ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl03h04 |
|---|---|
| Clone Library Name | barley_pub |
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 118 bits (295), Expect = 8e-27 Identities = 62/79 (78%), Positives = 62/79 (78%) Frame = +2 Query: 212 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRGNEIDEDLHSRQLAVYGRETM 391 MLPRKREIVAGEVEDLQKK MA RGNEIDEDLHSRQLAVYGRETM Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEVTREEGDAAMAGRGNEIDEDLHSRQLAVYGRETM 60 Query: 392 KRLFGSNVLVSGLQGLGAE 448 KRLFGSNVLVSGLQGLGAE Sbjct: 61 KRLFGSNVLVSGLQGLGAE 79
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 115 bits (289), Expect = 4e-26 Identities = 61/79 (77%), Positives = 61/79 (77%) Frame = +2 Query: 212 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRGNEIDEDLHSRQLAVYGRETM 391 MLPRKREIVAGEVEDLQKK MA RGNEIDEDLHSRQLAVYGRETM Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEATREEGDAAMAGRGNEIDEDLHSRQLAVYGRETM 60 Query: 392 KRLFGSNVLVSGLQGLGAE 448 K LFGSNVLVSGLQGLGAE Sbjct: 61 KPLFGSNVLVSGLQGLGAE 79
>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 70.1 bits (170), Expect = 2e-12 Identities = 34/38 (89%), Positives = 36/38 (94%) Frame = +2 Query: 335 EIDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAE 448 EIDEDLHSRQLAVYGRETM+RLF S+VLVSGL GLGAE Sbjct: 45 EIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAE 82
>UBE1_RABIT (Q29504) Ubiquitin-activating enzyme E1| Length = 1058 Score = 53.5 bits (127), Expect = 2e-07 Identities = 30/46 (65%), Positives = 35/46 (76%), Gaps = 2/46 (4%) Frame = +2 Query: 317 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAE 448 MA+ G+E IDE L+SRQL V G E MKRL S+VLVSGL+GLG E Sbjct: 41 MAKNGSEADIDEGLYSRQLYVLGHEAMKRLQTSSVLVSGLRGLGVE 86
>UBE1_HUMAN (P22314) Ubiquitin-activating enzyme E1 (A1S9 protein)| Length = 1058 Score = 53.5 bits (127), Expect = 2e-07 Identities = 30/46 (65%), Positives = 35/46 (76%), Gaps = 2/46 (4%) Frame = +2 Query: 317 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAE 448 MA+ G+E IDE L+SRQL V G E MKRL S+VLVSGL+GLG E Sbjct: 41 MAKNGSEADIDEGLYSRQLYVLGHEAMKRLQTSSVLVSGLRGLGVE 86
>UBE1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1| Length = 1058 Score = 51.6 bits (122), Expect = 9e-07 Identities = 29/46 (63%), Positives = 34/46 (73%), Gaps = 2/46 (4%) Frame = +2 Query: 317 MARRGNE--IDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAE 448 MA+ G+E IDE L+SRQL V G E MK L S+VLVSGL+GLG E Sbjct: 41 MAKNGSEADIDESLYSRQLYVLGHEAMKMLQTSSVLVSGLRGLGVE 86
>UBE1L_HUMAN (P41226) Ubiquitin-activating enzyme E1 homolog (D8)| Length = 1011 Score = 49.7 bits (117), Expect = 3e-06 Identities = 24/37 (64%), Positives = 30/37 (81%) Frame = +2 Query: 338 IDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAE 448 +DE+L+SRQL V G M+R+ G+ VLVSGLQGLGAE Sbjct: 10 LDEELYSRQLYVLGSPAMQRIQGARVLVSGLQGLGAE 46
>UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1| Length = 1024 Score = 47.4 bits (111), Expect = 2e-05 Identities = 23/38 (60%), Positives = 29/38 (76%) Frame = +2 Query: 335 EIDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAE 448 EIDE L+SRQL V G+E M ++ SNVL+ GL+GLG E Sbjct: 13 EIDESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVE 50
>UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport| protein 3) Length = 1012 Score = 47.0 bits (110), Expect = 2e-05 Identities = 23/39 (58%), Positives = 28/39 (71%) Frame = +2 Query: 332 NEIDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAE 448 N IDE L+SRQL V G E MK++ SNVL+ G +GLG E Sbjct: 13 NTIDEGLYSRQLYVLGHEAMKQMSQSNVLIIGCKGLGVE 51
>ULE1A_HUMAN (Q9UBE0) Ubiquitin-like 1-activating enzyme E1A (SUMO-1-activating| enzyme subunit 1) Length = 346 Score = 36.6 bits (83), Expect = 0.029 Identities = 17/32 (53%), Positives = 23/32 (71%) Frame = +2 Query: 353 HSRQLAVYGRETMKRLFGSNVLVSGLQGLGAE 448 + RQ+ ++G E KRL S VL+ GL+GLGAE Sbjct: 19 YDRQIRLWGLEAQKRLRASRVLLVGLKGLGAE 50
