ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl04a12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_450107.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3007 Score = 228 bits (115), Expect = 1e-56 Identities = 163/179 (91%) Strand = Plus / Plus Query: 267 gaggaggacgggacgctctccgcgacggcagctatggcgagggacgccgccgtgctgttc 326 |||||||| |||| |||||||| ||||| |||||||| || |||||||||||||||||| Sbjct: 265 gaggaggaagggatgctctccgtcacggccgctatggccagagacgccgccgtgctgttc 324 Query: 327 cagagccgccggtacgccgagtgcgccgaggtgctcgcgcagctcctgctcaagaaggag 386 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 325 cagagccgccgctacgccgactgcgccgaggtgctcgcgcagctcctgctcaagaaggag 384 Query: 387 ggtgaccccaaggtccttcataatatggccatcgcagaatcgtttgtggatggttgtcc 445 || ||||||||||||||||| |||||||| || |||||||| || ||||||||||||| Sbjct: 385 ggcgaccccaaggtccttcacaatatggctattgcagaatctttcttggatggttgtcc 443
>dbj|AK103665.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033135J15, full insert sequence Length = 3007 Score = 228 bits (115), Expect = 1e-56 Identities = 163/179 (91%) Strand = Plus / Plus Query: 267 gaggaggacgggacgctctccgcgacggcagctatggcgagggacgccgccgtgctgttc 326 |||||||| |||| |||||||| ||||| |||||||| || |||||||||||||||||| Sbjct: 265 gaggaggaagggatgctctccgtcacggccgctatggccagagacgccgccgtgctgttc 324 Query: 327 cagagccgccggtacgccgagtgcgccgaggtgctcgcgcagctcctgctcaagaaggag 386 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 325 cagagccgccgctacgccgactgcgccgaggtgctcgcgcagctcctgctcaagaaggag 384 Query: 387 ggtgaccccaaggtccttcataatatggccatcgcagaatcgtttgtggatggttgtcc 445 || ||||||||||||||||| |||||||| || |||||||| || ||||||||||||| Sbjct: 385 ggcgaccccaaggtccttcacaatatggctattgcagaatctttcttggatggttgtcc 443
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 186 bits (94), Expect = 4e-44 Identities = 124/134 (92%) Strand = Plus / Plus Query: 267 gaggaggacgggacgctctccgcgacggcagctatggcgagggacgccgccgtgctgttc 326 |||||||| |||| |||||||| ||||| |||||||| || |||||||||||||||||| Sbjct: 1727075 gaggaggaagggatgctctccgtcacggccgctatggccagagacgccgccgtgctgttc 1727134 Query: 327 cagagccgccggtacgccgagtgcgccgaggtgctcgcgcagctcctgctcaagaaggag 386 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1727135 cagagccgccgctacgccgactgcgccgaggtgctcgcgcagctcctgctcaagaaggag 1727194 Query: 387 ggtgaccccaaggt 400 || ||||||||||| Sbjct: 1727195 ggcgaccccaaggt 1727208 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 397 aggtccttcataatatggccatcgcagaatcgtttgtggatggttgtcc 445 |||||||||| |||||||| || |||||||| || ||||||||||||| Sbjct: 1727895 aggtccttcacaatatggctattgcagaatctttcttggatggttgtcc 1727943
>dbj|AP006062.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0415D04 Length = 176627 Score = 186 bits (94), Expect = 4e-44 Identities = 124/134 (92%) Strand = Plus / Plus Query: 267 gaggaggacgggacgctctccgcgacggcagctatggcgagggacgccgccgtgctgttc 326 |||||||| |||| |||||||| ||||| |||||||| || |||||||||||||||||| Sbjct: 113647 gaggaggaagggatgctctccgtcacggccgctatggccagagacgccgccgtgctgttc 113706 Query: 327 cagagccgccggtacgccgagtgcgccgaggtgctcgcgcagctcctgctcaagaaggag 386 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 113707 cagagccgccgctacgccgactgcgccgaggtgctcgcgcagctcctgctcaagaaggag 113766 Query: 387 ggtgaccccaaggt 400 || ||||||||||| Sbjct: 113767 ggcgaccccaaggt 113780 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Plus Query: 397 aggtccttcataatatggccatcgcagaatcgtttgtggatggttgtcc 445 |||||||||| |||||||| || |||||||| || ||||||||||||| Sbjct: 114467 aggtccttcacaatatggctattgcagaatctttcttggatggttgtcc 114515
>ref|NG_002690.1| Homo sapiens Prader-Willi/Angelman syndrome region (PWSAS@) on chromosome 15 Length = 755217 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 227 gccgaaggaggcgccgccgccc 248 |||||||||||||||||||||| Sbjct: 657862 gccgaaggaggcgccgccgccc 657883
>gb|BC002582.2| Homo sapiens ubiquitin protein ligase E3A (human papilloma virus E6-associated protein, Angelman syndrome), transcript variant 3, mRNA (cDNA clone MGC:2086 IMAGE:3160225), complete cds Length = 3331 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 227 gccgaaggaggcgccgccgccc 248 |||||||||||||||||||||| Sbjct: 211 gccgaaggaggcgccgccgccc 190
