ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl04b01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_550320.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2910 Score = 492 bits (248), Expect = e-136 Identities = 397/446 (89%), Gaps = 3/446 (0%) Strand = Plus / Plus Query: 57 ctccgccgtcgtccgccgcgggccgcggccatggatctcctccgcgcgaacctccacaag 116 |||||||| || ||| ||| | ||||||||||||||||||||||| || ||||||||||| Sbjct: 96 ctccgccgccgcccggcgccgcccgcggccatggatctcctccgctcgcacctccacaag 155 Query: 117 gtccgcatcccggagcccaccaaccgcatccacaaggacgagtgctgcgtctccttcgac 176 |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 156 gtccgcatcccggagcccggcagccgcatccacaaggacgagtgctgcgtctccttcgac 215 Query: 177 accccgaggtcggagggcgggctgtacgtggacatgaactcgttcctggggttcgggagg 236 ||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||| Sbjct: 216 accccgaggtcggagggtgggctgtacgtcgacatgacctcgttcctggggttcgggagg 275 Query: 237 gagcacgtcgcgtggaacttcgagaagtcggagaaccccgtgtacctccacatcgtgcag 296 |||||||| |||||||||| ||||||| | |||||||||||||||||||||||||||| Sbjct: 276 gagcacgtggcgtggaactacgagaagagtgggaaccccgtgtacctccacatcgtgcag 335 Query: 297 cgccggaagccggagcc---ggacgagacagatcgcccgctgaagaagccaaccctgctc 353 ||||||||||||||||| |||||| | |||||||||||||||||||| || || ||| Sbjct: 336 cgccggaagccggagcccgacgacgaggcggatcgcccgctgaagaagcccacgctactc 395 Query: 354 gccatcggcgtggagggaggttttggtgaacaagaacctgaatacgatgtgacttatgaa 413 |||||||| |||||||||||||| ||| |||||||| |||||||||| | ||| |||| Sbjct: 396 gccatcggagtggagggaggtttcactgatcaagaacccgaatacgatgaggcttttgaa 455 Query: 414 atcgttattttgcctgaattcgaatctctcccgtttccatctgttgacttgccagagaag 473 || ||||| ||||||||||| |||||||| |||||||| ||||||||||||||||| Sbjct: 456 attgttatcttgcctgaatttacttctctcccttttccatcaattgacttgccagagaag 515 Query: 474 gttaggcttgccgttgataaagttat 499 |||||| |||| ||||| |||||||| Sbjct: 516 gttaggattgcagttgacaaagttat 541 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 ctcgtcgcctcgccgtctcc 25 |||||||||||||||||||| Sbjct: 40 ctcgtcgcctcgccgtctcc 59
>dbj|AK103230.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123D13, full insert sequence Length = 2910 Score = 492 bits (248), Expect = e-136 Identities = 397/446 (89%), Gaps = 3/446 (0%) Strand = Plus / Plus Query: 57 ctccgccgtcgtccgccgcgggccgcggccatggatctcctccgcgcgaacctccacaag 116 |||||||| || ||| ||| | ||||||||||||||||||||||| || ||||||||||| Sbjct: 96 ctccgccgccgcccggcgccgcccgcggccatggatctcctccgctcgcacctccacaag 155 Query: 117 gtccgcatcccggagcccaccaaccgcatccacaaggacgagtgctgcgtctccttcgac 176 |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 156 gtccgcatcccggagcccggcagccgcatccacaaggacgagtgctgcgtctccttcgac 215 Query: 177 accccgaggtcggagggcgggctgtacgtggacatgaactcgttcctggggttcgggagg 236 ||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||| Sbjct: 216 accccgaggtcggagggtgggctgtacgtcgacatgacctcgttcctggggttcgggagg 275 Query: 237 gagcacgtcgcgtggaacttcgagaagtcggagaaccccgtgtacctccacatcgtgcag 296 |||||||| |||||||||| ||||||| | |||||||||||||||||||||||||||| Sbjct: 276 gagcacgtggcgtggaactacgagaagagtgggaaccccgtgtacctccacatcgtgcag 335 Query: 297 cgccggaagccggagcc---ggacgagacagatcgcccgctgaagaagccaaccctgctc 353 ||||||||||||||||| |||||| | |||||||||||||||||||| || || ||| Sbjct: 336 cgccggaagccggagcccgacgacgaggcggatcgcccgctgaagaagcccacgctactc 395 Query: 354 gccatcggcgtggagggaggttttggtgaacaagaacctgaatacgatgtgacttatgaa 413 |||||||| |||||||||||||| ||| |||||||| |||||||||| | ||| |||| Sbjct: 