ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl04b08 |
|---|---|
| Clone Library Name | barley_pub |
>SLD3_YEAST (P53135) DNA replication regulator SLD3| Length = 668 Score = 35.4 bits (80), Expect = 0.070 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +3 Query: 159 DPYGPGFFFRWRFTYI*TYRMPRGRGSSVSTQEKPNA 269 + YGPGF+ +W + Y Y +P R V+T E+ A Sbjct: 63 EEYGPGFWVKWPYNYFNGYSLPERRTEVVTTVERERA 99
>CORO7_MOUSE (Q9D2V7) Coronin-7 (70 kDa WD repeat tumor rejection antigen| homolog) Length = 922 Score = 29.6 bits (65), Expect = 3.8 Identities = 16/49 (32%), Positives = 24/49 (48%) Frame = +1 Query: 214 TECLEGEVRLCQPKRSLMLMQQSILTNITAGIRGALICCWGCLYFSFMD 360 T C +G VR+ +P+ S + +Q+ G R +C GCL S D Sbjct: 651 TVCKDGHVRVYEPRSSPLPLQEGPGPEGGRGARIVWVCDGGCLLVSGFD 699
>ADA2B_BOVIN (O77700) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) (Fragment) Length = 392 Score = 24.3 bits (51), Expect(2) = 4.0 Identities = 9/34 (26%), Positives = 17/34 (50%) Frame = +1 Query: 253 KRSLMLMQQSILTNITAGIRGALICCWGCLYFSF 354 +R L ++ T + A + G + CW +FS+ Sbjct: 342 RRRTQLSREKRFTFVLAVVIGVFVLCWFPFFFSY 375 Score = 23.9 bits (50), Expect(2) = 4.0 Identities = 13/44 (29%), Positives = 18/44 (40%) Frame = +2 Query: 20 CCLPTRKQRGDRNPNGLPPHPLPFQTAGVHAEPASLCSSPRRRP 151 C ++ + G P LP A PAS CS P ++P Sbjct: 278 CGSSPEEEAEEEEEEGCEPQALP-------ASPASACSPPLQQP 314
>ESR2_BOVIN (Q9XSB5) Estrogen receptor beta (ER-beta)| Length = 527 Score = 29.3 bits (64), Expect = 5.0 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +2 Query: 44 RGDRNPNGLPPHPLPFQTAGVHAEPASLCSSPRRRPLWRSVRA 172 R +PN L P P +H +P+ L + P++ P WR R+ Sbjct: 68 RQTTSPNVLWPTPGHLSPLAIHCQPSVLYAEPQKSP-WRETRS 109
>ZAR1_FUGRU (Q7T3T9) Zygote arrest 1 (Oocyte-specific maternal effect factor)| Length = 320 Score = 29.3 bits (64), Expect = 5.0 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = -1 Query: 229 PRGILYV*M*VKRQRKKNPGPYGSP 155 PR +L V ++R+RK NPGP G+P Sbjct: 97 PRTLLVVKRELRRRRKLNPGPPGTP 121
>EAAT_ONCVO (Q25605) Excitatory amino acid transporter (Sodium-dependent| glutamate/ aspartate transporter) Length = 492 Score = 29.3 bits (64), Expect = 5.0 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Frame = +1 Query: 262 LMLMQQSILTNITAG--IRGALICCWGCLYFSFMDPGLFTVCSLQIFLCPLMLSRLVSGG 435 L+L S++ G +RG + +Y SF PG + L++ + PL++S L+SG Sbjct: 11 LVLTVSSVVLGALCGFLLRGLQLSPQNIMYISF--PGELLMHMLKMMILPLIMSSLISGL 68 Query: 436 SQ 441 +Q Sbjct: 69 AQ 70
>EAA1_CAEEL (Q10901) Excitatory amino acid transporter (Sodium-dependent| glutamate/ aspartate transporter) Length = 503 Score = 29.3 bits (64), Expect = 5.0 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Frame = +1 Query: 262 LMLMQQSILTNITAG--IRGALICCWGCLYFSFMDPGLFTVCSLQIFLCPLMLSRLVSGG 435 L+L S++ G +RG + +Y SF PG + L++ + PL++S L+SG Sbjct: 22 LVLTVSSVVLGALCGFLLRGLQLSPQNIMYISF--PGELLMHMLKMMILPLIMSSLISGL 79 Query: 436 SQ 441 +Q Sbjct: 80 AQ 81
>TCB1_RABIT (P06333) T-cell receptor beta chain ANA 11| Length = 319 Score = 28.9 bits (63), Expect = 6.6 Identities = 21/80 (26%), Positives = 29/80 (36%) Frame = +2 Query: 23 CLPTRKQRGDRNPNGLPPHPLPFQTAGVHAEPASLCSSPRRRPLWRSVRAWILLPLAFHL 202 C PTR R P + PH +P R + A +LLP H Sbjct: 104 CAPTRTYAHTRAPTHVHPH----------------------KPRPRQLSAALLLPTPLHF 141 Query: 203 HLNIQNASRARFVCVNPREA 262 ++ N S + V +P EA Sbjct: 142 PEDLANVSAPQVVVFDPSEA 161
>IER5_MOUSE (O89113) Immediate early response gene 5 protein| Length = 308 Score = 28.9 bits (63), Expect = 6.6 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Frame = +2 Query: 17 CCCLPTRKQRGDRNPNGLPPHPLPFQ--TAGVHAEPASLCSSPRRRPL 154 C C P ++R + + PP P P + AGV AS CS+P PL Sbjct: 174 CGCPPAVEERSSEDGSPAPPAPCPRKRGAAGVGGGRAS-CSAPGSTPL 220
>FOXJ2_MOUSE (Q9ES18) Forkhead box protein J2 (Fork head homologous X)| Length = 565 Score = 28.9 bits (63), Expect = 6.6 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 3/47 (6%) Frame = +2 Query: 20 CCLPTRKQRGDRN---PNGLPPHPLPFQTAGVHAEPASLCSSPRRRP 151 C P KQ G P G+ HP P Q G H S P ++P Sbjct: 337 CTTPGGKQAGAEGYGPPTGMAMHPPPLQHGGYHPHQHHPHSHPAQQP 383
>ADA2B_TALEU (O19091) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) (Fragment) Length = 397 Score = 24.6 bits (52), Expect(2) = 8.5 Identities = 12/46 (26%), Positives = 21/46 (45%) Frame = +1 Query: 253 KRSLMLMQQSILTNITAGIRGALICCWGCLYFSFMDPGLFTVCSLQ 390 +R L ++ T + A + G + CW +FS+ L +C Q Sbjct: 347 RRRTQLSREKRFTFVLAVVIGVFVLCWFPFFFSY---SLGAICPQQ 389 Score = 22.3 bits (46), Expect(2) = 8.5 Identities = 12/50 (24%), Positives = 20/50 (40%) Frame = +2 Query: 23 CLPTRKQRGDRNPNGLPPHPLPFQTAGVHAEPASLCSSPRRRPLWRSVRA 172 C + ++ + G + + A PAS CS P ++P V A Sbjct: 277 CEASLEEEAEEEEEGEEEREEECEPQALPASPASACSPPLQQPQGSQVLA 326 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,600,299 Number of Sequences: 219361 Number of extensions: 1264941 Number of successful extensions: 3753 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3597 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3749 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
