>NLTP1_LYCES (P93224) Nonspecific lipid-transfer protein 1 precursor (LTP 1)|
          Length = 114

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
 Frame = +2

Query: 206 SSECMTAVLNMSDCLPYVESGSKTRHPDKACCPELDGLLQSNPV-----CLCQLLAGGAD 370
           S  C      ++ CLPY+E     R P   CC  + GLL +          C  L   A+
Sbjct: 24  SLSCGEVTSGLAPCLPYLEG----RGPLGGCCGGVKGLLGAAKTPEDRKTACTCLKSAAN 79

Query: 371 SYGISVDYKRAMALPGVCRLNAP 439
           S    +D  +A  LPGVC +N P
Sbjct: 80  SIK-GIDTGKAAGLPGVCGVNIP 101

>UGPI5_ARATH (Q9C7F7) Uncharacterized GPI-anchored protein At1g27950 precursor|
          Length = 193

 Score = 37.0 bits (84), Expect = 0.022
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
 Frame = +2

Query: 203 ISSECMTAVLNMSDCLPYVESGSKTRHPDKACCPELDGLLQSNPVCLC----QLLAGGAD 370
           ++ EC      ++ CL +     K   P K CC  ++ + + +P CLC    Q   GG  
Sbjct: 31  LADECNQDFQKVTLCLDFATG--KATIPSKKCCDAVEDIKERDPKCLCFVIQQAKTGGQA 88

Query: 371 SYGISVDYKRAMALPGVCRLN 433
              + V   + + LP  C+L+
Sbjct: 89  LKDLGVQEDKLIQLPTSCQLH 109

>MEN8_SILLA (O24356) MEN-8 protein precursor|
          Length = 100

 Score = 37.0 bits (84), Expect = 0.022
 Identities = 22/74 (29%), Positives = 32/74 (43%)
 Frame = +2

Query: 215 CMTAVLNMSDCLPYVESGSKTRHPDKACCPELDGLLQSNPVCLCQLLAGGADSYGISVDY 394
           C + + N++ C PYV  G+   +P + CC  L G+   N  C+C  L             
Sbjct: 38  CASQLGNLNVCAPYVVPGAVNTNPSQECCAALSGV---NHDCMCNTL------------- 81

Query: 395 KRAMALPGVCRLNA 436
           + A  LP  C L A
Sbjct: 82  RVASQLPSSCNLAA 95

>NLTP2_LYCES (P27056) Nonspecific lipid-transfer protein 2 precursor (LTP 2)|
          Length = 114

 Score = 36.2 bits (82), Expect = 0.038
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
 Frame = +2

Query: 215 CMTAVLNMSDCLPYVESGSKTRHPDKACCPELDGLLQS-------NPVCLCQLLAGGADS 373
           C      ++ CLPY++     R P   CC  +  LL S          C C   A  A  
Sbjct: 27  CGQVTAGLAPCLPYLQG----RGPLGGCCGGVKNLLGSAKTTADRKTACTCLKSAANAIK 82

Query: 374 YGISVDYKRAMALPGVCRLNAP 439
               +D  +A  +P VC++N P
Sbjct: 83  ---GIDLNKAAGIPSVCKVNIP 101

>NLTP2_TOBAC (Q03461) Nonspecific lipid-transfer protein 2 precursor (LTP 2)|
          Length = 114

 Score = 35.8 bits (81), Expect = 0.049
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
 Frame = +2

Query: 215 CMTAVLNMSDCLPYVESGSKTRHPDKACCPELDGLLQS-------NPVCLCQLLAGGADS 373
           C      ++ CLPY++     R P  +CC  + GLL +          C C   A  A  
Sbjct: 27  CGQVQSGLAPCLPYLQG----RGPLGSCCGGVKGLLGAAKSLSDRKTACTCLKSAANAIK 82

Query: 374 YGISVDYKRAMALPGVCRLNAP 439
               +D  +A  LPG C +N P
Sbjct: 83  ---GIDMGKAAGLPGACGVNIP 101

>NLT11_PARJU (P43217) Probable nonspecific lipid-transfer protein (LTP) (Major|
           pollen allergen Par j 1.0101) (Par j I) (P5 protein)
           (Fragment)
          Length = 139

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = +2

Query: 215 CMTAVLNMSDCLPYVESGSKTRHPDKACC---PELDGLLQSNP--VCLCQLLAGGADSYG 379
           C T V  +  CLP+V+   K + P K CC     LDG  ++ P  V  C+ +     +Y 
Sbjct: 4   CGTMVRALMPCLPFVQ--GKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYS 61