396 gccatcggagtggagggaggtttcactgatcaagaacccgaatacgatgaggcttttgaa 455 Query: 414 atcgttattttgcctgaattcgaatctctcccgtttccatctgttgacttgccagagaag 473 || ||||| ||||||||||| |||||||| |||||||| ||||||||||||||||| Sbjct: 456 attgttatcttgcctgaatttacttctctcccttttccatcaattgacttgccagagaag 515 Query: 474 gttaggcttgccgttgataaagttat 499 |||||| |||| ||||| |||||||| Sbjct: 516 gttaggattgcagttgacaaagttat 541 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 ctcgtcgcctcgccgtctcc 25 |||||||||||||||||||| Sbjct: 40 ctcgtcgcctcgccgtctcc 59
>gb|AY105079.1| Zea mays PCO107820 mRNA sequence Length = 2648 Score = 412 bits (208), Expect = e-112 Identities = 373/428 (87%) Strand = Plus / Plus Query: 70 cgccgcgggccgcggccatggatctcctccgcgcgaacctccacaaggtccgcatcccgg 129 |||||| | |||||| |||||||||||| ||| | | |||||||||||||| ||||| | Sbjct: 38 cgccgccgcccgcggacatggatctccttcgctctcatctccacaaggtccggatccccg 97 Query: 130 agcccaccaaccgcatccacaaggacgagtgctgcgtctccttcgacaccccgaggtcgg 189 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct: 98 agccaaccaaccgcatccacaaggacgagtgctgcgtctccttcgacactccgaggtcag 157 Query: 190 agggcgggctgtacgtggacatgaactcgttcctggggttcgggagggagcacgtcgcgt 249 |||| || ||||||||||||||| ||||||||||||||||||||||||| |||| | || Sbjct: 158 agggaggcctgtacgtggacatggtctcgttcctggggttcgggagggagtacgtggagt 217 Query: 250 ggaacttcgagaagtcggagaaccccgtgtacctccacatcgtgcagcgccggaagccgg 309 |||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||| Sbjct: 218 ggaacttcgagaagacggggaaccccgtgtacctccacatcgttcagcgccggaagccgg 277 Query: 310 agccggacgagacagatcgcccgctgaagaagccaaccctgctcgccatcggcgtggagg 369 |||| |||||| | ||||||||||| |||||||| ||||| ||||| || || ||||| | Sbjct: 278 agcccgacgaggcggatcgcccgcttaagaagcccaccctcctcgctataggtgtggaag 337 Query: 370 gaggttttggtgaacaagaacctgaatacgatgtgacttatgaaatcgttattttgcctg 429 ||||||||||||| |||||||| ||||| |||| |||| |||||| || || || |||| Sbjct: 338 gaggttttggtgatcaagaaccagaatatgatgaaacttttgaaatagtcatcttacctg 397 Query: 430 aattcgaatctctcccgtttccatctgttgacttgccagagaaggttaggcttgccgttg 489 | || | ||| || ||||| || ||||| ||||||||||||||||||||||| |||| Sbjct: 398 attttatttgtcttccatttccgtcagttgatttgccagagaaggttaggcttgcggttg 457 Query: 490 ataaagtt 497 |||||||| Sbjct: 458 ataaagtt 465
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 216 bits (109), Expect = 5e-53 Identities = 165/183 (90%), Gaps = 3/183 (1%) Strand = Plus / Plus Query: 182 gaggtcggagggcgggctgtacgtggacatgaactcgttcctggggttcgggagggagca 241 |||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct: 3985964 gaggtcggagggtgggctgtacgtcgacatgacctcgttcctggggttcgggagggagca 3986023 Query: 242 cgtcgcgtggaacttcgagaagtcggagaaccccgtgtacctccacatcgtgcagcgccg 301 ||| |||||||||| ||||||| | ||||||||||||||||||||||||||||||||| Sbjct: 3986024 cgtggcgtggaactacgagaagagtgggaaccccgtgtacctccacatcgtgcagcgccg 3986083 Query: 302 gaagccggagcc---ggacgagacagatcgcccgctgaagaagccaaccctgctcgccat 358 |||||||||||| |||||| | |||||||||||||||||||| || || |||||||| Sbjct: 3986084 gaagccggagcccgacgacgaggcggatcgcccgctgaagaagcccacgctactcgccat 3986143 Query: 359 cgg 361 ||| Sbjct: 3986144 cgg 3986146 Score = 170 bits (86), Expect = 3e-39 Identities = 116/126 (92%) Strand = Plus / Plus Query: 57 ctccgccgtcgtccgccgcgggccgcggccatggatctcctccgcgcgaacctccacaag 116 |||||||| || ||| ||| | ||||||||||||||||||||||| || ||||||||||| Sbjct: 3985741 ctccgccgccgcccggcgccgcccgcggccatggatctcctccgctcgcacctccacaag 3985800 