ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl03g05 |
|---|---|
| Clone Library Name | barley_pub |
>AROD_METAC (Q8THC4) 3-dehydroquinate dehydratase (EC 4.2.1.10)| (3-dehydroquinase) (Type I DHQase) Length = 242 Score = 34.7 bits (78), Expect = 0.12 Identities = 16/78 (20%), Positives = 38/78 (48%) Frame = +1 Query: 169 LIQNSVDPLPLLPACSPSFSSLVDETFECEHGSSLPSASPVCSLSLGPQGISTRAISPMQ 348 L + + + ++P +L+ T E ++ + VC++++G G TR ++P+ Sbjct: 155 LAEADIAKIAVMPGSMEDVLNLLKVTLEFKN-----TGKTVCTIAMGKPGKHTRVVAPLY 209 Query: 349 DGALSHAQANNTSIVRPG 402 L++A + ++ PG Sbjct: 210 GSVLTYASIESNAVAAPG 227
>AROD_METMA (Q8PXE7) 3-dehydroquinate dehydratase (EC 4.2.1.10)| (3-dehydroquinase) (Type I DHQase) Length = 242 Score = 33.1 bits (74), Expect = 0.36 Identities = 18/90 (20%), Positives = 41/90 (45%) Frame = +1 Query: 133 IENCDNMMDNELLIQNSVDPLPLLPACSPSFSSLVDETFECEHGSSLPSASPVCSLSLGP 312 ++N +++ L + L ++P +L+ T + + + VC++++G Sbjct: 143 LQNMRTIIEEMFLAGADIAKLAVMPLSVGDTLNLLRVTLDFKD-----AGKSVCTIAMGS 197 Query: 313 QGISTRAISPMQDGALSHAQANNTSIVRPG 402 QG TR ++P L++A + + PG Sbjct: 198 QGKHTRVVAPFYGSVLTYASIESNASAAPG 227
>TBX3_RAT (Q7TST9) T-box transcription factor TBX3 (T-box protein 3)| Length = 743 Score = 32.3 bits (72), Expect = 0.62 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%) Frame = -1 Query: 308 PSEREHTGEAEGKLE----PCSHSKVSSTRDEKDGEQAGSSGRGSTLF 177 PSE E EAE K E C +K+S+T E+ G GS + LF Sbjct: 370 PSEAESDAEAESKEEHGPEACDTAKISTTTAEEPGRDKGSPATRAQLF 417
>TBX3_MOUSE (P70324) T-box transcription factor TBX3 (T-box protein 3)| Length = 741 Score = 32.3 bits (72), Expect = 0.62 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%) Frame = -1 Query: 308 PSEREHTGEAEGKLE----PCSHSKVSSTRDEKDGEQAGSSGRGSTLF 177 PSE E EAE K E C +K+S+T E+ G GS + LF Sbjct: 368 PSEAESDAEAESKEEHGPEACDAAKISTTTAEEPGRDKGSPATRAQLF 415
>GPC5B_HUMAN (Q9NZH0) G-protein coupled receptor family C group 5 member B| precursor (Retinoic acid-induced gene 2 protein) (RAIG-2) (A-69G12.1) Length = 403 Score = 32.0 bits (71), Expect = 0.80 Identities = 15/31 (48%), Positives = 17/31 (54%) Frame = +3 Query: 270 FAFCFSCVLSFTWSSRHKHQSYFTDAGWGLV 362 FA CFSC+LS W R + AGW LV Sbjct: 133 FALCFSCLLSQAWRVRRLVRHGTGPAGWQLV 163
>GPC5B_MOUSE (Q923Z0) G-protein coupled receptor family C group 5 member B| precursor (Retinoic acid-induced gene 2 protein) (RAIG-2) Length = 410 Score = 31.2 bits (69), Expect = 1.4 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +3 Query: 270 FAFCFSCVLSFTWSSRHKHQSYFTDAGWGLV 362 FA CFSC+LS W R + + A W LV Sbjct: 133 FALCFSCLLSQAWRVRRLVRQGTSPASWQLV 163
>DNLJ_CHLTR (O84148) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase| [NAD+]) Length = 663 Score = 31.2 bits (69), Expect = 1.4 Identities = 18/84 (21%), Positives = 40/84 (47%) Frame = +1 Query: 109 AKLHSLQSIENCDNMMDNELLIQNSVDPLPLLPACSPSFSSLVDETFECEHGSSLPSASP 288 A L++ IE D + + + ++ + +P + + + SL E ++ +PS P Sbjct: 351 ASLYNQDEIEKKDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWK------MPSLCP 404 Query: 289 VCSLSLGPQGISTRAISPMQDGAL 360 VC + + +S R ++P+ G + Sbjct: 405 VCHEPVVKEKVSVRCVNPLCSGGM 428