>gb|AC124997.4| Homo sapiens chromosome 15, clone RP11-466L14, complete sequence Length = 179810 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 227 gccgaaggaggcgccgccgccc 248 |||||||||||||||||||||| Sbjct: 82455 gccgaaggaggcgccgccgccc 82476
>ref|NM_130839.1| Homo sapiens ubiquitin protein ligase E3A (human papilloma virus E6-associated protein, Angelman syndrome) (UBE3A), transcript variant 3, mRNA Length = 5164 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 227 gccgaaggaggcgccgccgccc 248 |||||||||||||||||||||| Sbjct: 211 gccgaaggaggcgccgccgccc 190
>dbj|AK056239.1| Homo sapiens cDNA FLJ31677 fis, clone NT2RI2005116, highly similar to UBIQUITIN-PROTEIN LIGASE E3A (EC 6.3.2.-) Length = 1909 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 227 gccgaaggaggcgccgccgccc 248 |||||||||||||||||||||| Sbjct: 226 gccgaaggaggcgccgccgccc 205
>gb|DQ341315.2| Ascochyta lentis strain ATCC 96419 MAT1-2-1 (MAT1-2-1) gene, complete cds Length = 3638 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 106 aaaccctaccgccagtgctccagttc 131 |||||||||||||||||||| ||||| Sbjct: 3133 aaaccctaccgccagtgctcgagttc 3108
>gb|AC124311.7| Homo sapiens chromosome 15, clone RP11-479F18, complete sequence Length = 142745 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 227 gccgaaggaggcgccgccgccc 248 |||||||||||||||||||||| Sbjct: 8134 gccgaaggaggcgccgccgccc 8155
>gb|AF009339.1|HSUBE6AP1 Homo sapiens E6-AP ubiquitin-protein ligase (UBE3A) exon 1 sequence Length = 539 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 227 gccgaaggaggcgccgccgccc 248 |||||||||||||||||||||| Sbjct: 257 gccgaaggaggcgccgccgccc 236
>gb|AC004600.2|AC004600 Homo sapiens Chromosome 15q11-q13 PAC clone pDJ373b1 containing Angelman Syndrome gene (UBE3A), complete sequence Length = 133863 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 227 gccgaaggaggcgccgccgccc 248 |||||||||||||||||||||| Sbjct: 111398 gccgaaggaggcgccgccgccc 111419
>gb|AC004259.1|AC004259 Human Chromosome 15q11-q13 PAC clone pDJ14i12 containing Angelman Syndrome gene (UBE3A), complete sequence Length = 118684 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 227 gccgaaggaggcgccgccgccc 248 |||||||||||||||||||||| Sbjct: 90541 gccgaaggaggcgccgccgccc 90562
>ref|NM_185464.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1533 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 gcggcgccgaaggaggcgccg 242 ||||||||||||||||||||| Sbjct: 148 gcggcgccgaaggaggcgccg 128
>gb|AC137618.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0090H02, complete sequence Length = 135231 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 72 cgcgtccaaaccctagctagc 92 ||||||||||||||||||||| Sbjct: 116379 cgcgtccaaaccctagctagc 116359
>gb|AC111275.4| Rattus norvegicus 4 BAC CH230-49L22 (Children's Hospital Oakland Research Institute) complete sequence Length = 227595 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 238 cgccgccgccccagccacagc 258 ||||||||||||||||||||| Sbjct: 207217 cgccgccgccccagccacagc 207237
>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07, complete sequence Length = 159932 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 72 cgcgtccaaaccctagctagc 92 ||||||||||||||||||||| Sbjct: 18834 cgcgtccaaaccctagctagc 18814
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 349 gcgccgaggtgctcgcgcagc 369 ||||||||||||||||||||| Sbjct: 4904911 gcgccgaggtgctcgcgcagc 4904891
>gb|DQ249342.1| Streptomyces hygroscopicus subsp. duamyceticus strain JCM4427 unknown polyketide biosynthetic gene cluster, partial sequence; and AHBA biosynthesis gene cluster, complete sequence Length = 55488 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 343 ccgagtgcgccgaggtgctcg 363 ||||||||||||||||||||| Sbjct: 42350 ccgagtgcgccgaggtgctcg 42370
>gb|AC112030.4| Rattus norvegicus 4 BAC CH230-100K8 (Children's Hospital Oakland Research Institute) complete sequence Length = 237374 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 238 cgccgccgccccagccacagc 258 ||||||||||||||||||||| Sbjct: 17476 cgccgccgccccagccacagc 17496