Query: 117 gtccgcatcccggagcccaccaaccgcatccacaaggacgagtgctgcgtctccttcgac 176 |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 3985801 gtccgcatcccggagcccggcagccgcatccacaaggacgagtgctgcgtctccttcgac 3985860 Query: 177 accccg 182 |||||| Sbjct: 3985861 accccg 3985866 Score = 89.7 bits (45), Expect = 8e-15 Identities = 96/113 (84%) Strand = Plus / Plus Query: 363 gtggagggaggttttggtgaacaagaacctgaatacgatgtgacttatgaaatcgttatt 422 |||||||||||||| ||| |||||||| |||||||||| | ||| |||||| ||||| Sbjct: 3986670 gtggagggaggtttcactgatcaagaacccgaatacgatgaggcttttgaaattgttatc 3986729 Query: 423 ttgcctgaattcgaatctctcccgtttccatctgttgacttgccagagaaggt 475 ||||||||||| |||||||| |||||||| ||||||||||||||||||| Sbjct: 3986730 ttgcctgaatttacttctctcccttttccatcaattgacttgccagagaaggt 3986782 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 ctcgtcgcctcgccgtctcc 25 |||||||||||||||||||| Sbjct: 3985685 ctcgtcgcctcgccgtctcc 3985704
>dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0013F10 Length = 163095 Score = 216 bits (109), Expect = 5e-53 Identities = 165/183 (90%), Gaps = 3/183 (1%) Strand = Plus / Plus Query: 182 gaggtcggagggcgggctgtacgtggacatgaactcgttcctggggttcgggagggagca 241 |||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct: 107868 gaggtcggagggtgggctgtacgtcgacatgacctcgttcctggggttcgggagggagca 107927 Query: 242 cgtcgcgtggaacttcgagaagtcggagaaccccgtgtacctccacatcgtgcagcgccg 301 ||| |||||||||| ||||||| | ||||||||||||||||||||||||||||||||| Sbjct: 107928 cgtggcgtggaactacgagaagagtgggaaccccgtgtacctccacatcgtgcagcgccg 107987 Query: 302 gaagccggagcc---ggacgagacagatcgcccgctgaagaagccaaccctgctcgccat 358 |||||||||||| |||||| | |||||||||||||||||||| || || |||||||| Sbjct: 107988 gaagccggagcccgacgacgaggcggatcgcccgctgaagaagcccacgctactcgccat 108047 Query: 359 cgg 361 ||| Sbjct: 108048 cgg 108050 Score = 170 bits (86), Expect = 3e-39 Identities = 116/126 (92%) Strand = Plus / Plus Query: 57 ctccgccgtcgtccgccgcgggccgcggccatggatctcctccgcgcgaacctccacaag 116 |||||||| || ||| ||| | ||||||||||||||||||||||| || ||||||||||| Sbjct: 107645 ctccgccgccgcccggcgccgcccgcggccatggatctcctccgctcgcacctccacaag 107704 Query: 117 gtccgcatcccggagcccaccaaccgcatccacaaggacgagtgctgcgtctccttcgac 176 |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 107705 gtccgcatcccggagcccggcagccgcatccacaaggacgagtgctgcgtctccttcgac 107764 Query: 177 accccg 182 |||||| Sbjct: 107765 accccg 107770 Score = 89.7 bits (45), Expect = 8e-15 Identities = 96/113 (84%) Strand = Plus / Plus Query: 363 gtggagggaggttttggtgaacaagaacctgaatacgatgtgacttatgaaatcgttatt 422 |||||||||||||| ||| |||||||| |||||||||| | ||| |||||| ||||| Sbjct: 108574 gtggagggaggtttcactgatcaagaacccgaatacgatgaggcttttgaaattgttatc 108633 Query: 423 ttgcctgaattcgaatctctcccgtttccatctgttgacttgccagagaaggt 475 ||||||||||| |||||||| |||||||| ||||||||||||||||||| Sbjct: 108634 ttgcctgaatttacttctctcccttttccatcaattgacttgccagagaaggt 108686 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 ctcgtcgcctcgccgtctcc 25 |||||||||||||||||||| Sbjct: 107589 ctcgtcgcctcgccgtctcc 107608
