ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl04b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DRE2A_ARATH (O82132) Dehydration-responsive element-binding prot... 29 2.5
2RV167_YEAST (P39743) Reduced viability upon starvation protein 167 29 3.2
3DRE2B_ARATH (O82133) Dehydration-responsive element-binding prot... 28 4.2
4DRE2E_ARATH (O80917) Dehydration-responsive element-binding prot... 28 5.5
5UBX_DROPS (P20822) Homeotic protein ultrabithorax (Fragment) 27 9.3
6MY18B_HUMAN (Q8IUG5) Myosin-18B (Myosin XVIIIb) 27 9.3
7DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in azoosp... 27 9.3

>DRE2A_ARATH (O82132) Dehydration-responsive element-binding protein 2A (DREB2A|
           protein)
          Length = 335

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +1

Query: 1   RRVETDGSKKGIGHGLGRVQTTNCEKSGGRGKATAKTKPRHRRPRHG 141
           R+V   GSKKG   G G  + + C   G R +   K     R P  G
Sbjct: 54  RKVPAKGSKKGCMKGKGGPENSRCSFRGVRQRIWGKWVAEIREPNRG 100



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>RV167_YEAST (P39743) Reduced viability upon starvation protein 167|
          Length = 482

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +2

Query: 101 RRKQSLATAV--PVTGXXXXXXXXXXXXXXXXLYIASTSASASPQGRGEPEHARSHASQP 274
           RRK  +ATA   PV+G                 Y  +T+ S +P G G    A S+A+QP
Sbjct: 288 RRKYGVATAEGSPVSGASSGVGYGAG-------YDPATATSPTPTGYGYGAAAPSYAAQP 340

Query: 275 AA 280
           AA
Sbjct: 341 AA 342



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>DRE2B_ARATH (O82133) Dehydration-responsive element-binding protein 2B (DREB2B|
           protein)
          Length = 330

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 1   RRVETDGSKKGIGHGLGRVQTTNCEKSGGRGKATAKTKPRHRRPRHG 141
           R+V   GSKKG   G G    ++C   G R +   K     R P+ G
Sbjct: 53  RKVPAKGSKKGCMKGKGGPDNSHCSFRGVRQRIWGKWVAEIREPKIG 99



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>DRE2E_ARATH (O80917) Dehydration-responsive element-binding protein 2E (DREB2E|
           protein)
          Length = 244

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +1

Query: 1   RRVETDGSKKGIGHGLGRVQTTNCEKSGGRGKATAKTKPRHRRP 132
           RRV+  GSKKG   G G  +   C   G R +   K     R P
Sbjct: 45  RRVQAKGSKKGCMRGKGGPENPVCRFRGVRQRVWGKWVAEIREP 88



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>UBX_DROPS (P20822) Homeotic protein ultrabithorax (Fragment)|
          Length = 306

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +1

Query: 31  GIGHGLGRVQTTNCEKSGGRGKATAKTKPRHRRPRH 138
           G+G G G     NC  SG     TA     H+   H
Sbjct: 205 GVGAGAGTAWNANCTISGAAAAQTAAASSLHQASNH 240



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>MY18B_HUMAN (Q8IUG5) Myosin-18B (Myosin XVIIIb)|
          Length = 2567

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 34  IGHGLGRVQTTNCEKSGGRGKATAKTKPRHRRPRHG 141
           +G GLG  +TT  +++  +GK    T+P+ + P  G
Sbjct: 241 VGKGLGTPKTTELKEAEPQGKDRQGTRPQAQGPGEG 276



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>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1) (Proline-rich Vg1
           mRNA-binding protein)
          Length = 360

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 92  PRPPLFSQFVVCTLPSP*PMP 30
           P PP F+ F+V T P P P P
Sbjct: 256 PPPPSFAPFLVSTTPGPFPPP 276


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.135    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,336,085
Number of Sequences: 219361
Number of extensions: 590063
Number of successful extensions: 1862
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1861
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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