ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl04b01 |
|---|---|
| Clone Library Name | barley_pub |
>UBP14_ARATH (Q8L6Y1) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) (AtUBP14) (TITAN-6 protein) Length = 797 Score = 202 bits (515), Expect = 3e-52 Identities = 95/131 (72%), Positives = 114/131 (87%) Frame = +3 Query: 105 NLHKVRIPEPTNRIHKDECCVSFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYL 284 NL +V+IPEPT+RI+K ECC+SFDTPRSEGGL+VDMNSFL FG+++V+WN+EK+ NPVYL Sbjct: 7 NLSRVQIPEPTHRIYKHECCISFDTPRSEGGLFVDMNSFLAFGKDYVSWNYEKTGNPVYL 66 Query: 285 HIVQRRKPEPDETDRPLKKPTLLAIGVEGGFGEQEPEYDVTYEIVILPEFESLPFPSVDL 464 HI Q RK P+ DRPLKKPTLLAIGV+GGF EPEY+ +Y IVILP+F SLPFPSV+L Sbjct: 67 HIKQTRKSIPE--DRPLKKPTLLAIGVDGGFDNNEPEYEESYSIVILPDFVSLPFPSVEL 124 Query: 465 PEKVRLAVDKV 497 PEKVR+AVD V Sbjct: 125 PEKVRIAVDTV 135
>UBP5_MOUSE (P56399) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 121 bits (304), Expect = 9e-28 Identities = 64/132 (48%), Positives = 90/132 (68%), Gaps = 8/132 (6%) Frame = +3 Query: 108 LHKVRIPEPTNRIHKDECCVSFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYLH 287 L +R+P+ +R+HKDEC SFDTP SEGGLY+ MN+FLGFG+++V +F K+ VYLH Sbjct: 13 LPTIRVPKAGDRVHKDECAFSFDTPESEGGLYICMNTFLGFGKQYVERHFNKTGQRVYLH 72 Query: 288 IVQRRKPEPDET-----DRPLKKPTLLAIGVEGGFG--EQEPEYDVTYEIVILPEFESLP 446 + + R+P+ ++T D P KKPT LAIGVEGGF E + E+D +IVILP++ + Sbjct: 73 LRRTRRPKEEDTSAGTGDPPRKKPTRLAIGVEGGFDLTEDKFEFDEDVKIVILPDYLEIA 132 Query: 447 FPSV-DLPEKVR 479 + LP+ VR Sbjct: 133 RDGLGGLPDIVR 144
>UBP5_HUMAN (P45974) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 119 bits (297), Expect = 6e-27 Identities = 63/132 (47%), Positives = 89/132 (67%), Gaps = 8/132 (6%) Frame = +3 Query: 108 LHKVRIPEPTNRIHKDECCVSFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYLH 287 L +R+P+ +R+HKDEC SFDTP SEGGLY+ MN+FLGFG+++V +F K+ VYLH Sbjct: 13 LPTIRVPKAGDRVHKDECAFSFDTPESEGGLYICMNTFLGFGKQYVERHFNKTGQRVYLH 72 Query: 288 IVQRRKPEPDET-----DRPLKKPTLLAIGVEGGF--GEQEPEYDVTYEIVILPEFESLP 446 + + R+P+ ++ D P KKPT LAIGVEGGF E++ E D +IVILP++ + Sbjct: 73 LRRTRRPKEEDPATGTGDPPRKKPTRLAIGVEGGFDLSEEKFELDEDVKIVILPDYLEIA 132 Query: 447 FPSV-DLPEKVR 479 + LP+ VR Sbjct: 133 RDGLGGLPDIVR 144
>UBPA_DICDI (P54201) Ubiquitin carboxyl-terminal hydrolase A (EC 3.1.2.15)| (Ubiquitin thioesterase A) (Ubiquitin-specific-processing protease A) (Deubiquitinating enzyme A) Length = 837 Score = 89.0 bits (219), Expect = 6e-18 Identities = 48/138 (34%), Positives = 78/138 (56%), Gaps = 8/138 (5%) Frame = +3 Query: 108 LHKVRIPEPTNRIHKDECCVSFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYLH 287 L +++P +R+ KDECC FDTP + GL++D+ L F +++V N +K+ + +YL+ Sbjct: 7 LKNIKVPTEKSRLWKDECCYCFDTPENGEGLFIDLIGLLAFSKKYVQLNHQKTHHHLYLN 66 Query: 288 -----IVQRRKPEPD-ETDRPLKKPTLLAIGVEGGFG--EQEPEYDVTYEIVILPEFESL 443 IV + P E K P LAIGVEGGF ++E +Y+ Y++ I P+ + L Sbjct: 67 FKKVAIVNEKVKSPTIENGGEEKPPKKLAIGVEGGFNVEDEEIKYEEHYKLYIFPDDKFL 126 Query: 444 PFPSVDLPEKVRLAVDKV 497 +PE VR+ +K+ Sbjct: 127 ELSDPIIPENVRVCCEKI 144