>emb|AL606642.3|OSJN00073 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027H06, complete sequence Length = 143730 Score = 133 bits (67), Expect = 6e-28 Identities = 91/99 (91%) Strand = Plus / Minus Query: 84 gccatggatctcctccgcgcgaacctccacaaggtccgcatcccggagcccaccaaccgc 143 |||||||||||||||||| || |||||||||||||| |||||| ||||||| || |||| Sbjct: 26601 gccatggatctcctccgctcgcacctccacaaggtctgcatcctggagcccggcagccgc 26542 Query: 144 atccacaaggacgagtgctgcgtctccttcgacaccccg 182 ||||||||||||||||||| ||||||||||||||||||| Sbjct: 26541 atccacaaggacgagtgcttcgtctccttcgacaccccg 26503 Score = 69.9 bits (35), Expect = 8e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 269 gaaccccgtgtacctccacatcgtgcagcgccggaagccggagccggacga 319 |||||||||||||||||||||| |||||||||| ||||| ||||| ||||| Sbjct: 26355 gaaccccgtgtacctccacatcatgcagcgccgaaagccagagcccgacga 26305 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 186 tcggagggcgggctgtacgtggacatgaactcgttcctggggttcgggagg 236 |||||||| |||||||| || ||||||| ||||||||| |||||||||||| Sbjct: 26405 tcggagggtgggctgtatgtcgacatgacctcgttccttgggttcgggagg 26355 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 4 atctcgtcgcctcgccgtctcc 25 |||||||||||||||||||||| Sbjct: 26689 atctcgtcgcctcgccgtctcc 26668
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 133 bits (67), Expect = 6e-28 Identities = 91/99 (91%) Strand = Plus / Minus Query: 84 gccatggatctcctccgcgcgaacctccacaaggtccgcatcccggagcccaccaaccgc 143 |||||||||||||||||| || |||||||||||||| |||||| ||||||| || |||| Sbjct: 495633 gccatggatctcctccgctcgcacctccacaaggtctgcatcctggagcccggcagccgc 495574 Query: 144 atccacaaggacgagtgctgcgtctccttcgacaccccg 182 ||||||||||||||||||| ||||||||||||||||||| Sbjct: 495573 atccacaaggacgagtgcttcgtctccttcgacaccccg 495535 Score = 69.9 bits (35), Expect = 8e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 269 gaaccccgtgtacctccacatcgtgcagcgccggaagccggagccggacga 319 |||||||||||||||||||||| |||||||||| ||||| ||||| ||||| Sbjct: 495387 gaaccccgtgtacctccacatcatgcagcgccgaaagccagagcccgacga 495337 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 186 tcggagggcgggctgtacgtggacatgaactcgttcctggggttcgggagg 236 |||||||| |||||||| || ||||||| ||||||||| |||||||||||| Sbjct: 495437 tcggagggtgggctgtatgtcgacatgacctcgttccttgggttcgggagg 495387 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 4 atctcgtcgcctcgccgtctcc 25 |||||||||||||||||||||| Sbjct: 495721 atctcgtcgcctcgccgtctcc 495700 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 tcctggggttcgggagggagc 240 ||||||||||||||||||||| Sbjct: 26258170 tcctggggttcgggagggagc 26258150
>ref|XM_470996.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1710 Score = 101 bits (51), Expect = 2e-18 Identities = 69/75 (92%) Strand = Plus / Minus Query: 108 ctccacaaggtccgcatcccggagcccaccaaccgcatccacaaggacgagtgctgcgtc 167 |||||||||||| |||||| ||||||| || ||||||||||||||||||||||| |||| Sbjct: 1359 ctccacaaggtctgcatcctggagcccggcagccgcatccacaaggacgagtgcttcgtc 1300 Query: 168 tccttcgacaccccg 182 ||||||||||||||| Sbjct: 1299 tccttcgacaccccg 1285
>emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence Length = 141545 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 tcctggggttcgggagggagc 240 ||||||||||||||||||||| Sbjct: 34747 tcctggggttcgggagggagc 34727
>gb|AF165214.1|AF165214 Bacteriophage D3, complete genome Length = 56425 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 gaactcgttcctggggttcgg 232 ||||||||||||||||||||| Sbjct: 50006 gaactcgttcctggggttcgg 50026
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 368 gggaggttttggtgaacaaga 388 ||||||||||||||||||||| Sbjct: 2425127 gggaggttttggtgaacaaga 2425107
>dbj|AK121934.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107A05, full insert sequence Length = 1145 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 tcctggggttcgggagggagc 240 ||||||||||||||||||||| Sbjct: 73 tcctggggttcgggagggagc 53
