>POLN_RRVN (P13887) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; mRNA capping enzyme nsP1 (EC 2.1.1.-)
            (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC 3.6.1.1
          Length = 2479

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 1    TKPYPTPLPKP-SHRRLPRSAHLRERASGLHLSPSPGRRTSRAQRICS 141
            T  Y TP+P P + R +P  A   +RAS   +SP+P  R  RA  +CS
Sbjct: 1753 TSEYATPIPTPRAVRVVPVPAPRIQRASTYRVSPTPTPRVLRAS-VCS 1799

>POLN_RRVT (P13888) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: Nonstructural protein 3 (nsP3); RNA-directed
           RNA polymerase nsP4 (EC 2.7.7.48) (Nonstructural protein
           4) (nsP4)] (Fragment)
          Length = 1148

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 1   TKPYPTPLPKPSHRRL-PRSAHLRERASGLHLSPSPGRRTSRAQRICS 141
           T  Y  P+P P   R+ P  A   +RAS   +SP+P  R  RA  +CS
Sbjct: 422 TSEYAKPIPAPRAARVVPVPAPRIQRASTYRVSPTPTPRVLRAS-VCS 468

>CHQB_NOCSI (Q5PXQ6) Hydroxyquinol 1,2-dioxygenase (EC 1.13.11.37) (1,2-HQD)|
          Length = 293

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 7   PYPTPLPKPSHRRLPRSAHLRERASGLH-LSPSPGRRT 117
           PYP P   P  R L  +     RAS LH +  +PGRRT
Sbjct: 196 PYPIPHDGPVGRMLAATGRSPMRASHLHFMVTAPGRRT 233

>HM23_CAEEL (P34663) Homeobox protein ceh-23|
          Length = 305

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 20/44 (45%), Positives = 22/44 (50%)
 Frame = -2

Query: 433 TAAALDS*RLPTSAFSLSLRDGKLSPTLSLGAASTESNLFPPSR 302
           T AAL +   PTS    S   G LSP L   A     NLFPPS+
Sbjct: 29  TIAALQA--CPTSCIP-STSTGMLSPNLPFSATIPRVNLFPPSQ 69

>PFER_PSEAE (Q04803) Transcriptional activator protein pfeR|
          Length = 305

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +1

Query: 13  PTPLPKPSHRRLPRSAH-LRERASGLHLSPSPGR 111
           P P PKP  RRL R    LR R   L   P PG+
Sbjct: 28  PKPEPKPKQRRLCRKVFPLRARCGALAHCPIPGK 61

>ZN263_HUMAN (O14978) Zinc finger protein 263 (Zinc finger protein FPM315)|
          Length = 683

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +1

Query: 13  PTPLPKPSHRRLPRSAHLRERASGLHLSPSPGRRTSRAQRICSG 144
           P P P PS    P ++HLR R      +  P    SR Q +C G
Sbjct: 29  PPPDPGPS----PEASHLRFRRFRFQEAAGPREALSRLQELCHG 68


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,503,291
Number of Sequences: 219361
Number of extensions: 740231
Number of successful extensions: 2574
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2568
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)