Clone Name | bastl03h10 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_191071.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 564 Score = 218 bits (110), Expect = 1e-53 Identities = 206/238 (86%) Strand = Plus / Plus Query: 202 gatcagctcggagtgcatgaccgcggtgctcaacatgtcggactgcctgccgtacgtgga 261 ||||||| ||| ||||||| |||||||||||||||||||||||||||| |||||||| Sbjct: 120 gatcagcccggcgtgcatggacgcggtgctcaacatgtcggactgcctgacgtacgtgat 179 Query: 262 gagcgggagcaagacgcggcacccggacaaggcctgctgcccggagctggacggcctgct 321 || |||||||| | ||||| | || ||| || | |||||||||||||||| || ||||| Sbjct: 180 gaacgggagcacggcgcggaagcccgacgagccgtgctgcccggagctggcggggctgct 239 Query: 322 gcagtccaaccccgtctgcctctgccagctgctcgccggcggcgccgactcctacggcat 381 ||||||| |||||||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct: 240 cgagtccaagcccgtctgcctctgccagctgctcgccggcggcgccagctcgtacgacat 299 Query: 382 cagcgtcgactacaagcgcgccatggcgctgcccggcgtctgccgcctcaacgcgccg 439 |||||||||||||||||||||||||||||| || ||| ||||| ||||| ||||||| Sbjct: 300 cagcgtcgactacaagcgcgccatggcgctcccgggcatctgcggcctcgccgcgccg 357
>dbj|AP003570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0432B10 Length = 131918 Score = 218 bits (110), Expect = 1e-53 Identities = 206/238 (86%) Strand = Plus / Plus Query: 202 gatcagctcggagtgcatgaccgcggtgctcaacatgtcggactgcctgccgtacgtgga 261 ||||||| ||| ||||||| |||||||||||||||||||||||||||| |||||||| Sbjct: 117010 gatcagcccggcgtgcatggacgcggtgctcaacatgtcggactgcctgacgtacgtgat 117069 Query: 262 gagcgggagcaagacgcggcacccggacaaggcctgctgcccggagctggacggcctgct 321 || |||||||| | ||||| | || ||| || | |||||||||||||||| || ||||| Sbjct: 117070 gaacgggagcacggcgcggaagcccgacgagccgtgctgcccggagctggcggggctgct 117129 Query: 322 gcagtccaaccccgtctgcctctgccagctgctcgccggcggcgccgactcctacggcat 381 ||||||| |||||||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct: 117130 cgagtccaagcccgtctgcctctgccagctgctcgccggcggcgccagctcgtacgacat 117189 Query: 382 cagcgtcgactacaagcgcgccatggcgctgcccggcgtctgccgcctcaacgcgccg 439 |||||||||||||||||||||||||||||| || ||| ||||| ||||| ||||||| Sbjct: 117190 cagcgtcgactacaagcgcgccatggcgctcccgggcatctgcggcctcgccgcgccg 117247
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 218 bits (110), Expect = 1e-53 Identities = 206/238 (86%) Strand = Plus / Plus Query: 202 gatcagctcggagtgcatgaccgcggtgctcaacatgtcggactgcctgccgtacgtgga 261 ||||||| ||| ||||||| |||||||||||||||||||||||||||| |||||||| Sbjct: 34619716 gatcagcccggcgtgcatggacgcggtgctcaacatgtcggactgcctgacgtacgtgat 34619775 Query: 262 gagcgggagcaagacgcggcacccggacaaggcctgctgcccggagctggacggcctgct 321 || |||||||| | ||||| | || ||| || | |||||||||||||||| || ||||| Sbjct: 34619776 gaacgggagcacggcgcggaagcccgacgagccgtgctgcccggagctggcggggctgct 34619835 Query: 322 gcagtccaaccccgtctgcctctgccagctgctcgccggcggcgccgactcctacggcat 381 ||||||| |||||||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct: 34619836 cgagtccaagcccgtctgcctctgccagctgctcgccggcggcgccagctcgtacgacat 34619895 Query: 382 cagcgtcgactacaagcgcgccatggcgctgcccggcgtctgccgcctcaacgcgccg 439 |||||||||||||||||||||||||||||| || ||| ||||| ||||| ||||||| Sbjct: 34619896 cagcgtcgactacaagcgcgccatggcgctcccgggcatctgcggcctcgccgcgccg 34619953
