgcccctgctacgagcacgagcgcaaggagggcacccag 472 |||||||||| ||| |||||||||||| ||||||||| |||||||||||| Sbjct: 16756278 gcttcccggtgtgcaagccctgctacgagtacgagcgcagcgagggcacccag 16756330
>gb|DQ160225.1| Physcomitrella patens cellulose synthase catalytic subunit (CesA7) mRNA, complete cds Length = 4016 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 422 ttcccggtctgccgcccctgctacgag 448 |||||||| |||||||||||||||||| Sbjct: 317 ttcccggtgtgccgcccctgctacgag 343
>gb|DQ160224.1| Physcomitrella patens cellulose synthase catalytic subunit (CesA6) mRNA, complete cds Length = 4070 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 422 ttcccggtctgccgcccctgctacgag 448 |||||||| |||||||||||||||||| Sbjct: 344 ttcccggtgtgccgcccctgctacgag 370
>gb|AC010030.10| Drosophila melanogaster 3L BAC RP98-2C14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 200859 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 199 cccactgccccctccccctccgc 221 ||||||||||||||||||||||| Sbjct: 91717 cccactgccccctccccctccgc 91739
>gb|AE003546.4| Drosophila melanogaster chromosome 3L, section 39 of 83 of the complete sequence Length = 281589 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 199 cccactgccccctccccctccgc 221 ||||||||||||||||||||||| Sbjct: 20331 cccactgccccctccccctccgc 20353
>gb|AC068858.10| Homo sapiens chromosome 11, clone RP11-255G5, complete sequence Length = 113958 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 191 ctgccatccccactgccccctc 212 |||||||||||||||||||||| Sbjct: 77965 ctgccatccccactgccccctc 77986
>ref|XM_774943.1| PREDICTED: Strongylocentrotus purpuratus similar to Niemann-Pick disease, type C1, transcript variant 1 (LOC579887), mRNA Length = 4206 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 198 ccccactgccccctccccctcc 219 |||||||||||||||||||||| Sbjct: 833 ccccactgccccctccccctcc 854
>ref|XM_796641.1| PREDICTED: Strongylocentrotus purpuratus similar to Niemann-Pick disease, type C1, transcript variant 2 (LOC579887), mRNA Length = 4314 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 198 ccccactgccccctccccctcc 219 |||||||||||||||||||||| Sbjct: 833 ccccactgccccctccccctcc 854
>dbj|AK030535.1| Mus musculus adult male pituitary gland cDNA, RIKEN full-length enriched library, clone:5330428H05 product:unclassifiable, full insert sequence Length = 2728 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1 aaaaacaaaagatattaatccaaaac 26 |||||||||||||| ||||||||||| Sbjct: 2096 aaaaacaaaagatactaatccaaaac 2121
>gb|AC155943.9| Mus musculus 10 BAC RP24-461P19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 158911 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1 aaaaacaaaagatattaatccaaaac 26 |||||||||||||| ||||||||||| Sbjct: 140037 aaaaacaaaagatactaatccaaaac 140062
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 238 gggaggagccgctccagctcgg 259 |||||||||||||||||||||| Sbjct: 3786976 gggaggagccgctccagctcgg 3786955
>ref|XM_516181.1| PREDICTED: Pan troglodytes similar to RAB17, member RAS oncogene family (LOC460049), mRNA Length = 2145 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 gggaggcacggggccggggac 346 ||||||||||||||||||||| Sbjct: 256 gggaggcacggggccggggac 236
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 290 cgcgccatggacggcgacgcg 310 ||||||||||||||||||||| Sbjct: 2097739 cgcgccatggacggcgacgcg 2097759
>gb|AC161530.4| Mus musculus chromosome 18, clone RP24-339M16, complete sequence Length = 168512 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 gccgcgccatggacggcgacg 308 ||||||||||||||||||||| Sbjct: 4187 gccgcgccatggacggcgacg 4167
>ref|XM_974899.1| PREDICTED: Mus musculus RIKEN cDNA 5730405I09 gene, transcript variant 4 (5730405I09Rik), mRNA Length = 7274 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 gccgcgccatggacggcgacg 308 ||||||||||||||||||||| Sbjct: 63 gccgcgccatggacggcgacg 43
>gb|BC035524.1| Mus musculus RIKEN cDNA 5730405I09 gene, mRNA (cDNA clone MGC:40707 IMAGE:4974858), complete cds Length = 2525 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 gccgcgccatggacggcgacg 308 ||||||||||||||||||||| Sbjct: 184 gccgcgccatggacggcgacg 164