>UBP13_HUMAN (Q92995) Ubiquitin carboxyl-terminal hydrolase 13 (EC 3.1.2.15)| (Ubiquitin thioesterase 13) (Ubiquitin-specific-processing protease 13) (Deubiquitinating enzyme 13) (Isopeptidase T-3) (ISOT-3) Length = 863 Score = 86.7 bits (213), Expect = 3e-17 Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 6/133 (4%) Frame = +3 Query: 117 VRIPEPTNRIHKDECCVSFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYLHIVQ 296 +R+P +R++K+EC S+D+P SEGGLYV MN+FL FGREHV +F K+ VY+H+ + Sbjct: 35 IRVPRSGDRVYKNECAFSYDSPNSEGGLYVCMNTFLAFGREHVERHFRKTGQSVYMHLKR 94 Query: 297 R-----RKPEPDETDRPLKKPTLLAIGVEGGFGEQEPEYDVTYEIVILPEFESLPFPSV- 458 R + L + + + EY+ ++VI P+ + P++ Sbjct: 95 HAREKVRGASGGALPKRRNSKIFLDLDTDDDLNSDDYEYEDEAKLVIFPDHYEIALPNIE 154 Query: 459 DLPEKVRLAVDKV 497 +LP V +A D V Sbjct: 155 ELPALVTIACDAV 167
>UBP14_SCHPO (Q11119) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) (UBA-domain-containing protein 2) Length = 775 Score = 38.1 bits (87), Expect = 0.013 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 4/102 (3%) Frame = +3 Query: 117 VRIPEPTNRIHKDECCVSFDTPRSEGGLYVDMNSFLG----FGREHVAWNFEKSENPVYL 284 V IP+ + I+++EC F++ EGG+ + + F G +H +FE++ +P+ + Sbjct: 11 VVIPDNSQVIYREECVRCFNSQDEEGGIDLCLTCFQSGCGETGLKHSLVHFEQTLHPIVV 70 Query: 285 HIVQRRKPEPDETDRPLKKPTLLAIGVEGGFGEQEPEYDVTY 410 I R+P+ D P +K T L I + E YD Y Sbjct: 71 TIA--RQPKQKINDEPPQKITKLEIRED----SDEDLYDYFY 106
>POLR_TYMVC (P28477) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1844 Score = 30.8 bits (68), Expect = 2.1 Identities = 24/79 (30%), Positives = 42/79 (53%) Frame = +3 Query: 168 SFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYLHIVQRRKPEPDETDRPLKKPT 347 S++ P S+ ++ +NS + G H++ +S PV+ ++QR P PD + + PT Sbjct: 208 SYNQP-SDAHSWLRINS-IRLGNHHLSVTILESWGPVHSLLIQRGTPPPDPSLQ--APPT 263 Query: 348 LLAIGVEGGFGEQEPEYDV 404 L+A + + QEP DV Sbjct: 264 LMASDLFRSY--QEPRLDV 280
>CWLO_BACLD (Q65NQ9) Peptidoglycan DL-endopeptidase cwlO precursor (EC 3.4.-.-)| (D-gamma-glutamyl-meso-diaminopimelyl DL-endopeptidase) Length = 452 Score = 30.0 bits (66), Expect = 3.6 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = -1 Query: 463 KSTDGNGRDSNSGKITIS*VTSYSGSCSPKPPSTP 359 KS G+ SNSG ++ S +S SGS S K S+P Sbjct: 273 KSDSGSSSSSNSGSVSKSDGSSNSGSSSSKKSSSP 307