>dbj|AP004331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0085D07 Length = 172483 Score = 218 bits (110), Expect = 1e-53 Identities = 206/238 (86%) Strand = Plus / Plus Query: 202 gatcagctcggagtgcatgaccgcggtgctcaacatgtcggactgcctgccgtacgtgga 261 ||||||| ||| ||||||| |||||||||||||||||||||||||||| |||||||| Sbjct: 71733 gatcagcccggcgtgcatggacgcggtgctcaacatgtcggactgcctgacgtacgtgat 71792 Query: 262 gagcgggagcaagacgcggcacccggacaaggcctgctgcccggagctggacggcctgct 321 || |||||||| | ||||| | || ||| || | |||||||||||||||| || ||||| Sbjct: 71793 gaacgggagcacggcgcggaagcccgacgagccgtgctgcccggagctggcggggctgct 71852 Query: 322 gcagtccaaccccgtctgcctctgccagctgctcgccggcggcgccgactcctacggcat 381 ||||||| |||||||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct: 71853 cgagtccaagcccgtctgcctctgccagctgctcgccggcggcgccagctcgtacgacat 71912 Query: 382 cagcgtcgactacaagcgcgccatggcgctgcccggcgtctgccgcctcaacgcgccg 439 |||||||||||||||||||||||||||||| || ||| ||||| ||||| ||||||| Sbjct: 71913 cagcgtcgactacaagcgcgccatggcgctcccgggcatctgcggcctcgccgcgccg 71970
>dbj|AK061173.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-B11, full insert sequence Length = 1107 Score = 218 bits (110), Expect = 1e-53 Identities = 206/238 (86%) Strand = Plus / Plus Query: 202 gatcagctcggagtgcatgaccgcggtgctcaacatgtcggactgcctgccgtacgtgga 261 ||||||| ||| ||||||| |||||||||||||||||||||||||||| |||||||| Sbjct: 203 gatcagcccggcgtgcatggacgcggtgctcaacatgtcggactgcctgacgtacgtgat 262 Query: 262 gagcgggagcaagacgcggcacccggacaaggcctgctgcccggagctggacggcctgct 321 || |||||||| | ||||| | || ||| || | |||||||||||||||| || ||||| Sbjct: 263 gaacgggagcacggcgcggaagcccgacgagccgtgctgcccggagctggcggggctgct 322 Query: 322 gcagtccaaccccgtctgcctctgccagctgctcgccggcggcgccgactcctacggcat 381 ||||||| |||||||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct: 323 cgagtccaagcccgtctgcctctgccagctgctcgccggcggcgccagctcgtacgacat 382 Query: 382 cagcgtcgactacaagcgcgccatggcgctgcccggcgtctgccgcctcaacgcgccg 439 |||||||||||||||||||||||||||||| || ||| ||||| ||||| ||||||| Sbjct: 383 cagcgtcgactacaagcgcgccatggcgctcccgggcatctgcggcctcgccgcgccg 440
>dbj|AK059376.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-F09, full insert sequence Length = 783 Score = 210 bits (106), Expect = 3e-51 Identities = 205/238 (86%) Strand = Plus / Plus Query: 202 gatcagctcggagtgcatgaccgcggtgctcaacatgtcggactgcctgccgtacgtgga 261 ||||||| ||| || |||| |||||||||||||||||||||||||||| |||||||| Sbjct: 201 gatcagcccggcgttcatggacgcggtgctcaacatgtcggactgcctgacgtacgtgat 260 Query: 262 gagcgggagcaagacgcggcacccggacaaggcctgctgcccggagctggacggcctgct 321 || |||||||| | ||||| | || ||| || | |||||||||||||||| || ||||| Sbjct: 261 gaacgggagcacggcgcggaagcccgacgagccgtgctgcccggagctggcggggctgct 320 Query: 322 gcagtccaaccccgtctgcctctgccagctgctcgccggcggcgccgactcctacggcat 381 ||||||| |||||||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct: 321 cgagtccaagcccgtctgcctctgccagctgctcgccggcggcgccagctcgtacgacat 380 Query: 382 cagcgtcgactacaagcgcgccatggcgctgcccggcgtctgccgcctcaacgcgccg 439 |||||||||||||||||||||||||||||| || ||| ||||| ||||| ||||||| Sbjct: 381 cagcgtcgactacaagcgcgccatggcgctcccgggcatctgcggcctcgccgcgccg 438
>gb|AC097175.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1119_H02, complete sequence Length = 138584 Score = 153 bits (77), Expect = 6e-34 Identities = 155/181 (85%) Strand = Plus / Minus Query: 214 gtgcatgaccgcggtgctcaacatgtcggactgcctgccgtacgtggagagcgggagcaa 273 |||| |||| ||| |||| |||||||||||||||||| |||||||| ||| |||||||| Sbjct: 106234 gtgcctgacggcgctgctgaacatgtcggactgcctgacgtacgtgcagaacgggagcag 106175 Query: 274 gacgcggcacccggacaaggcctgctgcccggagctggacggcctgctgcagtccaaccc 333 | |||||| ||||||||| | |||||||||||||||| ||| ||| || |||||||||| Sbjct: 106174 ggcgcggcggccggacaagccgtgctgcccggagctggccgggctggtggagtccaaccc 106115 Query: 334 cgtctgcctctgccagctgctcgccggcggcgccgactcctacggcatcagcgtcgacta 393 || ||||||||| |||| ||| |||||| || |||||||||||||||| ||||||||| Sbjct: 106114 ggtgtgcctctgcgagctcctctccggcgccggcgactcctacggcatcgccgtcgacta 106055 Query: 394 c 394 | Sbjct: 106054 c 106054