>gb|BC023321.1| Mus musculus RIKEN cDNA 5730405I09 gene, mRNA (cDNA clone MGC:28252 IMAGE:3995040), complete cds Length = 2104 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 gccgcgccatggacggcgacg 308 ||||||||||||||||||||| Sbjct: 323 gccgcgccatggacggcgacg 303
>dbj|AK006341.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700025H17 product:RIKEN cDNA 1700025H17 gene, full insert sequence Length = 868 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 gccgcgccatggacggcgacg 308 ||||||||||||||||||||| Sbjct: 208 gccgcgccatggacggcgacg 188
>gb|AC158568.6| Mus musculus chromosome 18, clone RP24-249D7, complete sequence Length = 151345 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 gccgcgccatggacggcgacg 308 ||||||||||||||||||||| Sbjct: 59590 gccgcgccatggacggcgacg 59610
>dbj|AK028696.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732438K01 product:CYCLIN-BOX CARRYING PROTEIN homolog [Homo sapiens], full insert sequence Length = 4018 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 gccgcgccatggacggcgacg 308 ||||||||||||||||||||| Sbjct: 355 gccgcgccatggacggcgacg 335
>gb|AC007326.28| Homo sapiens chromosome 22 clone p423 map 22q11, complete sequence Length = 102898 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 459 aggagggcacccaggcctgcc 479 ||||||||||||||||||||| Sbjct: 81836 aggagggcacccaggcctgcc 81856
>gb|AC000069.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 103a2 In DGCR Region, complete sequence Length = 39859 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 459 aggagggcacccaggcctgcc 479 ||||||||||||||||||||| Sbjct: 17256 aggagggcacccaggcctgcc 17276
>dbj|AK017493.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730405I09 product:CYCLIN-BOX CARRYING PROTEIN homolog [Homo sapiens], full insert sequence Length = 1947 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 gccgcgccatggacggcgacg 308 ||||||||||||||||||||| Sbjct: 187 gccgcgccatggacggcgacg 167
>dbj|AK014201.1| Mus musculus 13 days embryo head cDNA, RIKEN full-length enriched library, clone:3110050L10 product:weakly similar to CYCLIN-BOX CARRYING PROTEIN [Homo sapiens], full insert sequence Length = 1048 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 gccgcgccatggacggcgacg 308 ||||||||||||||||||||| Sbjct: 358 gccgcgccatggacggcgacg 338
>gb|AC117540.9| Mus musculus chromosome 18, clone RP23-131B4, complete sequence Length = 198854 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 gccgcgccatggacggcgacg 308 ||||||||||||||||||||| Sbjct: 128830 gccgcgccatggacggcgacg 128850
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 295 catggacggcgacgcggacgccctg 319 |||||||| |||||||||||||||| Sbjct: 524243 catggacgccgacgcggacgccctg 524219
>ref|NM_026484.2| Mus musculus RIKEN cDNA 5730405I09 gene (5730405I09Rik), mRNA Length = 4018 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 gccgcgccatggacggcgacg 308 ||||||||||||||||||||| Sbjct: 355 gccgcgccatggacggcgacg 335
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 tgccgggttgatcgccctgc 289 |||||||||||||||||||| Sbjct: 2361290 tgccgggttgatcgccctgc 2361309
>gb|AC136475.7| Homo sapiens chromosome 11, clone RP11-326C3, complete sequence Length = 143779 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 ccccactgccccctccccct 217 |||||||||||||||||||| Sbjct: 116037 ccccactgccccctccccct 116018
>gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genomic sequence, complete sequence Length = 147130 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 cccctccccctccgcgctcc 226 |||||||||||||||||||| Sbjct: 64616 cccctccccctccgcgctcc 64635
>gb|AC138230.5| Homo sapiens chromosome 11, clone RP13-317D12, complete sequence Length = 187160 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 ccccactgccccctccccct 217 |||||||||||||||||||| Sbjct: 48734 ccccactgccccctccccct 48715