>ULE1A_MOUSE (Q9R1T2) Ubiquitin-like 1-activating enzyme E1A (SUMO-1-activating| enzyme subunit 1) Length = 350 Score = 36.6 bits (83), Expect = 0.029 Identities = 16/32 (50%), Positives = 23/32 (71%) Frame = +2 Query: 353 HSRQLAVYGRETMKRLFGSNVLVSGLQGLGAE 448 + RQ+ ++G E KRL S VL+ G++GLGAE Sbjct: 23 YDRQIRLWGLEAQKRLRASRVLIVGMKGLGAE 54
>CP2D6_HUMAN (P10635) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6) (P450-DB1)| (Debrisoquine 4-hydroxylase) Length = 497 Score = 30.8 bits (68), Expect = 1.6 Identities = 22/49 (44%), Positives = 26/49 (53%) Frame = -1 Query: 400 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 254 EAL LA I +A +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2DQ_RAT (P10634) Cytochrome P450 2D26 (EC 1.14.14.1) (CYPIID26) (P450-DB2)| (P450-CMF2) (Debrisoquine 4-hydroxylase) Length = 500 Score = 29.3 bits (64), Expect = 4.6 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = -1 Query: 349 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 254 +LVDLV + PG +PLPG G LLQV Sbjct: 21 LLVDLVHRHKFWTAHYPPGPVPLPGLGNLLQV 52
>CP2DH_MACFA (Q29488) Cytochrome P450 2D17 (EC 1.14.14.1) (CYPIID17)| Length = 497 Score = 29.3 bits (64), Expect = 4.6 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = -1 Query: 394 LHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 254 L L + +A +LVDL+ + PG LPLPG G LL V Sbjct: 3 LDALVPLAVTVAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_PANTR (Q2XNC8) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 29.3 bits (64), Expect = 4.6 Identities = 21/49 (42%), Positives = 25/49 (51%) Frame = -1 Query: 400 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 254 EAL LA I + +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VTIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_PANPA (Q2XNC9) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 29.3 bits (64), Expect = 4.6 Identities = 21/49 (42%), Positives = 25/49 (51%) Frame = -1 Query: 400 EALHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 254 EAL LA I + +LVDL+ + PG LPLPG G LL V Sbjct: 4 EALVPLAVI---VTIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2DP_PIG (O46658) Cytochrome P450 2D25 (EC 1.14.14.-) (CYPIID25) (Vitamin| D(3) 25-hydroxylase) Length = 499 Score = 29.3 bits (64), Expect = 4.6 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -1 Query: 349 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 254 +LVDL+ + PG +PLPG G LLQV Sbjct: 20 LLVDLMHRRSRWAPRYPPGPMPLPGLGNLLQV 51
>YBHO_SALTY (Q8ZQP4) Putative cardiolipin synthetase ybhO (EC 2.7.8.-)| (Cardiolipin synthase) (CL synthase) Length = 413 Score = 28.9 bits (63), Expect = 6.0 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = +1 Query: 349 PAQSPARRLWPRDHEA 396 P QSPARR W R H+A Sbjct: 168 PGQSPARRWWKRHHQA 183
>YBHO_SALTI (Q8Z883) Putative cardiolipin synthetase ybhO (EC 2.7.8.-)| (Cardiolipin synthase) (CL synthase) Length = 413 Score = 28.9 bits (63), Expect = 6.0 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = +1 Query: 349 PAQSPARRLWPRDHEA 396 P QSPARR W R H+A Sbjct: 168 PGQSPARRWWKRHHQA 183
>LEU1_STRCO (O31046) 2-isopropylmalate synthase (EC 2.3.3.13)| (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase) Length = 573 Score = 28.5 bits (62), Expect = 7.9 Identities = 13/46 (28%), Positives = 21/46 (45%) Frame = +3 Query: 3 CNPVLQSHPRNPRRTVPRLLPSPTRQANPRFRGGRTRWI*RGSSRR 140 C V+ ++ P R + LP+ ++ P R W+ R SRR Sbjct: 200 CEAVMDTYQPGPGREIILNLPATVERSTPSTHADRFEWMGRNLSRR 245
>CP2DJ_CALJA (O18992) Cytochrome P450 2D19 (EC 1.14.14.1) (CYPIID19) (P450| CM2D-1) Length = 497 Score = 28.5 bits (62), Expect = 7.9 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -1 Query: 394 LHGLAAIDGELATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 254 L L + +A +LVDL+ + PG +PLPG G LL V Sbjct: 3 LDALVPLAVTVAIFVLLVDLMHRRQRWAARYPPGPMPLPGLGNLLHV 49 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,536,697 Number of Sequences: 219361 Number of extensions: 869211 Number of successful extensions: 3371 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3179 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3368 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