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 153 bits (77), Expect = 6e-34 Identities = 155/181 (85%) Strand = Plus / Minus Query: 214 gtgcatgaccgcggtgctcaacatgtcggactgcctgccgtacgtggagagcgggagcaa 273 |||| |||| ||| |||| |||||||||||||||||| |||||||| ||| |||||||| Sbjct: 23902399 gtgcctgacggcgctgctgaacatgtcggactgcctgacgtacgtgcagaacgggagcag 23902340 Query: 274 gacgcggcacccggacaaggcctgctgcccggagctggacggcctgctgcagtccaaccc 333 | |||||| ||||||||| | |||||||||||||||| ||| ||| || |||||||||| Sbjct: 23902339 ggcgcggcggccggacaagccgtgctgcccggagctggccgggctggtggagtccaaccc 23902280 Query: 334 cgtctgcctctgccagctgctcgccggcggcgccgactcctacggcatcagcgtcgacta 393 || ||||||||| |||| ||| |||||| || |||||||||||||||| ||||||||| Sbjct: 23902279 ggtgtgcctctgcgagctcctctccggcgccggcgactcctacggcatcgccgtcgacta 23902220 Query: 394 c 394 | Sbjct: 23902219 c 23902219 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 345 gccagctgctcgccggcggcg 365 ||||||||||||||||||||| Sbjct: 1750631 gccagctgctcgccggcggcg 1750651 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 345 gccagctgctcgccggcggcg 365 ||||||||||||||||||||| Sbjct: 806392 gccagctgctcgccggcggcg 806412
>dbj|AK069135.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007E22, full insert sequence Length = 1017 Score = 153 bits (77), Expect = 6e-34 Identities = 155/181 (85%) Strand = Plus / Plus Query: 214 gtgcatgaccgcggtgctcaacatgtcggactgcctgccgtacgtggagagcgggagcaa 273 |||| |||| ||| |||| |||||||||||||||||| |||||||| ||| |||||||| Sbjct: 256 gtgcctgacggcgctgctgaacatgtcggactgcctgacgtacgtgcagaacgggagcag 315 Query: 274 gacgcggcacccggacaaggcctgctgcccggagctggacggcctgctgcagtccaaccc 333 | |||||| ||||||||| | |||||||||||||||| ||| ||| || |||||||||| Sbjct: 316 ggcgcggcggccggacaagccgtgctgcccggagctggccgggctggtggagtccaaccc 375 Query: 334 cgtctgcctctgccagctgctcgccggcggcgccgactcctacggcatcagcgtcgacta 393 || ||||||||| |||| ||| |||||| || |||||||||||||||| ||||||||| Sbjct: 376 ggtgtgcctctgcgagctcctctccggcgccggcgactcctacggcatcgccgtcgacta 435 Query: 394 c 394 | Sbjct: 436 c 436
>gb|AY109214.1| Zea mays PCO065577 mRNA sequence Length = 420 Score = 113 bits (57), Expect = 5e-22 Identities = 167/201 (83%), Gaps = 2/201 (0%) Strand = Plus / Plus Query: 228 tgctcaacatgtcggactgcctgccgtacgtg-gagagcgggagcaagacgcggcacccg 286 |||||||||||||||||||||| ||||||||| | || ||||||| | |||||| ||| Sbjct: 55 tgctcaacatgtcggactgcctcccgtacgtgagccag-gggagcacggcgcggcgcccc 113 Query: 287 gacaaggcctgctgcccggagctggacggcctgctgcagtccaaccccgtctgcctctgc 346 ||| | |||||||||||||||||| ||||| | ||||||||||||||||||||| Sbjct: 114 gacgcgccctgctgcccggagctggcgggcctcgtcggctccaaccccgtctgcctctgc 173 Query: 347 cagctgctcgccggcggcgccgactcctacggcatcagcgtcgactacaagcgcgccatg 406 |||| ||| |||||| ||||||||||||||||||| |||||||||| ||||| | Sbjct: 174 gagctcctctccggcgccgccgactcctacggcatcgccgtcgactacggccgcgcgctc 233 Query: 407 gcgctgcccggcgtctgccgc 427 ||||| ||||| ||||||||| Sbjct: 234 gcgctccccggggtctgccgc 254
>emb|AL844871.11| Mouse DNA sequence from clone RP23-271B15 on chromosome 2, complete sequence Length = 179754 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Plus Query: 28 caccaccaccaccttccttgctc 50 ||||||||||||||||||||||| Sbjct: 45438 caccaccaccaccttccttgctc 45460
>gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0056I10, complete sequence Length = 158833 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 339 gcctctgccagctgctcgccggcggcgccg 368 ||||| |||||||||||||||| ||||||| Sbjct: 153117 gcctccgccagctgctcgccggtggcgccg 153146
>gb|AF159296.1|AF159296 Lycopersicon esculentum pollen extensin-like protein (Pex1) gene, complete cds Length = 3059 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 15 ccaccagtccatacaccaccaccacc 40 |||||||||||| ||||||||||||| Sbjct: 2796 ccaccagtccattcaccaccaccacc 2821
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 339 gcctctgccagctgctcgccggcggcgccg 368 ||||| |||||||||||||||| ||||||| Sbjct: 18417752 gcctccgccagctgctcgccggtggcgccg 18417781
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 339 gcctctgccagctgctcgccggcggcgccg 368 ||||| |||||||||||||||| ||||||| Sbjct: 18577153 gcctccgccagctgctcgccggtggcgccg 18577182
>gb|BC107619.1| Danio rerio cDNA clone IMAGE:7255559, partial cds Length = 957 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 ggcctgctgcccggagctgga 312 ||||||||||||||||||||| Sbjct: 564 ggcctgctgcccggagctgga 584
>ref|XM_477534.1| Oryza sativa (japonica cultivar-group), mRNA Length = 228 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 398 cgcgccatggcgctgcccggc 418 ||||||||||||||||||||| Sbjct: 172 cgcgccatggcgctgcccggc 192
>gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0496H07, complete sequence Length = 164477 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 345 gccagctgctcgccggcggcg 365 ||||||||||||||||||||| Sbjct: 10815 gccagctgctcgccggcggcg 10835
>gb|AY021530.1| Oryza sativa microsatellite MRG3855 containing (TA)X28, genomic sequence Length = 256 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 345 gccagctgctcgccggcggcg 365 ||||||||||||||||||||| Sbjct: 26 gccagctgctcgccggcggcg 46
>gb|AC079357.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0033D06, complete sequence Length = 142659 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 345 gccagctgctcgccggcggcg 365 ||||||||||||||||||||| Sbjct: 63360 gccagctgctcgccggcggcg 63380
>gb|AC108504.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1654_B10, complete sequence Length = 140282 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 345 gccagctgctcgccggcggcg 365 ||||||||||||||||||||| Sbjct: 78834 gccagctgctcgccggcggcg 78854
>ref|XM_423713.1| PREDICTED: Gallus gallus similar to centaurin, gamma 3; MRIP-1 protein (LOC426036), partial mRNA Length = 7841 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 401 gccatggcgctgcccggcgtctgcc 425 ||||||||||||||||||| ||||| Sbjct: 4194 gccatggcgctgcccggcgcctgcc 4218
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 ctgccaccagtccatacacca 32 ||||||||||||||||||||| Sbjct: 7571438 ctgccaccagtccatacacca 7571418
>gb|BT025234.1| Drosophila melanogaster FI01003 full insert cDNA Length = 1012 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 306 agctggacggcctgctgcagt 326 ||||||||||||||||||||| Sbjct: 652 agctggacggcctgctgcagt 672
>emb|CR318625.10| Zebrafish DNA sequence from clone DKEY-119A7 in linkage group 17, complete sequence Length = 142057 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 ggcctgctgcccggagctgga 312 ||||||||||||||||||||| Sbjct: 88191 ggcctgctgcccggagctgga 88211
>gb|AC122521.4| Mus musculus BAC clone RP24-476C7 from chromosome 6, complete sequence Length = 142127 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 catacaccaccaccaccttcc 44 ||||||||||||||||||||| Sbjct: 68855 catacaccaccaccaccttcc 68835