>tpg|BK002510.1| TPA: TPA_inf: Drosophila melanogaster HDC13343 (HDC13343) gene, complete cds Length = 640 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 aaaacaaaagatattaatccaaaa 25 ||||||||||||||||| |||||| Sbjct: 256 aaaacaaaagatattaagccaaaa 233
>gb|AC159747.8| Mus musculus 10 BAC RP23-416G20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 194198 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 aggagggcacccaggcctgc 478 |||||||||||||||||||| Sbjct: 30706 aggagggcacccaggcctgc 30725
>gb|AC009211.5|AC009211 Drosophila melanogaster, chromosome 3R, region 87D11-87E3, BAC clone BACR48D15, complete sequence Length = 184272 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 aaaacaaaagatattaatccaaaa 25 ||||||||||||||||| |||||| Sbjct: 57751 aaaacaaaagatattaagccaaaa 57728
>gb|AC093110.4| Homo sapiens BAC clone RP11-564H16 from 2, complete sequence Length = 168550 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tccccactgccccctccccc 216 |||||||||||||||||||| Sbjct: 65801 tccccactgccccctccccc 65820
>gb|AC092139.5| Homo sapiens chromosome 16 clone RP11-391L3, complete sequence Length = 191731 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 ccactgccccctccccctcc 219 |||||||||||||||||||| Sbjct: 96832 ccactgccccctccccctcc 96851
>gb|AC079923.5| Homo sapiens BAC clone RP11-445N10 from 2, complete sequence Length = 121655 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 gctaattaatcaaccaatcc 70 |||||||||||||||||||| Sbjct: 37302 gctaattaatcaaccaatcc 37283
>gb|AC024361.21| Homo sapiens chromosome 17, clone RP11-388C12, complete sequence Length = 111473 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 ggagggcacccaggcctgcc 479 |||||||||||||||||||| Sbjct: 87802 ggagggcacccaggcctgcc 87783
>gb|AC068014.16| Homo sapiens chromosome 17, clone RP11-567O16, complete sequence Length = 148509 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 ggagggcacccaggcctgcc 479 |||||||||||||||||||| Sbjct: 85817 ggagggcacccaggcctgcc 85836
>gb|DQ020486.1| Sus scrofa clone BAC KNP_290F2, complete sequence Length = 123277 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 ccatccccactgccccctcc 213 |||||||||||||||||||| Sbjct: 15568 ccatccccactgccccctcc 15587
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 tcttcaccgcctgcgacgtc 415 |||||||||||||||||||| Sbjct: 1681112 tcttcaccgcctgcgacgtc 1681131
>gb|AE003698.3| Drosophila melanogaster chromosome 3R, section 36 of 118 of the complete sequence Length = 247955 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 aaaacaaaagatattaatccaaaa 25 ||||||||||||||||| |||||| Sbjct: 175896 aaaacaaaagatattaagccaaaa 175873
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 catggacggcgacgcggacg 314 |||||||||||||||||||| Sbjct: 1043437 catggacggcgacgcggacg 1043418
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 351 gccagatctgcgccgacagcctgg 374 |||||||| ||||||||||||||| Sbjct: 1089165 gccagatcggcgccgacagcctgg 1089142
>emb|CR956397.19| Pig DNA sequence from clone CH242-259E5 on chromosome 17, complete sequence Length = 177531 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 187 cccgctgccatccccactgccccctccc 214 |||||| |||||||| |||||||||||| Sbjct: 146165 cccgctcccatccccgctgccccctccc 146192
>emb|BX295537.1| Platypus DNA sequence from clone XX-200B24, complete sequence Length = 137155 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 ccccactgccccctccccct 217 |||||||||||||||||||| Sbjct: 120117 ccccactgccccctccccct 120136 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,958,936 Number of Sequences: 3902068 Number of extensions: 3958936 Number of successful extensions: 99460 Number of sequences better than 10.0: 104 Number of HSP's better than 10.0 without gapping: 106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98131 Number of HSP's gapped (non-prelim): 1328 length of query: 479 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 457 effective length of database: 17,147,199,772 effective search space: 7836270295804 effective search space used: 7836270295804 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
