ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl04a07 |
|---|---|
| Clone Library Name | barley_pub |
>AKH2_MAIZE (P49080) Bifunctional aspartokinase/homoserine dehydrogenase 2,| chloroplast precursor (AK-HD 2) (AK-HSDH 2) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] Length = 917 Score = 114 bits (286), Expect = 9e-26 Identities = 67/120 (55%), Positives = 79/120 (65%), Gaps = 6/120 (5%) Frame = +2 Query: 125 MRSLAVASPVPTAAAHRR-RLRPSASGREVISQCLKCGINQDRPLGA-LRLG---GNLPR 289 M+ LAV+ +P AAA R R R S+S RE + QC K ++QD LG LR+G G+L R Sbjct: 1 MQGLAVSCQLPPAAAAARWRPRASSSNREAVLQCWKYELSQDHYLGGPLRIGQSQGSLHR 60 Query: 290 HGSKNLLTPXXXXXXXXXXXX-TYLPKGDMWSVHKFGGTCMGTPQRIQNVADVVLGDSSE 466 H S N L P TYLPKGDMWSVHKFGGTCMGTP+RIQ VA++VLGDSSE Sbjct: 61 HRSTNFLRPAAAAISVEQDEVNTYLPKGDMWSVHKFGGTCMGTPKRIQCVANIVLGDSSE 120
>AKH1_MAIZE (P49079) Bifunctional aspartokinase/homoserine dehydrogenase 1,| chloroplast precursor (AK-HD 1) (AK-HSDH 1) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] Length = 920 Score = 94.7 bits (234), Expect = 1e-19 Identities = 61/123 (49%), Positives = 69/123 (56%), Gaps = 9/123 (7%) Frame = +2 Query: 125 MRSLAVASPVPTAAAHRRR---LRPSASGRE-VISQCLKCGINQDRPLGALRLGGNLPR- 289 MRSL VAS P AA RR L P+A+GR+ +C + QD G+ LPR Sbjct: 1 MRSLTVASRHPGAAFSTRRRPLLHPAAAGRDSTFQRCWRWEKTQDSSFGSSLRTSRLPRT 60 Query: 290 -HGS--KNLLTPXXXXXXXXXXXXTY-LPKGDMWSVHKFGGTCMGTPQRIQNVADVVLGD 457 HG KNLL P LPKGDMWSVHKFGGTCMGT +RI NVAD+VL D Sbjct: 61 VHGDILKNLLAPTAGAVSVEQAEAIADLPKGDMWSVHKFGGTCMGTSERIHNVADIVLRD 120 Query: 458 SSE 466 SE Sbjct: 121 PSE 123
>AKH_DAUCA (P37142) Bifunctional aspartokinase/homoserine dehydrogenase,| chloroplast precursor (AK-HD) (AK-HSDH) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] (Fragment) Length = 921 Score = 59.7 bits (143), Expect = 4e-09 Identities = 23/37 (62%), Positives = 33/37 (89%) Frame = +2 Query: 356 YLPKGDMWSVHKFGGTCMGTPQRIQNVADVVLGDSSE 466 +LP+G MWS+HKFGGTC+G+ +RI+NVA++V+ D SE Sbjct: 85 HLPRGAMWSIHKFGGTCVGSSERIRNVAEIVVEDDSE 121
>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)| Length = 825 Score = 31.2 bits (69), Expect = 1.4 Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 3/58 (5%) Frame = +2 Query: 11 GGLKQGFWRLAFPRCSLLPRHSEPPLLPAFRAASPRREMRSLAVASPVPTAA---AHR 175 GGL Q R A PR ++ PR PP RAA+ S A P P A AHR Sbjct: 399 GGLPQSSGRAARPRAAVAPRVRSPP-----RAAAAPVVSASADAAGPAPPAVPVDAHR 451
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 31.2 bits (69), Expect = 1.4 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -2 Query: 205 PAGGGRPEPPSMGGGCRDGARDGE 134 P GG RP+ GG RDG RDG+ Sbjct: 233 PGGGPRPQGQGRPGGQRDGQRDGQ 256
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 30.8 bits (68), Expect = 1.8 Identities = 18/43 (41%), Positives = 24/43 (55%) Frame = +2 Query: 68 RHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPSA 196 R PP P R +SP R+ R L+ P+A+ RRR RPS+ Sbjct: 364 RSRSPPKKPPKRTSSPPRKTRRLS-----PSASPPRRRHRPSS 401