>gb|AF237701.4| Pseudomonas fluorescens putative acetylase, pvdS, putative thioesterase, and pyoverdine synthetase A (pvsA) genes, complete cds; and unknown gene Length = 17277 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 399 gcgccatggcgctgcccggcg 419 ||||||||||||||||||||| Sbjct: 3285 gcgccatggcgctgcccggcg 3305
>emb|BX294020.1|NC7F4 Neurospora crassa DNA linkage group V Cosmid contig 7F4 Length = 115416 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 34 caccaccttccttgctcccgtccca 58 ||||||||||| ||||||||||||| Sbjct: 52331 caccaccttccatgctcccgtccca 52355
>emb|CR847930.5| Zebrafish DNA sequence from clone DKEY-148H19 in linkage group 19, complete sequence Length = 167262 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 agcaaacactcgatcacctcg 88 ||||||||||||||||||||| Sbjct: 154184 agcaaacactcgatcacctcg 154164
>ref|NM_134730.2| Drosophila melanogaster Tfb4 CG5041-RA (Tfb4), mRNA Length = 995 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 306 agctggacggcctgctgcagt 326 ||||||||||||||||||||| Sbjct: 652 agctggacggcctgctgcagt 672
>gb|AF129005.1|AF129005 Mus musculus VNO olfactory cluster Length = 198515 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 catacaccaccaccaccttcc 44 ||||||||||||||||||||| Sbjct: 194792 catacaccaccaccaccttcc 194772
>gb|AY071043.1| Drosophila melanogaster RE13149 full length cDNA Length = 1011 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 306 agctggacggcctgctgcagt 326 ||||||||||||||||||||| Sbjct: 652 agctggacggcctgctgcagt 672
>gb|BC096816.1| Danio rerio cDNA clone IMAGE:7159603 Length = 2875 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 ggcctgctgcccggagctgga 312 ||||||||||||||||||||| Sbjct: 566 ggcctgctgcccggagctgga 586
>gb|AC008319.4|AC008319 Drosophila melanogaster, chromosome 2L, region 21E-22A, BAC clone BACR38A03, complete sequence Length = 189315 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 306 agctggacggcctgctgcagt 326 ||||||||||||||||||||| Sbjct: 166083 agctggacggcctgctgcagt 166103
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 398 cgcgccatggcgctgcccggc 418 ||||||||||||||||||||| Sbjct: 11284529 cgcgccatggcgctgcccggc 11284549
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 ctgccaccagtccatacacca 32 ||||||||||||||||||||| Sbjct: 7569273 ctgccaccagtccatacacca 7569253
>emb|BX817119.1|CNS0AD2R Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH86ZC09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1581 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 16 caccagtccatacaccaccaccacc 40 ||||||||||||| ||||||||||| Sbjct: 1176 caccagtccataccccaccaccacc 1200
>gb|AC134239.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0042A11, complete sequence Length = 113049 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 ctgccaccagtccatacacca 32 ||||||||||||||||||||| Sbjct: 100334 ctgccaccagtccatacacca 100314
>gb|AC124944.8| Homo sapiens 3 BAC RP11-352G9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 121914 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 acaaggcctgctgcccggagc 308 ||||||||||||||||||||| Sbjct: 84142 acaaggcctgctgcccggagc 84122
>gb|BC093338.1| Danio rerio cDNA clone IMAGE:7409350, partial cds Length = 1270 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 ggcctgctgcccggagctgga 312 ||||||||||||||||||||| Sbjct: 552 ggcctgctgcccggagctgga 572
>dbj|AP005674.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1126F07 Length = 125007 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 398 cgcgccatggcgctgcccggc 418 ||||||||||||||||||||| Sbjct: 98507 cgcgccatggcgctgcccggc 98527
