Clone Name | bastl04a09 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 437 gggagatgtcatatgacatcgaggat 462 |||||||||| ||||||||||||||| Sbjct: 23226543 gggagatgtcttatgacatcgaggat 23226568 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 gcatgctgctgctccattgt 150 |||||||||||||||||||| Sbjct: 25091329 gcatgctgctgctccattgt 25091348
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 437 gggagatgtcatatgacatcgaggat 462 |||||||||| ||||||||||||||| Sbjct: 23154734 gggagatgtcttatgacatcgaggat 23154759 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 gcatgctgctgctccattgt 150 |||||||||||||||||||| Sbjct: 25019531 gcatgctgctgctccattgt 25019550
>emb|AL713908.3|CNS07YQ8 Oryza sativa chromosome 12, . BAC OSJNBa0011B18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 168063 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 437 gggagatgtcatatgacatcgaggat 462 |||||||||| ||||||||||||||| Sbjct: 39661 gggagatgtcttatgacatcgaggat 39686
>gb|AC115905.8| Mus musculus chromosome 1, clone RP24-472N17, complete sequence Length = 173914 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 304 gccaagctaaagaacttgaggaag 327 ||||||||||| |||||||||||| Sbjct: 362 gccaagctaaataacttgaggaag 385
>gb|AC124821.5| Mus musculus chromosome 1, clone RP24-211L16, complete sequence Length = 185212 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 304 gccaagctaaagaacttgaggaag 327 ||||||||||| |||||||||||| Sbjct: 24099 gccaagctaaataacttgaggaag 24076
>ref|XM_480601.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2808 Score = 40.1 bits (20), Expect = 6.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 433 gtcagggagatgtcatatgacatcgaggatattatcgatgacttcatg 480 ||||| |||||| | |||||||||||||| ||||||||||||||| Sbjct: 229 gtcagagagatgacctatgacatcgaggactgcatcgatgacttcatg 276
>ref|XM_480600.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3143 Score = 40.1 bits (20), Expect = 6.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 433 gtcagggagatgtcatatgacatcgaggatattatcgatgacttcatg 480 ||||| |||||| | |||||||||||||| ||||||||||||||| Sbjct: 457 gtcagagagatgacctatgacatcgaggactgcatcgatgacttcatg 504
>gb|AC102856.5| Mus musculus chromosome 8, clone RP24-500H8, complete sequence Length = 195286 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 tccattgtttcagcaacctg 162 |||||||||||||||||||| Sbjct: 171149 tccattgtttcagcaacctg 171130
>gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B06, complete sequence Length = 139139 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ctgcatgctgctgctccatt 148 |||||||||||||||||||| Sbjct: 64971 ctgcatgctgctgctccatt 64952
>gb|AC091454.2| Mus musculus chromosome X, clones RP21-438P10, RP21-382F2, RP21-118B24, Map qA7.1, complete sequences Length = 393632 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ttctccatccatctatccac 41 |||||||||||||||||||| Sbjct: 230504 ttctccatccatctatccac 230523
>gb|AC186150.1| Ornithorhynchus anatinus chromosome UNK clone OABb-264K6, complete sequence Length = 149168 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 33 tctatccacgctgcttctgcttct 56 |||||||||||||||||| ||||| Sbjct: 39107 tctatccacgctgcttcttcttct 39130
>gb|AC133937.3| Mus musculus BAC clone RP24-486L5 from chromosome 5, complete sequence Length = 209392 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 cttctccatccatctatcca 40 |||||||||||||||||||| Sbjct: 168356 cttctccatccatctatcca 168337
>gb|AC127275.4| Mus musculus BAC clone RP24-207I8 from chromosome 5, complete sequence Length = 180919 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 cttctccatccatctatcca 40 |||||||||||||||||||| Sbjct: 35261 cttctccatccatctatcca 35242
>gb|AF143206.1| IncW plasmid pSa ArdC antirestriction protein (ardC) gene, complete cds Length = 1800 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 tcgccaagctaaagaacttg 321 |||||||||||||||||||| Sbjct: 965 tcgccaagctaaagaacttg 984