>ref|NM_112954.2| Arabidopsis thaliana UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14); ubiquitin-specific protease AT3G20630 (UBP14) mRNA, complete cds Length = 2394 Score = 40.1 bits (20), Expect = 6.8 Identities = 38/44 (86%) Strand = Plus / Plus Query: 441 ctcccgtttccatctgttgacttgccagagaaggttaggcttgc 484 ||||||||||| |||||||| | ||||||||||| ||| |||| Sbjct: 349 ctcccgtttccttctgttgagctaccagagaaggtgaggattgc 392
>ref|NM_197601.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0015I11.19), mRNA Length = 999 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 tgctgcgtctccttcgacaccccg 182 ||||||||| |||||||||||||| Sbjct: 478 tgctgcgtcgccttcgacaccccg 501
>ref|XM_469431.1| Oryza sativa (japonica cultivar-group), mRNA Length = 600 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 cgtcgtccgccgcgggccgc 82 |||||||||||||||||||| Sbjct: 529 cgtcgtccgccgcgggccgc 510
>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08 map R2847, complete sequence Length = 100918 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 cgtcgtccgccgcgggccgc 82 |||||||||||||||||||| Sbjct: 65570 cgtcgtccgccgcgggccgc 65589
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 gtcgtccgccgcgggccgcg 83 |||||||||||||||||||| Sbjct: 270923 gtcgtccgccgcgggccgcg 270942
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 cgtcgtccgccgcgggccgc 82 |||||||||||||||||||| Sbjct: 27929842 cgtcgtccgccgcgggccgc 27929861
>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete sequence Length = 133889 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 cgtcgtccgccgcgggccgc 82 |||||||||||||||||||| Sbjct: 95184 cgtcgtccgccgcgggccgc 95165
>gb|AC101737.6| Mus musculus chromosome 1, clone RP23-471L1, complete sequence Length = 235405 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 21 tctccccacgcccccaaaacccta 44 ||||||||| |||||||||||||| Sbjct: 96709 tctccccacccccccaaaacccta 96732
>ref|XM_387351.1| Gibberella zeae PH-1 chromosome 4 conserved hypothetical protein (FG07175.1) partial mRNA Length = 3315 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 aacttcgagaagtcggagaacccc 275 |||||||||||||||||| ||||| Sbjct: 2785 aacttcgagaagtcggaggacccc 2808
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 gtcgtccgccgcgggccgcg 83 |||||||||||||||||||| Sbjct: 1596724 gtcgtccgccgcgggccgcg 1596743
>gb|AY140096.1| Arabidopsis thaliana ubiquitin-specific protease 14 (UBP14), putative (At3g20625:At3g20630) mRNA, complete cds Length = 2664 Score = 40.1 bits (20), Expect = 6.8 Identities = 38/44 (86%) Strand = Plus / Plus Query: 441 ctcccgtttccatctgttgacttgccagagaaggttaggcttgc 484 ||||||||||| |||||||| | ||||||||||| ||| |||| Sbjct: 411 ctcccgtttccttctgttgagctaccagagaaggtgaggattgc 454
>emb|CR861453.1| Pongo pygmaeus mRNA; cDNA DKFZp459D032 (from clone DKFZp459D032) Length = 3180 Score = 40.1 bits (20), Expect = 6.8 Identities = 44/52 (84%) Strand = Plus / Plus Query: 145 tccacaaggacgagtgctgcgtctccttcgacaccccgaggtcggagggcgg 196 ||||||| ||||||||| | ||||||||||||| ||| ||| |||||||| Sbjct: 107 tccacaaagacgagtgcgccttctccttcgacacgccggagtctgagggcgg 158
>gb|AF003139.2| Caenorhabditis elegans cosmid F53G12, complete sequence Length = 41553 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 tctcgtcgcctcgccgtctc 24 |||||||||||||||||||| Sbjct: 674 tctcgtcgcctcgccgtctc 655