>dbj|AK106226.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-A05, full insert sequence Length = 1394 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 345 gccagctgctcgccggcggcg 365 ||||||||||||||||||||| Sbjct: 1018 gccagctgctcgccggcggcg 1038
>emb|BX537287.8| Zebrafish DNA sequence from clone CH211-206O8 in linkage group 19, complete sequence Length = 195505 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 agcaaacactcgatcacctcg 88 ||||||||||||||||||||| Sbjct: 63978 agcaaacactcgatcacctcg 63998
>dbj|AP004398.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0438G07 Length = 138878 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 398 cgcgccatggcgctgcccggc 418 ||||||||||||||||||||| Sbjct: 124505 cgcgccatggcgctgcccggc 124525
>gb|AE003587.4| Drosophila melanogaster chromosome 2L, section 4 of 83 of the complete sequence Length = 314549 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 agctggacggcctgctgcagt 326 ||||||||||||||||||||| Sbjct: 229609 agctggacggcctgctgcagt 229589
>gb|BT018678.1| Zea mays clone EL01N0511B03.d mRNA sequence Length = 1945 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 349 gctgctcgccggcggcgccgactc 372 |||||||||||||| ||||||||| Sbjct: 625 gctgctcgccggcgccgccgactc 648
>gb|AC011249.7| Drosophila melanogaster clone BACR37F23, complete sequence Length = 164973 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 caagtgagcaaagcaaacac 76 |||||||||||||||||||| Sbjct: 156000 caagtgagcaaagcaaacac 156019
>gb|AC093100.2| Drosophila melanogaster clone BACR05J04, complete sequence Length = 214621 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 caagtgagcaaagcaaacac 76 |||||||||||||||||||| Sbjct: 79665 caagtgagcaaagcaaacac 79684
>ref|XM_419389.1| PREDICTED: Gallus gallus similar to CG7611-PA (LOC421324), mRNA Length = 1908 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 gccagctgctcgccggcggc 364 |||||||||||||||||||| Sbjct: 272 gccagctgctcgccggcggc 253
>gb|AY644638.1| Oryza sativa (japonica cultivar-group) caffeoyl-CoA O-methyltransferase (COA26) gene, complete cds Length = 1116 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 ccagctgctcgccggcggcg 365 |||||||||||||||||||| Sbjct: 710 ccagctgctcgccggcggcg 729
>ref|NM_000748.1| Homo sapiens cholinergic receptor, nicotinic, beta 2 (neuronal) (CHRNB2), mRNA Length = 2448 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 tacaccaccaccaccttcct 45 |||||||||||||||||||| Sbjct: 1720 tacaccaccaccaccttcct 1739
>ref|XM_676687.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8510.2), mRNA Length = 975 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 365 gccgactcctacggcatcagcgtc 388 ||||||||||||||||||| |||| Sbjct: 676 gccgactcctacggcatcaacgtc 699
>gb|BC075040.2| Homo sapiens cholinergic receptor, nicotinic, beta 2 (neuronal), mRNA (cDNA clone MGC:103958 IMAGE:30915357), complete cds Length = 1570 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 tacaccaccaccaccttcct 45 |||||||||||||||||||| Sbjct: 1485 tacaccaccaccaccttcct 1504
>gb|BC075041.2| Homo sapiens cholinergic receptor, nicotinic, beta 2 (neuronal), mRNA (cDNA clone MGC:104119 IMAGE:30915573), complete cds Length = 1570 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 tacaccaccaccaccttcct 45 |||||||||||||||||||| Sbjct: 1485 tacaccaccaccaccttcct 1504
