ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl04a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IPHP_NOSCO (Q05918) Tyrosine-protein phosphatase precursor (EC 3... 33 0.33
2DNLI_THEVO (Q979A1) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleo... 32 0.74

>IPHP_NOSCO (Q05918) Tyrosine-protein phosphatase precursor (EC 3.1.3.48)|
          Length = 294

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 297 AMARDAAVLFQSRRYAECAEVLAQLLLKKEGDPK--VLHNMAIAESFVDGCP 446
           A  +D AVLF      +   ++A LLL   G PK  ++HN AI+  +++G P
Sbjct: 171 AAQQDGAVLFHCTAGKDRTGIIAGLLLDLAGVPKAEIVHNYAISAHYLEGQP 222



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>DNLI_THEVO (Q979A1) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase|
           [ATP])
          Length = 588

 Score = 32.0 bits (71), Expect = 0.74
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 178 ERGCDTRTPDSRADAANWSTGGRVWSWGGLARVWTRWRWDT 56
           E GC+     S AD + +  G R W W  L R +    WDT
Sbjct: 396 EDGCEGLVAKSMADDSYYKAGARGWLWIKLKRDYQAQLWDT 436


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,570,131
Number of Sequences: 219361
Number of extensions: 565553
Number of successful extensions: 1760
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1759
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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