>gb|AC011407.6| Homo sapiens chromosome 5 clone CTB-54I1, complete sequence Length = 240957 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 cccgctgaagaagccaaccc 348 |||||||||||||||||||| Sbjct: 134920 cccgctgaagaagccaaccc 134901
>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete sequence Length = 138824 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 tgctgcgtctccttcgacaccccg 182 ||||||||| |||||||||||||| Sbjct: 111528 tgctgcgtcgccttcgacaccccg 111551
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 tgctgcgtctccttcgacaccccg 182 ||||||||| |||||||||||||| Sbjct: 20710076 tgctgcgtcgccttcgacaccccg 20710099
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 cgtcgtccgccgcgggccgc 82 |||||||||||||||||||| Sbjct: 28021166 cgtcgtccgccgcgggccgc 28021185
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 64 gtcgtccgccgcgggccgcggcca 87 |||||||||||||||| ||||||| Sbjct: 1052597 gtcgtccgccgcgggcggcggcca 1052620
>gb|AC023471.4|AC023471 Homo sapiens chromosome 3 clone RP11-126L9 map 3p, complete sequence Length = 192973 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 ctgaagaagccaaccctgct 352 |||||||||||||||||||| Sbjct: 118376 ctgaagaagccaaccctgct 118395
>gb|AC018818.5|AC018818 Homo sapiens chromosome 3 clone RP11-266E23 map 3p, complete sequence Length = 156335 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 ctgaagaagccaaccctgct 352 |||||||||||||||||||| Sbjct: 38220 ctgaagaagccaaccctgct 38239
>gb|AF302664.1|AF302664 Arabidopsis thaliana ubiquitin-specific protease 14 (UBP14) mRNA, complete cds Length = 2394 Score = 40.1 bits (20), Expect = 6.8 Identities = 38/44 (86%) Strand = Plus / Plus Query: 441 ctcccgtttccatctgttgacttgccagagaaggttaggcttgc 484 ||||||||||| |||||||| | ||||||||||| ||| |||| Sbjct: 349 ctcccgtttccttctgttgagctaccagagaaggtgaggattgc 392
>ref|NM_208320.1| Eremothecium gossypii ABR021Wp (ABR021W), mRNA Length = 3255 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 catcccggagcccaccaacc 141 |||||||||||||||||||| Sbjct: 603 catcccggagcccaccaacc 622
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 tgctgcgtctccttcgacaccccg 182 ||||||||| |||||||||||||| Sbjct: 20721348 tgctgcgtcgccttcgacaccccg 20721371
>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II, complete sequence Length = 867699 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 catcccggagcccaccaacc 141 |||||||||||||||||||| Sbjct: 431791 catcccggagcccaccaacc 431810
>gb|AC027128.5| Homo sapiens chromosome 3 clone RP11-627C1 map 3p, complete sequence Length = 175773 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ctgaagaagccaaccctgct 352 |||||||||||||||||||| Sbjct: 35177 ctgaagaagccaaccctgct 35158
>gb|AC018495.5| Homo sapiens chromosome 3 clone RP11-193K15 map 3p, complete sequence Length = 173592 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ctgaagaagccaaccctgct 352 |||||||||||||||||||| Sbjct: 131876 ctgaagaagccaaccctgct 131857 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,815,734 Number of Sequences: 3902068 Number of extensions: 2815734 Number of successful extensions: 50529 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50134 Number of HSP's gapped (non-prelim): 387 length of query: 499 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 477 effective length of database: 17,147,199,772 effective search space: 8179214291244 effective search space used: 8179214291244 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