>PYR2_ANASP (P31329) Phycobilisome 34.5 kDa linker polypeptide,| phycoerythrocyanin-associated, rod Length = 277 Score = 30.0 bits (66), Expect = 3.6 Identities = 15/67 (22%), Positives = 31/67 (46%) Frame = -3 Query: 260 LEVPRDVLPPEPQERVHVHVQPALRPRGVEGDAALVLVDAVGGLRDADLVEVRAEEIHGR 81 L +P +LPP V P L +GD + +++A+ G + ++ R+ +++ Sbjct: 193 LNLPNGILPPTSAGTNFVSAAPTLISSATKGDNRMFVIEAIAGGLNTNVAVRRSRQVYTV 252 Query: 80 GPRRTTA 60 R +A Sbjct: 253 SYERLSA 259
>POLR_TYMV (P10358) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1844 Score = 29.3 bits (64), Expect = 6.1 Identities = 23/79 (29%), Positives = 41/79 (51%) Frame = +3 Query: 168 SFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYLHIVQRRKPEPDETDRPLKKPT 347 S++ P S+ ++ +NS + G H++ +S PV+ ++QR P PD + + PT Sbjct: 208 SYNQP-SDAHSWLRINS-IRLGNHHLSVTILESWGPVHSLLIQRGTPPPDPSLQ--APPT 263 Query: 348 LLAIGVEGGFGEQEPEYDV 404 L+ + + QEP DV Sbjct: 264 LMTSDLFRSY--QEPRLDV 280
>DBP5_GIBZE (Q4HY71) ATP-dependent RNA helicase DBP5 (EC 3.6.1.-)| Length = 488 Score = 28.9 bits (63), Expect = 7.9 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +3 Query: 369 GGFGEQEPEYDVTYEIVILPEFESLPFPSVDLPEKVRLAVD 491 GG G QEPE+DV + L E+ PF S + + L D Sbjct: 45 GGSGLQEPEWDVEVSLSELQNNEATPFHSATTWQDLGLRED 85
>DEXB_STRPN (Q54796) Glucan 1,6-alpha-glucosidase (EC 3.2.1.70) (Dextran| glucosidase) (Exo-1,6-alpha-glucosidase) (Glucodextranase) Length = 535 Score = 28.9 bits (63), Expect = 7.9 Identities = 13/62 (20%), Positives = 30/62 (48%) Frame = +3 Query: 156 ECCVSFDTPRSEGGLYVDMNSFLGFGREHVAWNFEKSENPVYLHIVQRRKPEPDETDRPL 335 E C + D+P + ++ D + L AW +++ YLH +++P+ + + L Sbjct: 113 EACENTDSPERDYYIWRDEPNDLDSIFSGSAWEYDEKSGQYYLHFFSKKQPDLNWENEKL 172 Query: 336 KK 341 ++ Sbjct: 173 RQ 174
>3MGH_MYCLE (O05678) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 214 Score = 28.9 bits (63), Expect = 7.9 Identities = 20/65 (30%), Positives = 29/65 (44%) Frame = -3 Query: 266 RLLEVPRDVLPPEPQERVHVHVQPALRPRGVEGDAALVLVDAVGGLRDADLVEVRAEEIH 87 ++ V D L +P H + + RGV A +V V+A GG+ D + A H Sbjct: 8 KICAVSADQLVVDPVVAAHRLLGATITGRGV--CAIVVEVEAYGGVPDGPWPDAAAHSYH 65 Query: 86 GRGPR 72 GR R Sbjct: 66 GRNDR 70
>TERT_HUMAN (O14746) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase| catalytic subunit) (HEST2) (Telomerase-associated protein 2) (TP2) Length = 1132 Score = 28.9 bits (63), Expect = 7.9 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +2 Query: 224 GVREGARRVELREVGEPRVPPHRAAPEA 307 G+R+ +RV+LRE+ E V HR A A Sbjct: 588 GIRQHLKRVQLRELSEAEVRQHREARPA 615 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,380,379 Number of Sequences: 219361 Number of extensions: 1334970 Number of successful extensions: 5033 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4829 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5022 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