>gb|AC093620.3| Homo sapiens BAC clone RP13-901C16 from 7, complete sequence Length = 71183 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 ggaggcgccgccgccccagcc 253 ||||||||||||||||||||| Sbjct: 42810 ggaggcgccgccgccccagcc 42830
>gb|AF506522.2| Streptomyces hygroscopicus AHBA biosynthetic gene cluster, partial sequence Length = 22131 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 343 ccgagtgcgccgaggtgctcg 363 ||||||||||||||||||||| Sbjct: 18641 ccgagtgcgccgaggtgctcg 18661
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 221 cgcggcgccgaaggaggcgcc 241 ||||||||||||||||||||| Sbjct: 42186 cgcggcgccgaaggaggcgcc 42206
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 221 cgcggcgccgaaggaggcgcc 241 ||||||||||||||||||||| Sbjct: 298873 cgcggcgccgaaggaggcgcc 298893
>gb|AC092562.4| Papio hamadryas BAC RP41-285I13 (Rosewell Park Cancer Institute BAC Library) complete sequence Length = 183586 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 228 ccgaaggaggcgccgccgccc 248 ||||||||||||||||||||| Sbjct: 130835 ccgaaggaggcgccgccgccc 130815
>ref|XM_938007.1| PREDICTED: Homo sapiens microtubule associated serine/threonine kinase 3 (MAST3), mRNA Length = 5887 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 214 tggagcccgcggcgccgaaggaggc 238 ||||||||||||||||| ||||||| Sbjct: 38 tggagcccgcggcgccgcaggaggc 14
>ref|XM_038150.5| PREDICTED: Homo sapiens microtubule associated serine/threonine kinase 3 (MAST3), mRNA Length = 5890 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 214 tggagcccgcggcgccgaaggaggc 238 ||||||||||||||||| ||||||| Sbjct: 38 tggagcccgcggcgccgcaggaggc 14
>gb|AC020904.7| Homo sapiens chromosome 19 clone CTB-52I2, complete sequence Length = 148824 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 214 tggagcccgcggcgccgaaggaggc 238 ||||||||||||||||| ||||||| Sbjct: 143699 tggagcccgcggcgccgcaggaggc 143675
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 gcggcgccgaaggaggcgccg 242 ||||||||||||||||||||| Sbjct: 1376764 gcggcgccgaaggaggcgccg 1376744
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 72 cgcgtccaaaccctagctagc 92 ||||||||||||||||||||| Sbjct: 17489029 cgcgtccaaaccctagctagc 17489009
>ref|NM_021266.2| Rattus norvegicus frizzled homolog 1 (Drosophila) (Fzd1), mRNA Length = 4187 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 238 cgccgccgccccagccacagc 258 ||||||||||||||||||||| Sbjct: 666 cgccgccgccccagccacagc 686
>dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0425F02 Length = 176979 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 gcggcgccgaaggaggcgccg 242 ||||||||||||||||||||| Sbjct: 85303 gcggcgccgaaggaggcgccg 85283
>dbj|AK108334.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-A04, full insert sequence Length = 933 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 72 cgcgtccaaaccctagctagc 92 ||||||||||||||||||||| Sbjct: 39 cgcgtccaaaccctagctagc 59
>gb|AC005793.1|AC005793 Homo sapiens chromosome 19, cosmid F23522, complete sequence Length = 38968 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 214 tggagcccgcggcgccgaaggaggc 238 ||||||||||||||||| ||||||| Sbjct: 1051 tggagcccgcggcgccgcaggaggc 1027
>gb|L02529.1|RATFRZZH Rattus norvegicus Drosophila polarity gene (frizzled) homologue mRNA, complete cds Length = 4540 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 238 cgccgccgccccagccacagc 258 ||||||||||||||||||||| Sbjct: 1019 cgccgccgccccagccacagc 1039
>dbj|AB011133.1| Homo sapiens mRNA for KIAA0561 protein, partial cds Length = 5887 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 214 tggagcccgcggcgccgaaggaggc 238 ||||||||||||||||| ||||||| Sbjct: 36 tggagcccgcggcgccgcaggaggc 12
>gb|AC153856.23| Mus musculus 10 BAC RP23-468J15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 188027 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 256 agcccggggcggaggaggacggga 279 ||||| |||||||||||||||||| Sbjct: 75147 agcccagggcggaggaggacggga 75170
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 357 gtgctcgcgcagctcctgctcaag 380 ||||||||||||||| |||||||| Sbjct: 224899 gtgctcgcgcagctcgtgctcaag 224922