>RAD50_SULAC (O33600) DNA double-strand break repair rad50 ATPase| Length = 886 Score = 30.8 bits (68), Expect = 1.8 Identities = 17/56 (30%), Positives = 29/56 (51%) Frame = +1 Query: 4 KFNANIDAKEAMRVNKIDIGQMEKIKYEKNSNSFDAKLHSLQSIENCDNMMDNELL 171 + N+ I +E + + + Q+E K K ++AKL LQ +E N + NE+L Sbjct: 473 RINSLIKEREELEATRNKL-QLELQKRSKEKGIYEAKLKELQRLEEEKNKLQNEIL 527
>ARODE_CHLTR (O84375) Shikimate biosynthesis protein aroDE [Includes:| 3-dehydroquinate dehydratase (EC 4.2.1.10) (3-dehydroquinase) (Type I DHQase); Shikimate dehydrogenase (EC 1.1.1.25)] Length = 478 Score = 30.8 bits (68), Expect = 1.8 Identities = 20/61 (32%), Positives = 30/61 (49%) Frame = +1 Query: 220 SFSSLVDETFECEHGSSLPSASPVCSLSLGPQGISTRAISPMQDGALSHAQANNTSIVRP 399 S SS D C SLP + V + LG G +R +SP+ ++A++ +S V P Sbjct: 137 SSSSTTDLLDICHQKRSLPENTTV--VCLGGMGRPSRILSPILQNPFTYARSTGSSPVAP 194 Query: 400 G 402 G Sbjct: 195 G 195
>SFL1_YEAST (P20134) Flocculation suppression protein (SFL1 protein)| Length = 766 Score = 29.6 bits (65), Expect = 4.0 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 4/105 (3%) Frame = +1 Query: 115 LHSLQSIENC--DNM--MDNELLIQNSVDPLPLLPACSPSFSSLVDETFECEHGSSLPSA 282 L SL NC D++ +D+ +L + LPA S S+L++ EH SSL A Sbjct: 644 LRSLNKAANCAPDSVTPLDSSVLTGPPPKNMDNLPAVS---SNLINSPMNVEHSSSLSQA 700 Query: 283 SPVCSLSLGPQGISTRAISPMQDGALSHAQANNTSIVRPGVGVNS 417 P + L + T + + + +A+N+ R G GV S Sbjct: 701 EPAPQIELPQPSLPTTSTTK------NTGEADNSK--RKGSGVYS 737
>ARODE_CHLMU (P56961) Shikimate biosynthesis protein aroDE [Includes:| 3-dehydroquinate dehydratase (EC 4.2.1.10) (3-dehydroquinase) (Type I DHQase); Shikimate dehydrogenase (EC 1.1.1.25)] Length = 478 Score = 29.6 bits (65), Expect = 4.0 Identities = 28/96 (29%), Positives = 42/96 (43%) Frame = +1 Query: 115 LHSLQSIENCDNMMDNELLIQNSVDPLPLLPACSPSFSSLVDETFECEHGSSLPSASPVC 294 + SL + E+ D ++ +S+D L A SP+ S D C SLP + V Sbjct: 106 IRSLHTSEHTDITQLYTQMLASSIDYYKL--AVSPA--STTDLLNICRQKHSLPQNTTV- 160 Query: 295 SLSLGPQGISTRAISPMQDGALSHAQANNTSIVRPG 402 L LG G S+R +SP+ ++ V PG Sbjct: 161 -LCLGKIGQSSRILSPILQNPFTYTIPTGADPVAPG 195
>ALR_DEIRA (Q9RVE3) Alanine racemase (EC 5.1.1.1)| Length = 351 Score = 29.3 bits (64), Expect = 5.2 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +1 Query: 352 GALSHAQANNTSIVRPGVGVNSYFPTSLRHL 444 G LS + S+ RPG+ Y P LRH+ Sbjct: 191 GVLSFGRIEGMSLARPGLAAYGYVPEHLRHV 221
>GLT0_WHEAT (P10387) Glutenin, high molecular weight subunit DY10 precursor| Length = 648 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +1 Query: 382 TSIVRPGVGVNSYFPTSLRH 441 TS+ +PG G Y+PTSL+H Sbjct: 192 TSLQQPGQGQQGYYPTSLQH 211
>ENH3_HUMAN (Q9N2J8) HERV-H_2q24.1 provirus ancestral Env polyprotein precursor| (Envelope polyprotein) (Env protein HERV-H/p59) (HERV-H/env59) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 555 Score = 28.9 bits (63), Expect = 6.8 Identities = 18/65 (27%), Positives = 28/65 (43%) Frame = +1 Query: 196 PLLPACSPSFSSLVDETFECEHGSSLPSASPVCSLSLGPQGISTRAISPMQDGALSHAQA 375 P + + P F L +T ++P A+P+C P GI ISP + H Q+ Sbjct: 141 PYINSTPPIFGPLTTQT-------TIPVAAPLCISRQRPTGIPLGNISPSRCSFTLHLQS 193 Query: 376 NNTSI 390 T + Sbjct: 194 PTTHV 198