>AK_HELPY (O25827) Aspartokinase (EC 2.7.2.4) (Aspartate kinase)| Length = 405 Score = 30.8 bits (68), Expect = 1.8 Identities = 15/26 (57%), Positives = 18/26 (69%) Frame = +2 Query: 374 MWSVHKFGGTCMGTPQRIQNVADVVL 451 M V K+GGT MG+ +RI NVA VL Sbjct: 1 MLIVQKYGGTSMGSIERIHNVAQRVL 26
>AK_HELPJ (Q9ZJZ7) Aspartokinase (EC 2.7.2.4) (Aspartate kinase)| Length = 405 Score = 30.8 bits (68), Expect = 1.8 Identities = 15/26 (57%), Positives = 18/26 (69%) Frame = +2 Query: 374 MWSVHKFGGTCMGTPQRIQNVADVVL 451 M V K+GGT MG+ +RI NVA VL Sbjct: 1 MLIVQKYGGTSMGSIERIHNVAQRVL 26
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 30.4 bits (67), Expect = 2.3 Identities = 18/42 (42%), Positives = 23/42 (54%) Frame = +2 Query: 68 RHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPS 193 R PP P R +SP R+ R L+ P+A+ RRR RPS Sbjct: 366 RSRSPPKKPPKRTSSPPRKTRRLS-----PSASPPRRRHRPS 402
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 30.4 bits (67), Expect = 2.3 Identities = 18/42 (42%), Positives = 23/42 (54%) Frame = +2 Query: 68 RHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPS 193 R PP P R +SP R+ R L+ P+A+ RRR RPS Sbjct: 366 RSRSPPKKPPKRTSSPPRKTRRLS-----PSASPPRRRHRPS 402
>CAPP_BURPS (Q63W75) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 994 Score = 30.0 bits (66), Expect = 3.1 Identities = 24/67 (35%), Positives = 30/67 (44%) Frame = +2 Query: 56 SLLPRHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPSASGREVISQCLKCG 235 S P H+EPP A RAA P R++ A PT AA +P RE Sbjct: 18 SSAPAHAEPP---ARRAAKPARKLDGAAARPLAPTNAA---SAKPQGRTRE--------- 62 Query: 236 INQDRPL 256 ++DRPL Sbjct: 63 -DKDRPL 68
>CAPP_BURMA (Q62LC1) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 994 Score = 30.0 bits (66), Expect = 3.1 Identities = 24/67 (35%), Positives = 30/67 (44%) Frame = +2 Query: 56 SLLPRHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPSASGREVISQCLKCG 235 S P H+EPP A RAA P R++ A PT AA +P RE Sbjct: 18 SSAPAHAEPP---ARRAAKPARKLDGAAARPLAPTNAA---SAKPQGRTRE--------- 62 Query: 236 INQDRPL 256 ++DRPL Sbjct: 63 -DKDRPL 68
>AK_PSEAE (O69077) Aspartokinase (EC 2.7.2.4) (Aspartate kinase)| Length = 412 Score = 30.0 bits (66), Expect = 3.1 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = +2 Query: 383 VHKFGGTCMGTPQRIQNVADVV 448 V KFGGT +GT +RI+ VA+ V Sbjct: 5 VQKFGGTSVGTVERIEQVAEKV 26
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 30.0 bits (66), Expect = 3.1 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -2 Query: 202 AGGGRPEPPSMGGGCRDGARDGEAPH 125 A GG P+PP GGG G R AP+ Sbjct: 218 APGGHPKPPHRGGGEPRGGRQHHAPY 243
>AK2_BACST (P53553) Aspartokinase 2 (EC 2.7.2.4) (Aspartokinase II) (Aspartate| kinase 2) [Contains: Aspartokinase II alpha subunit; Aspartokinase II beta subunit] Length = 407 Score = 29.6 bits (65), Expect = 4.0 Identities = 13/23 (56%), Positives = 19/23 (82%) Frame = +2 Query: 383 VHKFGGTCMGTPQRIQNVADVVL 451 V KFGGT +G+ +RIQ+VA+ V+ Sbjct: 5 VQKFGGTSVGSIERIQHVANRVI 27