>emb|CR651945.2|CNS0F20F Tetraodon nigroviridis full-length cDNA Length = 1588 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 gctccattgtttcagcaacc 160 |||||||||||||||||||| Sbjct: 1235 gctccattgtttcagcaacc 1254
>emb|CR638524.2|CNS0ERNM Tetraodon nigroviridis full-length cDNA Length = 1604 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 gctccattgtttcagcaacc 160 |||||||||||||||||||| Sbjct: 1240 gctccattgtttcagcaacc 1259
>gb|AC146334.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone B1356F10, complete sequence Length = 170681 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 436 agggagatgtcatatgacatcgaggatattatcgat 471 |||||| |||| ||| ||||||||||||| |||||| Sbjct: 121327 agggagttgtcctataacatcgaggatatcatcgat 121362
>emb|BX293991.12| Zebrafish DNA sequence from clone CH211-261I24 in linkage group 11, complete sequence Length = 198825 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 16 ttctgcttctccatccatctatcc 39 |||||| ||||||||||||||||| Sbjct: 5299 ttctgcctctccatccatctatcc 5276
>gb|DQ406744.1| Volvox carteri f. nagariensis Met1 (met1) gene, complete cds Length = 29854 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 cacgctgcttctgcttctcc 58 |||||||||||||||||||| Sbjct: 18942 cacgctgcttctgcttctcc 18923
>gb|AC008645.5| Homo sapiens chromosome 5 clone CTB-181L5, complete sequence Length = 104390 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 tccagccagagatgactgga 228 |||||||||||||||||||| Sbjct: 36989 tccagccagagatgactgga 37008
>gb|AC016598.5|AC016598 Homo sapiens chromosome 5 clone CTD-2050E21, complete sequence Length = 159866 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 tccagccagagatgactgga 228 |||||||||||||||||||| Sbjct: 84425 tccagccagagatgactgga 84406
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 436 agggagatgtcatatgacatcgaggatattatcgat 471 |||||| |||| ||| ||||||||||||| |||||| Sbjct: 21597808 agggagttgtcctataacatcgaggatatcatcgat 21597843
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 433 gtcagggagatgtcatatgacatcgaggatattatcgatgacttcatg 480 ||||| |||||| | |||||||||||||| ||||||||||||||| Sbjct: 6131942 gtcagagagatgacctatgacatcgaggactgcatcgatgacttcatg 6131989 Score = 40.1 bits (20), Expect = 6.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 433 gtcagggagatgtcatatgacatcgaggatattatcgatgacttcatg 480 ||||| |||||| | |||||||||||||| ||||||||||||||| Sbjct: 6121677 gtcagagagatgacctatgacatcgaggactgcatcgatgacttcatg 6121724
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ctgcatgctgctgctccatt 148 |||||||||||||||||||| Sbjct: 27700413 ctgcatgctgctgctccatt 27700394
>emb|AL713904.3|CNS07YQ4 Oryza sativa chromosome 12, . BAC OJ1306_H03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121563 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 gcatgctgctgctccattgt 150 |||||||||||||||||||| Sbjct: 40150 gcatgctgctgctccattgt 40131
>dbj|AB182370.1| Escherichia coli plasmid R388 DNA, 13.46 kb SspI-BamHI fragment Length = 13459 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 tcgccaagctaaagaacttg 321 |||||||||||||||||||| Sbjct: 7184 tcgccaagctaaagaacttg 7165
>dbj|AP004565.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0486F07 Length = 154926 Score = 40.1 bits (20), Expect = 6.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 433 gtcagggagatgtcatatgacatcgaggatattatcgatgacttcatg 480 ||||| |||||| | |||||||||||||| ||||||||||||||| Sbjct: 87959 gtcagagagatgacctatgacatcgaggactgcatcgatgacttcatg 88006 Score = 40.1 bits (20), Expect = 6.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 433 gtcagggagatgtcatatgacatcgaggatattatcgatgacttcatg 480 ||||| |||||| | |||||||||||||| ||||||||||||||| Sbjct: 77694 gtcagagagatgacctatgacatcgaggactgcatcgatgacttcatg 77741