>CSMD1_HUMAN (Q96PZ7) CUB and sushi domain-containing protein 1 precursor (CUB and| sushi multiple domains protein 1) Length = 3565 Score = 28.9 bits (63), Expect = 6.8 Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 3/88 (3%) Frame = +1 Query: 208 ACSPSFSSLVDETFECEHGSSLPSASPVCSLSLGP--QGISTRAISP-MQDGALSHAQAN 378 +C P ++ DE CE A P C G QG S +SP D + Sbjct: 899 SCDPGYTLSDDEPLVCERNHQWNHALPSCDALCGGYIQGKSGTVLSPGFPDFYPNSLNCT 958 Query: 379 NTSIVRPGVGVNSYFPTSLRHLQSTNAF 462 T V G GV F T HL+S++ + Sbjct: 959 WTIEVSHGKGVQMIFHTF--HLESSHDY 984
>AHR_MUSMM (Q8R4S5) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 883 Score = 28.5 bits (62), Expect = 8.9 Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 8/133 (6%) Frame = +1 Query: 10 NANIDAKEAMRVNKIDIGQMEKIKYEKNSNSFDAKLHSLQSIENCDNMMDNELL--IQNS 183 N N D MR ID E I+ +N F + ++ D + +E+L +Q+S Sbjct: 526 NKNNDLYNIMRNLGIDF---EDIRSMQNEEFFRTDSTAAGEVDFKDIDITDEILTYVQDS 582 Query: 184 VDPLPLL-PACSPS-----FSSLVDETFECEHGSSLPSASPVCSLSLGPQGISTRAISPM 345 ++ L+ AC S ++ E + E L P +L PQ + + P Sbjct: 583 LNNSTLMNSACQQQPVTQHLSCMLQERLQLEQQQQLQQPPPQ---ALEPQQQLCQMVCPQ 639 Query: 346 QDGALSHAQANNT 384 QD H Q N T Sbjct: 640 QDLGPKHTQINGT 652
>AHR_MOUSE (P30561) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 848 Score = 28.5 bits (62), Expect = 8.9 Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 8/133 (6%) Frame = +1 Query: 10 NANIDAKEAMRVNKIDIGQMEKIKYEKNSNSFDAKLHSLQSIENCDNMMDNELL--IQNS 183 N N D MR ID E I+ +N F + ++ D + +E+L +Q+S Sbjct: 526 NKNNDLYNIMRNLGIDF---EDIRSMQNEEFFRTDSTAAGEVDFKDIDITDEILTYVQDS 582 Query: 184 VDPLPLL-PACSPS-----FSSLVDETFECEHGSSLPSASPVCSLSLGPQGISTRAISPM 345 ++ L+ AC S ++ E + E L P +L PQ + + P Sbjct: 583 LNNSTLMNSACQQQPVTQHLSCMLQERLQLEQQQQLQQPPPQ---ALEPQQQLCQMVCPQ 639 Query: 346 QDGALSHAQANNT 384 QD H Q N T Sbjct: 640 QDLGPKHTQINGT 652
>CREG2_MOUSE (Q8BGC9) CREG2 protein precursor| Length = 288 Score = 28.5 bits (62), Expect = 8.9 Identities = 26/101 (25%), Positives = 43/101 (42%) Frame = +1 Query: 148 NMMDNELLIQNSVDPLPLLPACSPSFSSLVDETFECEHGSSLPSASPVCSLSLGPQGIST 327 N +D EL +S LPA SS+ ++F P+++ L P+G + Sbjct: 44 NEVDEEL---DSASTEEALPALLEDSSSIWQQSF--------PASAHKEDTHLRPRGSAR 92 Query: 328 RAISPMQDGALSHAQANNTSIVRPGVGVNSYFPTSLRHLQS 450 +P G S+ + + +S PG V++ SL H S Sbjct: 93 ARPAPAARGMFSYRRESGSSEASPGPRVHAGTARSLAHASS 133 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.128 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,925,939 Number of Sequences: 219361 Number of extensions: 1026290 Number of successful extensions: 2553 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2462 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2551 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