Query: 380 ISVDYKRAMALPGVC 424
             +D K    +P  C
Sbjct: 62  -DIDGKLVSEVPKHC 75

>NLT13_PARJU (Q40905) Probable nonspecific lipid-transfer protein 1 precursor|
           (LTP) (Major pollen allergen Par j 1.0201) (Par j I) (P1
           protein)
          Length = 138

 Score = 33.9 bits (76), Expect = 0.19
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = +2

Query: 215 CMTAVLNMSDCLPYVESGSKTRHPDKACC---PELDGLLQSNP--VCLCQLLAGGADSYG 379
           C T V  +  CLP+V+   K + P K CC     LDG  ++ P  V  C+ +     +Y 
Sbjct: 40  CGTVVGALMPCLPFVQ--GKEKEPSKGCCSGAKRLDGETKTGPQRVHACECIQTAMKTYS 97

Query: 380 ISVDYKRAMALPGVC 424
             +D K    +P  C
Sbjct: 98  -DIDGKLVSEVPKHC 111

>NLTP2_ARATH (Q9S7I3) Nonspecific lipid-transfer protein 2 precursor (LTP 2)|
          Length = 118

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
 Frame = +2

Query: 215 CMTAVLNMSDCLPYVESGSKTRHPDKACC---PELDGLLQSNP--VCLCQLLAGGADSYG 379
           C T   N++ C+ Y+  G+      + CC     L  +  + P     C+ L   A + G
Sbjct: 29  CGTVNGNLAGCIAYLTRGAPLT---QGCCNGVTNLKNMASTTPDRQQACRCLQSAAKAVG 85

Query: 380 ISVDYKRAMALPGVCRLNAP 439
             ++  RA  LP  C++N P
Sbjct: 86  PGLNTARAAGLPSACKVNIP 105

>NLTP1_PHAAU (P83434) Nonspecific lipid-transfer protein 1 (LTP 1) (NS-LTP1)|
          Length = 91

 Score = 32.7 bits (73), Expect = 0.42
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
 Frame = +2

Query: 233 NMSDCLPYVESGSKTRHPDKACCPELDGLLQSN-------PVCLCQLLAGGADSYGISVD 391
           N++ C+ +++ G        +CC  +  +L S+        VC C   A GA      ++
Sbjct: 9   NLAQCIGFLQKGGVV---PPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR---GIN 62

Query: 392 YKRAMALPGVCRLNAP 439
              A ALPG C +N P
Sbjct: 63  PNNAEALPGKCGVNIP 78

>NLTP1_PRUDU (Q43017) Nonspecific lipid-transfer protein 1 precursor (LTP 1)|
          Length = 117

 Score = 32.3 bits (72), Expect = 0.55
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
 Frame = +2

Query: 215 CMTAVLNMSDCLPYVESGSKTRHPDKACCP---ELDGLLQSNPV------CLCQLLAGGA 367
           C     N++ C+PYV  G        ACC     ++ L ++ P       CL QL A   
Sbjct: 29  CGQVSSNLAPCIPYVRGGGAV---PPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP 85

Query: 368 DSYGISVDYKRAMALPGVCRLNAP 439
                 V+   A ALPG C +N P
Sbjct: 86  -----GVNPNNAAALPGKCGVNIP 104

>A9_BRANA (Q05772) Tapetum-specific protein A9 precursor|
          Length = 96

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 206 SSECMTAVLNMSDCLPYVESGSKTRHPDKACCPELDGLLQSNPVCLCQLL 355
           + +C+  + NM  C P V  G+    P+  CC  L     +N  C+C  L
Sbjct: 29  AQQCLDNLSNMQVCAPLVLPGAVNPAPNSNCCIALQA---TNKDCICNAL 75

>NLT12_PARJU (O04404) Probable nonspecific lipid-transfer protein 1 precursor|
           (LTP) (Major pollen allergen Par j 1.0102) (Par j I) (P9
           protein)
          Length = 176

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = +2

Query: 215 CMTAVLNMSDCLPYVESGSKTRHPDKACC---PELDGLLQS--NPVCLCQLLAGGADSYG 379
           C T V  +  CLP+V+   K + P K CC     LDG  ++    V  C+ +     +Y 
Sbjct: 41  CGTVVRALMPCLPFVQ--GKEKEPSKGCCSGAKRLDGETKTGLQRVHACECIQTAMKTYS 98