>dbj|AK119306.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-F09, full insert sequence Length = 3143 Score = 40.1 bits (20), Expect = 6.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 433 gtcagggagatgtcatatgacatcgaggatattatcgatgacttcatg 480 ||||| |||||| | |||||||||||||| ||||||||||||||| Sbjct: 457 gtcagagagatgacctatgacatcgaggactgcatcgatgacttcatg 504
>dbj|AK111827.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023059I04, full insert sequence Length = 3839 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 451 gacatcgaggatattatcgatgacttca 478 |||||||||||| |||||||||| |||| Sbjct: 1093 gacatcgaggatgttatcgatgagttca 1120
>dbj|AK111562.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067B09, full insert sequence Length = 3140 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 451 gacatcgaggatattatcgatgacttca 478 |||||||||||| |||||||||| |||| Sbjct: 394 gacatcgaggatgttatcgatgagttca 421
>gb|AC158405.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1366F05, complete sequence Length = 171022 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 451 gacatcgaggatattatcgatgacttca 478 |||||||||||| |||||||||| |||| Sbjct: 150472 gacatcgaggatgttatcgatgagttca 150445
>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia Length = 1923819 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 tgctgctgctccattgtttc 153 |||||||||||||||||||| Sbjct: 50991 tgctgctgctccattgtttc 51010
>emb|BX927343.16| Zebrafish DNA sequence from clone CH211-57L21 in linkage group 16, complete sequence Length = 166820 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 17 tctgcttctccatccatctatcca 40 ||||| |||||||||||||||||| Sbjct: 88283 tctgcctctccatccatctatcca 88260
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 436 agggagatgtcatatgacatcgaggatattatcgat 471 |||||| |||| ||| ||||||||||||| |||||| Sbjct: 21908007 agggagttgtcctataacatcgaggatatcatcgat 21908042
>emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa0056D07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146686 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 gcatgctgctgctccattgt 150 |||||||||||||||||||| Sbjct: 15842 gcatgctgctgctccattgt 15823
>emb|AL840624.14| Mouse DNA sequence from clone RP23-183D3 on chromosome X, complete sequence Length = 124795 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ttctccatccatctatccac 41 |||||||||||||||||||| Sbjct: 30553 ttctccatccatctatccac 30572
>tpd|BR000038.1| TPA: TPA_inf: Escherichia coli plasmid R388 DNA, complete sequence Length = 33913 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 tcgccaagctaaagaacttg 321 |||||||||||||||||||| Sbjct: 23260 tcgccaagctaaagaacttg 23241
>emb|AL450395.7| Mouse DNA sequence from clone RP23-145O4 on chromosome X, complete sequence Length = 198602 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 gggtaagctggccaccctga 289 |||||||||||||||||||| Sbjct: 27726 gggtaagctggccaccctga 27745
>emb|AJ301639.1|PYO301639 Plasmodium yoelii pid gene for plasmodium invasion determinant,(ORF1 and ORF3 DNA) Length = 2103 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 tcgccaagctaaagaacttg 321 |||||||||||||||||||| Sbjct: 2083 tcgccaagctaaagaacttg 2102 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,960,586 Number of Sequences: 3902068 Number of extensions: 3960586 Number of successful extensions: 97503 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 97161 Number of HSP's gapped (non-prelim): 340 length of query: 484 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 462 effective length of database: 17,147,199,772 effective search space: 7922006294664 effective search space used: 7922006294664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)