>K1576_MOUSE (Q80TB8) Probable oxidoreductase KIAA1576 (EC 1.-.-.-)| Length = 417 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = +2 Query: 185 RPSASGREVISQCLKCGINQDRPLGALRLGGNLPRHGSKNLLT 313 R SA G +++ CL CG N + L L+ G +GS N++T Sbjct: 239 RISAEGVDIVLDCL-CGDNTGKGLSLLKPLGTYILYGSSNMVT 280
>NNMT_HUMAN (P40261) Nicotinamide N-methyltransferase (EC 2.1.1.1)| Length = 264 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +2 Query: 203 REVISQCLKCGINQDRPLGALRL 271 R+ + Q LKC + Q +PLGA+ L Sbjct: 132 RQAVKQVLKCDVTQSQPLGAVPL 154
>AK2_BACSG (Q59229) Aspartokinase 2 (EC 2.7.2.4) (Aspartokinase II) (Aspartate| kinase 2) [Contains: Aspartokinase II alpha subunit; Aspartokinase II beta subunit] Length = 411 Score = 29.3 bits (64), Expect = 5.2 Identities = 13/23 (56%), Positives = 18/23 (78%) Frame = +2 Query: 383 VHKFGGTCMGTPQRIQNVADVVL 451 V KFGGT +G+ +RI NVA+ V+ Sbjct: 5 VQKFGGTSVGSVERILNVANRVI 27
>K1576_HUMAN (Q9HCJ6) Probable oxidoreductase KIAA1576 (EC 1.-.-.-)| Length = 419 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = +2 Query: 185 RPSASGREVISQCLKCGINQDRPLGALRLGGNLPRHGSKNLLT 313 R SA G +++ CL CG N + L L+ G +GS N++T Sbjct: 241 RISAEGVDIVLDCL-CGDNTGKGLSLLKPLGTYILYGSSNMVT 282
>DAPF_CORGL (Q8NP73) Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase)| Length = 277 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = -3 Query: 267 LRAPKGRS*FIPHFKHCEITSLPEADGRSLRRWAAAVG 154 LRAP F PH + EI + E D S+R W VG Sbjct: 179 LRAPTFDQEFFPHGVNVEIVTELEDDAVSMRVWERGVG 216
>AK2_BACSU (P08495) Aspartokinase 2 (EC 2.7.2.4) (Aspartokinase II) (Aspartate| kinase 2) [Contains: Aspartokinase II alpha subunit; Aspartokinase II beta subunit] Length = 408 Score = 28.9 bits (63), Expect = 6.8 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +2 Query: 383 VHKFGGTCMGTPQRIQNVADVVLGDSSE 466 V KFGGT +G+ ++IQN A+ + + + Sbjct: 5 VQKFGGTSVGSVEKIQNAANRAIAEKQK 32
>PRAX_MOUSE (O55103) Periaxin| Length = 1391 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +2 Query: 116 RREMRSLAVASPVPTAAAHRRRLRPSASGREVISQ 220 RR +++ AV PVP A A RR P REV + Sbjct: 167 RRGLKAEAVKGPVPAAPARRRLQLPRLRVREVAEE 201
>PRAX_HUMAN (Q9BXM0) Periaxin| Length = 1461 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +2 Query: 116 RREMRSLAVASPVPTAAAHRRRLRPSASGREVISQ 220 RR +++ AV PVP A A RR P REV + Sbjct: 167 RRGLKAEAVKGPVPAAPARRRLQLPRLRVREVAEE 201
>VP4A_FOWPV (Q9J559) Major core protein P4a| Length = 891 Score = 28.5 bits (62), Expect = 8.9 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = -2 Query: 460 RVTKNYISNILNSLRCSHASATELVHRPH 374 RV+K Y++N+L CS + A +L+ H Sbjct: 555 RVSKRYLTNMLQKASCSQSEAEKLLSSAH 583 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,957,932 Number of Sequences: 219361 Number of extensions: 1013530 Number of successful extensions: 3577 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3366 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3574 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
