ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl03g06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467437.1| Oryza sativa (japonica cultivar-group), mRNA 107 1e-20
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 107 1e-20
3dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic D... 107 1e-20
4dbj|AK065045.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 1e-20
5ref|XM_743362.1| Aspergillus fumigatus Af293 hypothetical protei... 42 0.64
6ref|NM_187895.1| Oryza sativa (japonica cultivar-group), Ozsa833... 40 2.5
7ref|XM_463372.1| Oryza sativa (japonica cultivar-group), predic... 40 2.5
8gb|AC141922.19| Medicago truncatula clone mth2-9n11, complete se... 40 2.5
9gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 2.5
10dbj|AP000570.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.5
11gb|CP000249.1| Frankia sp. CcI3, complete genome 40 2.5
12dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.5
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.5
14gb|AE004855.1| Pseudomonas aeruginosa PAO1, section 416 of 529 o... 40 2.5
15dbj|AP000492.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.5
16dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic D... 40 2.5
17dbj|AK107371.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.5
18gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 2.5
19emb|AL731763.1|CNS07YQA Oryza sativa chromosome 12, . BAC OSJNBa... 40 2.5 
>ref|XM_467437.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3793

 Score =  107 bits (54), Expect = 1e-20
 Identities = 72/78 (92%)
 Strand = Plus / Plus

                                                                       
Query: 124 cgatggagagccccgtgaaggaggaggtcggcggggagctggcgatggagatcgagtcga 183
           ||||||||||||||| |||||||||||  || |||||||||||||||||||||||||| |
Sbjct: 238 cgatggagagccccgcgaaggaggaggcgggaggggagctggcgatggagatcgagtcca 297

                             
Query: 184 gcgtcacggcggaggact 201
            |||||||||||||||||
Sbjct: 298 ccgtcacggcggaggact 315
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  107 bits (54), Expect = 1e-20
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                            
Query: 124      cgatggagagccccgtgaaggaggaggtcggcggggagctggcgatggagatcgagtcga 183
                ||||||||||||||| |||||||||||  || |||||||||||||||||||||||||| |
Sbjct: 29513959 cgatggagagccccgcgaaggaggaggcgggaggggagctggcgatggagatcgagtcca 29513900

                                  
Query: 184      gcgtcacggcggaggact 201
                 |||||||||||||||||
Sbjct: 29513899 ccgtcacggcggaggact 29513882
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>dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1038_A06
          Length = 147836

 Score =  107 bits (54), Expect = 1e-20
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                          
Query: 124    cgatggagagccccgtgaaggaggaggtcggcggggagctggcgatggagatcgagtcga 183
              ||||||||||||||| |||||||||||  || |||||||||||||||||||||||||| |
Sbjct: 108989 cgatggagagccccgcgaaggaggaggcgggaggggagctggcgatggagatcgagtcca 108930

                                
Query: 184    gcgtcacggcggaggact 201
               |||||||||||||||||
Sbjct: 108929 ccgtcacggcggaggact 108912
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>dbj|AK065045.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I02, full
           insert sequence
          Length = 3793

 Score =  107 bits (54), Expect = 1e-20
 Identities = 72/78 (92%)
 Strand = Plus / Plus

                                                                       
Query: 124 cgatggagagccccgtgaaggaggaggtcggcggggagctggcgatggagatcgagtcga 183
           ||||||||||||||| |||||||||||  || |||||||||||||||||||||||||| |
Sbjct: 238 cgatggagagccccgcgaaggaggaggcgggaggggagctggcgatggagatcgagtcca 297

                             
Query: 184 gcgtcacggcggaggact 201
            |||||||||||||||||
Sbjct: 298 ccgtcacggcggaggact 315
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>ref|XM_743362.1| Aspergillus fumigatus Af293 hypothetical protein (Afu3g01340)
           partial mRNA
          Length = 441

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 156 ggggagctggcgatggagatc 176
           |||||||||||||||||||||
Sbjct: 343 ggggagctggcgatggagatc 363
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>ref|NM_187895.1| Oryza sativa (japonica cultivar-group), Ozsa8337 predicted mRNA
          Length = 1332

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 146 ggaggtcggcggggagctgg 165
           ||||||||||||||||||||
Sbjct: 45  ggaggtcggcggggagctgg 64
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>ref|XM_463372.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1593

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 143 ggaggaggtcggcggggagc 162
           ||||||||||||||||||||
Sbjct: 604 ggaggaggtcggcggggagc 585
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>gb|AC141922.19| Medicago truncatula clone mth2-9n11, complete sequence
          Length = 107448

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 68   ctctaaaccctagcggcatc 87
            ||||||||||||||||||||
Sbjct: 6518 ctctaaaccctagcggcatc 6537
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 110     ccaggccgccgccgcgatgg 129
               ||||||||||||||||||||
Sbjct: 4813961 ccaggccgccgccgcgatgg 4813942
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>dbj|AP000570.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0711E10
          Length = 157903

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   ggaggtcggcggggagctgg 165
             ||||||||||||||||||||
Sbjct: 46047 ggaggtcggcggggagctgg 46028
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 113     ggccgccgccgcgatggaga 132
               ||||||||||||||||||||
Sbjct: 4864738 ggccgccgccgcgatggaga 4864757
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 100      cgccggggagccaggccgccgccg 123
                ||||| ||||||||||||||||||
Sbjct: 17432745 cgccgaggagccaggccgccgccg 17432768
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 143      ggaggaggtcggcggggagc 162
                ||||||||||||||||||||
Sbjct: 23405412 ggaggaggtcggcggggagc 23405393



 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 146     ggaggtcggcggggagctgg 165
               ||||||||||||||||||||
Sbjct: 8470894 ggaggtcggcggggagctgg 8470875
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>gb|AE004855.1| Pseudomonas aeruginosa PAO1, section 416 of 529 of the complete
            genome
          Length = 11578

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 151  tcggcggggagctggcgatg 170
            ||||||||||||||||||||
Sbjct: 9444 tcggcggggagctggcgatg 9463
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>dbj|AP000492.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0705D01
          Length = 147174

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   ggaggtcggcggggagctgg 165
             ||||||||||||||||||||
Sbjct: 85849 ggaggtcggcggggagctgg 85830
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>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1103C09
          Length = 163996

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 143    ggaggaggtcggcggggagc 162
              ||||||||||||||||||||
Sbjct: 131110 ggaggaggtcggcggggagc 131091
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>dbj|AK107371.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-B04, full
           insert sequence
          Length = 1894

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 143 ggaggaggtcggcggggagc 162
           ||||||||||||||||||||
Sbjct: 679 ggaggaggtcggcggggagc 660
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 100      cgccggggagccaggccgccgccg 123
                ||||| ||||||||||||||||||
Sbjct: 17387116 cgccgaggagccaggccgccgccg 17387139
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>emb|AL731763.1|CNS07YQA Oryza sativa chromosome 12, . BAC OSJNBa0090O14 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 129619

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 100   cgccggggagccaggccgccgccg 123
             ||||| ||||||||||||||||||
Sbjct: 99661 cgccgaggagccaggccgccgccg 99638


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,700,658
Number of Sequences: 3902068
Number of extensions: 1700658
Number of successful extensions: 120787
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119536
Number of HSP's gapped (non-prelim): 1251
length of query: 201
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 179
effective length of database: 17,147,199,772
effective search space: 3069348759188
effective search space used: 3069348759188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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