>emb|AL592078.10| Human DNA sequence from clone RP11-61L14 on chromosome 1 Contains the 3' end of a novel gene (DKFZp434M202), the UBE2Q gene for ubiquitin-conjugating enzyme E2Q (putative), a novel gene, the CHRNB2 gene for cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal), a novel gene, the 3' end of the ADAR gene for adenosine deaminase, RNA-specific, complete sequence Length = 64759 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 tacaccaccaccaccttcct 45 |||||||||||||||||||| Sbjct: 10766 tacaccaccaccaccttcct 10747
>emb|Y08415.1|HSNACHRB2 H.sapiens mRNA for nicotinic acetylcholine receptor beta2 subunit precursor Length = 1509 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 tacaccaccaccaccttcct 45 |||||||||||||||||||| Sbjct: 1456 tacaccaccaccaccttcct 1475
>emb|X53179.1|HSHACHRB2 Human mRNA for neuronal nicotinic acetylcholine receptor beta-2 subunit Length = 1771 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 tacaccaccaccaccttcct 45 |||||||||||||||||||| Sbjct: 1622 tacaccaccaccaccttcct 1641
>gb|AC051632.18| Oryza sativa chromosome 10 BAC OSJNBa0012L23 genomic sequence, complete sequence Length = 153182 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 334 cgtctgcctctgccagctgctcgccggc 361 |||||||| ||||| ||||||||||||| Sbjct: 128595 cgtctgccgctgcccgctgctcgccggc 128568
>gb|AF077186.2| Homo sapiens neuronal nicotinic acetylcholine receptor beta 2 (CHRNB2) gene, complete cds Length = 11944 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 tacaccaccaccaccttcct 45 |||||||||||||||||||| Sbjct: 11223 tacaccaccaccaccttcct 11242
>emb|BX649274.9| Zebrafish DNA sequence from clone CH211-153J14 in linkage group 19, complete sequence Length = 45978 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 tacaccaccaccaccttcct 45 |||||||||||||||||||| Sbjct: 3065 tacaccaccaccaccttcct 3046
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 gctgctcgccggcggcgccg 368 |||||||||||||||||||| Sbjct: 602192 gctgctcgccggcggcgccg 602173
>gb|AE012065.1| Xanthomonas axonopodis pv. citri str. 306, section 443 of 469 of the complete genome Length = 12654 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 gcctgctgcccggagctgga 312 |||||||||||||||||||| Sbjct: 9317 gcctgctgcccggagctgga 9298
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 gccatggcgctgcccggcgt 420 |||||||||||||||||||| Sbjct: 3264733 gccatggcgctgcccggcgt 3264752
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 gctgctcgccggcggcgccg 368 |||||||||||||||||||| Sbjct: 2069333 gctgctcgccggcggcgccg 2069314
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 334 cgtctgcctctgccagctgctcgccggc 361 |||||||| ||||| ||||||||||||| Sbjct: 17773475 cgtctgccgctgcccgctgctcgccggc 17773448
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 348 agctgctcgccggcggcgccgact 371 |||| ||||||||||||||||||| Sbjct: 11239933 agctcctcgccggcggcgccgact 11239910
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 ccagctgctcgccggcggcg 365 |||||||||||||||||||| Sbjct: 24590970 ccagctgctcgccggcggcg 24590951
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 gctgctcgccggcggcgccg 368 |||||||||||||||||||| Sbjct: 28761376 gctgctcgccggcggcgccg 28761395
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 gccagctgctcgccggcggcgccg 368 ||||||||||||||| |||||||| Sbjct: 7708247 gccagctgctcgccgacggcgccg 7708270
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ctgctcgccggcggcgccga 369 |||||||||||||||||||| Sbjct: 2679745 ctgctcgccggcggcgccga 2679726
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0028E05 Length = 157631 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 gctgctcgccggcggcgccg 368 |||||||||||||||||||| Sbjct: 69151 gctgctcgccggcggcgccg 69170