>gb|BC052680.1| Mus musculus transformed mouse 3T3 cell double minute 1, mRNA (cDNA clone IMAGE:30063481), partial cds Length = 3090 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 256 agcccggggcggaggaggacggga 279 ||||| |||||||||||||||||| Sbjct: 1481 agcccagggcggaggaggacggga 1504
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 357 gtgctcgcgcagctcctgctcaag 380 ||||||||||||||| |||||||| Sbjct: 907176 gtgctcgcgcagctcgtgctcaag 907199
>ref|NM_148922.2| Mus musculus transformed mouse 3T3 cell double minute 1 (Mdm1), transcript variant 2, mRNA Length = 3074 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 256 agcccggggcggaggaggacggga 279 ||||| |||||||||||||||||| Sbjct: 1486 agcccagggcggaggaggacggga 1509
>ref|XM_851492.1| PREDICTED: Canis familiaris hypothetical protein LOC607008 (LOC607008), mRNA Length = 1441 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 gcgccgaaggaggcgccgccgccc 248 ||||||| |||||||||||||||| Sbjct: 506 gcgccgagggaggcgccgccgccc 483
>emb|AL670729.19| Human DNA sequence from clone RP11-245P10 on chromosome 1 Contains the 3' end of the OBSCN gene for obscurin cytoskeletal calmodulin and titin-interacting RhoGEF protein, a novel protein, the TRIM11 gene for tripartite motif-containing 11 protein, the 5' end of a novel transcript, the 3' end of the TRIM17 gene for tripartite motif-containing 17 protein and three CpG islands, complete sequence Length = 62164 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 ccctccccaactccaaaccctacc 115 ||||||||||||||| |||||||| Sbjct: 26937 ccctccccaactccataccctacc 26960
>gb|CP000320.1| Nitrobacter hamburgensis X14 plasmid 1, complete sequence Length = 294829 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 tgctcgcgcagctcctgctc 377 |||||||||||||||||||| Sbjct: 204676 tgctcgcgcagctcctgctc 204657
>emb|X54529.1|BMVVP Belladonna mottle virus VP gene for virion protein and ORF Length = 615 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 aagatctggcggatggagcc 220 |||||||||||||||||||| Sbjct: 155 aagatctggcggatggagcc 136
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 350 cgccgaggtgctcgcgcagctcctgctc 377 ||||||||| ||||||||||||||||| Sbjct: 1521410 cgccgaggtagtcgcgcagctcctgctc 1521437
>emb|BX842651.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 6/11 Length = 346161 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 cgcagctcctgctcaagaag 383 |||||||||||||||||||| Sbjct: 152751 cgcagctcctgctcaagaag 152732
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 357 gtgctcgcgcagctcctgctcaag 380 ||||||||||||||| |||||||| Sbjct: 749559 gtgctcgcgcagctcgtgctcaag 749582
>gb|AF529084.1| Borrelia sp. LB-M56 flagellin gene, partial cds Length = 780 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 355 aggtgctcgcgcagctcctgctcaagaaggag 386 |||||||| |||||||| ||||||||||||| Sbjct: 488 aggtgctcaagcagctccagctcaagaaggag 519
>emb|AL662953.3|OSJN00153 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011F23, complete sequence Length = 149353 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gcgccgccgccccagccaca 256 |||||||||||||||||||| Sbjct: 141384 gcgccgccgccccagccaca 141365
>emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0015K02, complete sequence Length = 153623 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gcgccgccgccccagccaca 256 |||||||||||||||||||| Sbjct: 60767 gcgccgccgccccagccaca 60748
>gb|AY083503.1| Borrelia burgdorferi isolate Na34 flagellin (fla) gene, partial cds Length = 615 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 355 aggtgctcgcgcagctcctgctcaagaaggag 386 |||||||| |||||||| ||||||||||||| Sbjct: 244 aggtgctcaagcagctccagctcaagaaggag 275
>gb|AY083502.1| Borrelia burgdorferi isolate St4 flagellin (fla) gene, partial cds Length = 615 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 355 aggtgctcgcgcagctcctgctcaagaaggag 386 |||||||| |||||||| ||||||||||||| Sbjct: 244 aggtgctcaagcagctccagctcaagaaggag 275
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 312 gccgccgtgctgttccagagccgc 335 |||||||||||||||||| ||||| Sbjct: 4924283 gccgccgtgctgttccagcgccgc 4924260