Query: 380 ISVDYKRAMALPGVC 424
             +D K    +P  C
Sbjct: 99  -DIDGKLVSEVPKHC 112

>NLTP1_PRUAR (P81651) Nonspecific lipid-transfer protein 1 (LTP 1) (Major|
           allergen Pru ar 3)
          Length = 91

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
 Frame = +2

Query: 215 CMTAVLNMSDCLPYVESGSKTRHPDKACCP---ELDGLLQSNP----VCLCQLLAGGADS 373
           C     +++ C+ YV  G        ACC     ++ L ++ P     C C     G+ S
Sbjct: 3   CGQVSSSLAPCIGYVRGGGAV---PPACCNGIRNVNNLARTTPDRRTACNCLKQLSGSIS 59

Query: 374 YGISVDYKRAMALPGVCRLNAP 439
               V+   A ALPG C +N P
Sbjct: 60  ---GVNPNNAAALPGKCGVNIP 78

>NLTP_MALDO (Q9M5X7) Nonspecific lipid-transfer protein precursor (LTP)|
           (Allergen Mal d 3)
          Length = 115

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
 Frame = +2

Query: 215 CMTAVLNMSDCLPYVESGSKTRHPDKACCP---ELDGLLQSNP----VCLCQLLAGGADS 373
           C     +++ C+ YV SG        ACC     ++GL ++       C C     G+ S
Sbjct: 27  CGQVTSSLAPCIGYVRSGGAV---PPACCNGIRTINGLARTTADRQTACNCLKNLAGSIS 83

Query: 374 YGISVDYKRAMALPGVCRLNAP 439
               V+   A  LPG C +N P
Sbjct: 84  ---GVNPNNAAGLPGKCGVNVP 102

>PARC_SYNY3 (P73077) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase|
           IV subunit A)
          Length = 920

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 16/53 (30%)
 Frame = -3

Query: 339 QTGLDCSRPSSSGQQAL---------------SGCRV-LLPLSTYGRQSDMLS 229
           Q GL CS PS+ GQ+A+                G RV LL  + YG+Q D+ S
Sbjct: 781 QVGLTCSSPSAQGQEAMRLRATESLVGVLMASPGDRVLLLTQAGYGKQLDLAS 833

>NLTP_PRUAV (Q9M5X8) Nonspecific lipid-transfer protein precursor (LTP)|
           (Allergen Pru av 3)
          Length = 117

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 9/84 (10%)
 Frame = +2

Query: 215 CMTAVLNMSDCLPYVESGSKTRHPDKACCPELDGL---------LQSNPVCLCQLLAGGA 367
           C     N++ C+ YV  G        ACC  +  +          Q+   CL QL A   
Sbjct: 29  CGQVSSNLAPCIAYVRGGGAV---PPACCNGIRNINNLAKTTADRQTACNCLKQLSASVP 85

Query: 368 DSYGISVDYKRAMALPGVCRLNAP 439
                 V+   A ALPG C +N P
Sbjct: 86  -----GVNANNAAALPGKCGVNVP 104

>DNAE2_BRAJA (Q89QU8) Error-prone DNA polymerase (EC 2.7.7.7)|
          Length = 1151

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 248 LPYVESGSKTRHPDKACCPELDGLLQSNPV 337
           L Y+ S  K  HPD  CC    GLL S P+
Sbjct: 750 LVYISSWLKYHHPDAFCC----GLLNSQPM 775

>UVRC_NEIG1 (Q5F928) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 628

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 328 GLQQAVQLRAAGLVRVPRLAPALHVRQAVRHVEHR 224
           G+++ +      L R+P  +PALH+ Q VR   HR
Sbjct: 524 GMEELILPFTGELFRLPPNSPALHLLQTVRDESHR 558

>HYAF_ECOLI (P19932) Hydrogenase-1 operon protein hyaF|
          Length = 285

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 2   LLGPATSPYTTTTFLAPVPSEQSKHSITSMAALRRCS 112
           LLGP T P   +  + P+P     +   SMAAL +C+
Sbjct: 8   LLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCA 44

>MAUJ_PARDE (P22566) Methylamine utilization protein mauJ|
          Length = 287

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 363 PPASSWQRQTGLDCSRPSSSGQQALSGCRVLLPLSTYGRQSDMLSTAVM 217
           P   +W+    LD + P+S  + AL G    LPL  YG ++  L+ A++
Sbjct: 41  PVTQAWE----LDIAVPASGLELALPGPGSPLPLRIYGNEAGKLAEAIL 85


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,353,808
Number of Sequences: 219361
Number of extensions: 559887
Number of successful extensions: 2570
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2567
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)