Clone Name | bastl03h02 |
---|---|
Clone Library Name | barley_pub |
>PLDD1_ARATH (Q9C5Y0) Phospholipase D delta (EC 3.1.4.4) (AtPLDdelta) (PLD| delta) Length = 868 Score = 57.0 bits (136), Expect = 2e-08 Identities = 24/38 (63%), Positives = 31/38 (81%) Frame = +1 Query: 307 VLLHGDLDLWVLEARLLPNMDMFSEHIRRCFASCGTAS 420 +LLHGDLDL +++AR LPNMDMFSEH+RR F +C + Sbjct: 10 MLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACA 47
>PLDG1_ARATH (Q9T053) Phospholipase D gamma 1 (EC 3.1.4.4) (AtPLDgamma1) (PLD| gamma 1) (Choline phosphatase) (Lipophosphodiesterase II) (Lecithinase D) Length = 858 Score = 38.9 bits (89), Expect = 0.005 Identities = 17/34 (50%), Positives = 22/34 (64%) Frame = +1 Query: 310 LLHGDLDLWVLEARLLPNMDMFSEHIRRCFASCG 411 LLHG+LD+WV EA+ LPNMD F + + G Sbjct: 39 LLHGNLDIWVKEAKHLPNMDGFHNRLGGMLSGLG 72
>PLDB1_ARATH (P93733) Phospholipase D beta 1 (EC 3.1.4.4) (AtPLDbeta1) (PLD beta| 1) (PLDbeta) Length = 967 Score = 38.9 bits (89), Expect = 0.005 Identities = 16/33 (48%), Positives = 23/33 (69%) Frame = +1 Query: 301 KPVLLHGDLDLWVLEARLLPNMDMFSEHIRRCF 399 K +L HG+LD+W+ A+ LPNMDMF + + F Sbjct: 150 KVLLSHGNLDIWIYHAKNLPNMDMFHKTLGDMF 182
>PLDG3_ARATH (Q9T052) Phospholipase D gamma 3 (EC 3.1.4.4) (AtPLDgamma3) (PLD| gamma 3) Length = 866 Score = 38.9 bits (89), Expect = 0.005 Identities = 18/32 (56%), Positives = 22/32 (68%) Frame = +1 Query: 280 DESPSPPKPVLLHGDLDLWVLEARLLPNMDMF 375 D S + LLHG+LD+WV EA+ LPNMD F Sbjct: 33 DTSSGSLRVELLHGNLDIWVKEAKHLPNMDGF 64
>PLDB2_ARATH (O23078) Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDbeta2) (PLD beta| 2) (PLDdelta1) Length = 915 Score = 36.2 bits (82), Expect = 0.035 Identities = 15/25 (60%), Positives = 20/25 (80%) Frame = +1 Query: 301 KPVLLHGDLDLWVLEARLLPNMDMF 375 K +LLHG+LD+WV A LPN+D+F Sbjct: 111 KVLLLHGNLDIWVSCANNLPNLDLF 135
>ISPH_THET8 (Q5SMC8) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 340 Score = 29.3 bits (64), Expect = 4.3 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%) Frame = -2 Query: 372 HVHVGQQPRLEDPE-VEVPVQE 310 H HVG+ PRL DP VEVP E Sbjct: 161 HTHVGKDPRLADPRTVEVPDPE 182
>ISPH_THET2 (Q72G65) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 340 Score = 29.3 bits (64), Expect = 4.3 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%) Frame = -2 Query: 372 HVHVGQQPRLEDPE-VEVPVQE 310 H HVG+ PRL DP VEVP E Sbjct: 161 HTHVGKDPRLADPRTVEVPDPE 182
>VMAT_RABVP (P08671) Matrix protein (M2 phosphoprotein)| Length = 202 Score = 28.1 bits (61), Expect = 9.7 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = +1 Query: 280 DESPSPPKPVLLH-GDLDLWVLEARLLPNMDMFSEHIRRCFASCGTASSCAP 432 DE P PV D DLW+ +P ++ S+ RR F G C+P Sbjct: 13 DEDTQKPSPVSAPLDDDDLWLPPPEYVPLKELTSKKNRRNFCINGGVKVCSP 64 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,768,120 Number of Sequences: 219361 Number of extensions: 270252 Number of successful extensions: 849 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 839 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 849 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)