>gb|AC020704.5| Homo sapiens BAC clone RP11-315L6 from 15, complete sequence Length = 191031 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 aggtccttcataatatggcc 416 |||||||||||||||||||| Sbjct: 146934 aggtccttcataatatggcc 146953
>gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence Length = 181577 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gcgccgccgccccagccaca 256 |||||||||||||||||||| Sbjct: 141502 gcgccgccgccccagccaca 141483
>dbj|AK004789.2| Mus musculus adult male lung cDNA, RIKEN full-length enriched library, clone:1200015H18 product:transformed mouse 3T3 cell double minute 1, full insert sequence Length = 3074 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 256 agcccggggcggaggaggacggga 279 ||||| |||||||||||||||||| Sbjct: 1486 agcccagggcggaggaggacggga 1509
>dbj|AK011769.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610044J23 product:transformed mouse 3T3 cell double minute 1, full insert sequence Length = 2936 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 256 agcccggggcggaggaggacggga 279 ||||| |||||||||||||||||| Sbjct: 1486 agcccagggcggaggaggacggga 1509
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gcgccgccgccccagccaca 256 |||||||||||||||||||| Sbjct: 33710324 gcgccgccgccccagccaca 33710305
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 ctaccgccagtgctccagtt 130 |||||||||||||||||||| Sbjct: 17772492 ctaccgccagtgctccagtt 17772473
>gb|DQ016626.1| Borrelia sp. 6T04-2 flagellin gene, partial cds Length = 598 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 355 aggtgctcgcgcagctcctgctcaagaaggag 386 |||||||| |||||||| ||||||||||||| Sbjct: 383 aggtgctcaagcagctccagctcaagaaggag 414
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 cgaaggaggcgccgccgccc 248 |||||||||||||||||||| Sbjct: 7123003 cgaaggaggcgccgccgccc 7123022
>gb|DQ341314.1| Ascochyta lentis strain ATCC 96420 MAT1-1-1 (MAT1-1-1) gene, complete cds Length = 3214 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aaaccctaccgccagtgctc 125 |||||||||||||||||||| Sbjct: 2729 aaaccctaccgccagtgctc 2710
>gb|AC158804.3| Mus musculus 10 BAC RP24-354M22 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 151309 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 256 agcccggggcggaggaggacggga 279 ||||| |||||||||||||||||| Sbjct: 133227 agcccagggcggaggaggacggga 133250
>dbj|AP005443.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0011E04 Length = 136767 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 ctaccgccagtgctccagtt 130 |||||||||||||||||||| Sbjct: 46886 ctaccgccagtgctccagtt 46867
>dbj|AK111359.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-H04, full insert sequence Length = 598 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gcgccgccgccccagccaca 256 |||||||||||||||||||| Sbjct: 203 gcgccgccgccccagccaca 184
>gb|AF035634.1| Dulcamara mottle tymovirus virion protein gene, complete cds Length = 682 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 aagatctggcggatggagcc 220 |||||||||||||||||||| Sbjct: 161 aagatctggcggatggagcc 142
>emb|AL928560.6| Mouse DNA sequence from clone RP23-353N23 on chromosome 2, complete sequence Length = 209502 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 gccctccccaactccaaaccctac 114 |||||||||| ||||||||||||| Sbjct: 34257 gccctccccacctccaaaccctac 34234
>gb|M20823.1|MUSMDM1A Mouse nuclear protein (mdm-1) mRNA, complete cds Length = 2934 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 256 agcccggggcggaggaggacggga 279 ||||| |||||||||||||||||| Sbjct: 1394 agcccagggcggaggaggacggga 1417 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,520,226 Number of Sequences: 3902068 Number of extensions: 2520226 Number of successful extensions: 54360 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53415 Number of HSP's gapped (non-prelim): 945 length of query: 452 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 430 effective length of database: 17,147,199,772 effective search space: 7373295901960 effective search space used: 7373295901960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