>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0622F03 Length = 170064 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 gctgctcgccggcggcgccg 368 |||||||||||||||||||| Sbjct: 161942 gctgctcgccggcggcgccg 161961
>dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0026F07 Length = 137354 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 ccagctgctcgccggcggcg 365 |||||||||||||||||||| Sbjct: 99230 ccagctgctcgccggcggcg 99211
>dbj|AP005689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0042H24 Length = 186313 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 348 agctgctcgccggcggcgccgact 371 |||| ||||||||||||||||||| Sbjct: 75105 agctcctcgccggcggcgccgact 75082
>gb|AE005081.1| Halobacterium sp. NRC-1 section 112 of 170 of the complete genome Length = 19293 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 gccagctgctcgccggcggcgccg 368 |||||||||||| ||||||||||| Sbjct: 16284 gccagctgctcggcggcggcgccg 16307
>dbj|AK106735.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-A04, full insert sequence Length = 1895 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 ccagctgctcgccggcggcg 365 |||||||||||||||||||| Sbjct: 1374 ccagctgctcgccggcggcg 1393
>dbj|AK105934.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-B05, full insert sequence Length = 1101 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 gctgctcgccggcggcgccg 368 |||||||||||||||||||| Sbjct: 142 gctgctcgccggcggcgccg 161
>gb|AE003613.4| Drosophila melanogaster chromosome 2L, section 22 of 83 of the complete sequence Length = 280095 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 caagtgagcaaagcaaacac 76 |||||||||||||||||||| Sbjct: 188207 caagtgagcaaagcaaacac 188188
>emb|AJ001939.1|HSAJ1939 Homo sapiens CHRNB2 gene, exon 6 Length = 406 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 tacaccaccaccaccttcct 45 |||||||||||||||||||| Sbjct: 237 tacaccaccaccaccttcct 256
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 334 cgtctgcctctgccagctgctcgccggc 361 |||||||| ||||| ||||||||||||| Sbjct: 17782728 cgtctgccgctgcccgctgctcgccggc 17782701
>gb|AC005285.1|AC005285 Drosophila melanogaster DNA sequence (P1s DS00121 (D128), DS05470 (D270), and DS00108 (D120)), complete sequence Length = 209071 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 caagtgagcaaagcaaacac 76 |||||||||||||||||||| Sbjct: 201561 caagtgagcaaagcaaacac 201542
>gb|U62437.1|HSU62437 Human nicotinic acetylcholine receptor beta2 subunit precursor, mRNA, complete cds Length = 2448 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 tacaccaccaccaccttcct 45 |||||||||||||||||||| Sbjct: 1720 tacaccaccaccaccttcct 1739
>gb|M33154.1|CUCNITRA C.maxima nitrate reductase mRNA Length = 3076 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 caccaccaccaccttccttg 47 |||||||||||||||||||| Sbjct: 47 caccaccaccaccttccttg 28 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,936,023 Number of Sequences: 3902068 Number of extensions: 2936023 Number of successful extensions: 74438 Number of sequences better than 10.0: 83 Number of HSP's better than 10.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73139 Number of HSP's gapped (non-prelim): 1299 length of query: 446 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 424 effective length of database: 17,147,199,772 effective search space: 7270412703328 effective search space used: 7270412703328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)